PROSITE entry PS00421
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General information about the entry
| Entry name [info] | TM4_1 |
| Accession [info] | PS00421 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00371 |
Name and characterization of the entry
| Description [info] | Transmembrane 4 family signature. |
| Pattern [info] |
[GC]-x(3)-[LIVMFS]-x(2)-[GSA]-[LIVMFTC]-[LIVMFA]-G-[CLYI]-x-[GA]-[STAPL]- x(2)-[EGAR]-x(2)-[CWNLF]-[LIVMGA]-[LIVM]. |
Numerical results [info]
| Total number of hits | 99 in 99 different sequences |
| Number of true positive hits | 98 in 98 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 46 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 98.99 % |
| Recall (true positives / (true positives + false negatives)) | 68.06 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
98 sequences
CD151_CHLAE (P61170 ), CD151_HUMAN (P48509 ), CD151_MACMU (P61171 ), CD151_MOUSE (O35566 ), CD151_RAT (Q9QZA6 ), CD37_BOVIN (Q2KHY8 ), CD37_HUMAN (P11049 ), CD37_MOUSE (Q61470 ), CD37_RAT (P31053 ), CD53_BOVIN (Q58DM3 ), CD53_HUMAN (P19397 ), CD53_MOUSE (Q61451 ), CD53_RAT (P24485 ), CD63_BOVIN (Q9XSK2 ), CD63_FELCA (Q76B49 ), CD63_HUMAN (P08962 ), CD63_MOUSE (P41731 ), CD63_RABIT (Q28709 ), CD63_RAT (P28648 ), CD81_BOVIN (Q3ZCD0 ), CD81_CHLAE (O97703 ), CD81_HUMAN (P60033 ), CD81_MOUSE (P35762 ), CD81_PANTR (P60034 ), CD81_RAT (Q62745 ), CD81_SAGOE (Q9N0J9 ), CD82_HUMAN (P27701 ), CD82_MOUSE (P40237 ), CD82_RAT (O70352 ), CD9_BOVIN (P30932 ), CD9_CHLAE (P30409 ), CD9_FELCA (P40239 ), CD9_HUMAN (P21926 ), CD9_MOUSE (P40240 ), CD9_PIG (Q8WMQ3 ), CD9_RAT (P40241 ), IM23_SCHHA (Q26499 ), IM23_SCHJA (P27591 ), IM23_SCHMA (P19331 ), IM25_SCHJA (P91799 ), TET7_ARATH (Q9SUD4 ), TET8_ARATH (Q8S8Q6 ), TSN10_HUMAN (Q9H1Z9 ), TSN12_BOVIN (Q29RH7 ), TSN12_CHICK (Q5ZIF5 ), TSN12_HUMAN (O95859 ), TSN12_MOUSE (Q8BKT6 ), TSN12_PONAB (Q5R8B5 ), TSN12_RAT (Q569A2 ), TSN14_HUMAN (Q8NG11 ), TSN14_MOUSE (Q8QZY6 ), TSN17_BOVIN (Q58DN3 ), TSN17_HUMAN (Q96FV3 ), TSN17_MOUSE (Q9D7W4 ), TSN17_RAT (Q4V8E0 ), TSN18_BOVIN (Q58CY8 ), TSN18_HUMAN (Q96SJ8 ), TSN18_MOUSE (Q80WR1 ), TSN1_BOVIN (Q3T0S3 ), TSN1_HUMAN (O60635 ), TSN1_MACFA (Q4R7W6 ), TSN1_MOUSE (Q99J59 ), TSN1_PONAB (Q5RC27 ), TSN1_RAT (Q6AYR9 ), TSN2_HUMAN (O60636 ), TSN2_MOUSE (Q922J6 ), TSN2_RAT (Q9JJW1 ), TSN3_BOVIN (Q3SZR9 ), TSN3_HUMAN (O60637 ), TSN3_MOUSE (Q9QY33 ), TSN3_PONAB (Q5RE11 ), TSN4_HUMAN (O14817 ), TSN4_MOUSE (Q9DCK3 ), TSN4_PONAB (Q5RAP3 ), TSN5_BOVIN (Q17QJ5 ), TSN5_HUMAN (P62079 ), TSN5_MOUSE (P62080 ), TSN5_RAT (Q68VK5 ), TSN6_BOVIN (Q32KU6 ), TSN6_HUMAN (O43657 ), TSN6_PONAB (Q5RAS5 ), TSN7_HUMAN (P41732 ), TSN7_MOUSE (Q62283 ), TSN7_PANTR (Q7YQL0 ), TSN7_PONPY (Q7YQK9 ), TSN8_BOVIN (Q2KIS9 ), TSN8_HUMAN (P19075 ), TSN8_MOUSE (Q8R3G9 ), TSN8_PONAB (Q5R9S6 ), TSN9_DANRE (Q6GMK6 ), TSN9_HUMAN (O75954 ), TSN9_MOUSE (Q8BJU2 ), TSN9_PIG (Q06AA5 ), TSN9_SALSA (B5X3I6 ), TSN9_SHEEP (B3VSC2 ), TSN9_XENLA (Q6DCQ3 ), TSN9_XENTR (B0BM39 ), TSP17_CAEEL (Q11098 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
46 sequences
CD151_BOVIN (Q3ZBH3 ), TET10_ARATH (F4I214 ), TET11_ARATH (Q9LPR6 ), TET12_ARATH (Q9FN51 ), TET13_ARATH (Q9SI56 ), TET14_ARATH (Q58G33 ), TET15_ARATH (Q1PDI1 ), TET16_ARATH (Q5BQ04 ), TET17_ARATH (Q58G35 ), TET18_ARATH (Q93XY5 ), TET19_ARATH (Q940P5 ), TET20_ARATH (Q9SVU4 ), TET2_ARATH (Q9ZUN5 ), TET3_ARATH (Q9M1E7 ), TET4_ARATH (Q9LSS4 ), TET5_ARATH (Q84WF6 ), TET6_ARATH (Q9C7C1 ), TET9_ARATH (Q9M0B7 ), TRN2_ARATH (Q9FIQ5 ), TS31A_XENLA (Q5XHG6 ), TS31B_XENLA (Q7ZWW7 ), TSN10_MOUSE (Q8VCF5 ), TSN11_BOVIN (Q0VC33 ), TSN11_HUMAN (A1L157 ), TSN11_MOUSE (Q9D1D1 ), TSN11_RAT (Q568Y5 ), TSN13_BOVIN (Q3ZBV0 ), TSN13_HUMAN (O95857 ), TSN13_MOUSE (Q9D8C2 ), TSN13_RAT (Q5FVL6 ), TSN15_BOVIN (Q1JQA4 ), TSN15_HUMAN (O95858 ), TSN15_MOUSE (F7BWT7 ), TSN16_HUMAN (Q9UKR8 ), TSN31_BOVIN (Q32KP1 ), TSN31_DANRE (Q7ZUB3 ), TSN31_HUMAN (Q12999 ), TSN31_MOUSE (Q9CQ88 ), TSN31_PIG (Q29257 ), TSN31_PONAB (Q5RAP8 ), TSN31_RAT (Q5U1V9 ), TSN36_DANRE (Q6NWG0 ), TSN6_MOUSE (O70401 ), TSP12_CAEEL (Q22495 ), TSP14_CAEEL (H2L006 ), TSP1_CAEEL (P34285 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
NRTP_SYNP2 (B1XLL7 ) |
| PDB [Detailed view] |
3 PDB
5TCX; 6K4J; 7JIC |