PROSITE logo

PROSITE entry PS00421


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] TM4_1
Accession [info] PS00421
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00371

Name and characterization of the entry

Description [info] Transmembrane 4 family signature.
Pattern [info]
[GC]-x(3)-[LIVMFS]-x(2)-[GSA]-[LIVMFTC]-[LIVMFA]-G-[CLYI]-x-[GA]-[STAPL]-
x(2)-[EGAR]-x(2)-[CWNLF]-[LIVMGA]-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 101 in 101 different sequences
Number of true positive hits 100 in 100 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 46
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.01 %
Recall (true positives / (true positives + false negatives)) 68.49 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
100 sequences

CD151_CHLAE (P61170), CD151_HUMAN (P48509), CD151_MACMU (P61171), 
CD151_MOUSE (O35566), CD151_RAT   (Q9QZA6), CD37_BOVIN  (Q2KHY8), 
CD37_HUMAN  (P11049), CD37_MOUSE  (Q61470), CD37_RAT(P31053), 
CD53_BOVIN  (Q58DM3), CD53_HUMAN  (P19397), CD53_MOUSE  (Q61451), 
CD53_RAT(P24485), CD63_BOVIN  (Q9XSK2), CD63_FELCA  (Q76B49), 
CD63_HUMAN  (P08962), CD63_MOUSE  (P41731), CD63_RABIT  (Q28709), 
CD63_RAT(P28648), CD81_BOVIN  (Q3ZCD0), CD81_CHLAE  (O97703), 
CD81_HUMAN  (P60033), CD81_MOUSE  (P35762), CD81_PANTR  (P60034), 
CD81_RAT(Q62745), CD81_SAGOE  (Q9N0J9), CD82_HUMAN  (P27701), 
CD82_MOUSE  (P40237), CD82_RAT(O70352), CD9_BOVIN   (P30932), 
CD9_CHLAE   (P30409), CD9_FELCA   (P40239), CD9_HUMAN   (P21926), 
CD9_MOUSE   (P40240), CD9_PIG (Q8WMQ3), CD9_RAT (P40241), 
IM23_SCHHA  (Q26499), IM23_SCHJA  (P27591), IM23_SCHMA  (P19331), 
IM25_SCHJA  (P91799), TET7_ARATH  (Q9SUD4), TET8_ARATH  (Q8S8Q6), 
TSN10_HUMAN (Q9H1Z9), TSN12_BOVIN (Q29RH7), TSN12_CHICK (Q5ZIF5), 
TSN12_HUMAN (O95859), TSN12_MOUSE (Q8BKT6), TSN12_PONAB (Q5R8B5), 
TSN12_RAT   (Q569A2), TSN14_HUMAN (Q8NG11), TSN14_MOUSE (Q8QZY6), 
TSN17_BOVIN (Q58DN3), TSN17_HUMAN (Q96FV3), TSN17_MOUSE (Q9D7W4), 
TSN17_RAT   (Q4V8E0), TSN18_BOVIN (Q58CY8), TSN18_CHICK (A0A8V0ZLT4), 
TSN18_DANRE (A0A8M2B5N2), TSN18_HUMAN (Q96SJ8), TSN18_MOUSE (Q80WR1), 
TSN1_BOVIN  (Q3T0S3), TSN1_HUMAN  (O60635), TSN1_MACFA  (Q4R7W6), 
TSN1_MOUSE  (Q99J59), TSN1_PONAB  (Q5RC27), TSN1_RAT(Q6AYR9), 
TSN2_HUMAN  (O60636), TSN2_MOUSE  (Q922J6), TSN2_RAT(Q9JJW1), 
TSN3_BOVIN  (Q3SZR9), TSN3_HUMAN  (O60637), TSN3_MOUSE  (Q9QY33), 
TSN3_PONAB  (Q5RE11), TSN4_HUMAN  (O14817), TSN4_MOUSE  (Q9DCK3), 
TSN4_PONAB  (Q5RAP3), TSN5_BOVIN  (Q17QJ5), TSN5_HUMAN  (P62079), 
TSN5_MOUSE  (P62080), TSN5_RAT(Q68VK5), TSN6_BOVIN  (Q32KU6), 
TSN6_HUMAN  (O43657), TSN6_PONAB  (Q5RAS5), TSN7_HUMAN  (P41732), 
TSN7_MOUSE  (Q62283), TSN7_PANTR  (Q7YQL0), TSN7_PONPY  (Q7YQK9), 
TSN8_BOVIN  (Q2KIS9), TSN8_HUMAN  (P19075), TSN8_MOUSE  (Q8R3G9), 
TSN8_PONAB  (Q5R9S6), TSN9_DANRE  (Q6GMK6), TSN9_HUMAN  (O75954), 
TSN9_MOUSE  (Q8BJU2), TSN9_PIG(Q06AA5), TSN9_SALSA  (B5X3I6), 
TSN9_SHEEP  (B3VSC2), TSN9_XENLA  (Q6DCQ3), TSN9_XENTR  (B0BM39), 
TSP17_CAEEL (Q11098)
» more

UniProtKB/Swiss-Prot
False negative sequences
46 sequences

CD151_BOVIN (Q3ZBH3), TET10_ARATH (F4I214), TET11_ARATH (Q9LPR6), 
TET12_ARATH (Q9FN51), TET13_ARATH (Q9SI56), TET14_ARATH (Q58G33), 
TET15_ARATH (Q1PDI1), TET16_ARATH (Q5BQ04), TET17_ARATH (Q58G35), 
TET18_ARATH (Q93XY5), TET19_ARATH (Q940P5), TET20_ARATH (Q9SVU4), 
TET2_ARATH  (Q9ZUN5), TET3_ARATH  (Q9M1E7), TET4_ARATH  (Q9LSS4), 
TET5_ARATH  (Q84WF6), TET6_ARATH  (Q9C7C1), TET9_ARATH  (Q9M0B7), 
TRN2_ARATH  (Q9FIQ5), TS31A_XENLA (Q5XHG6), TS31B_XENLA (Q7ZWW7), 
TSN10_MOUSE (Q8VCF5), TSN11_BOVIN (Q0VC33), TSN11_HUMAN (A1L157), 
TSN11_MOUSE (Q9D1D1), TSN11_RAT   (Q568Y5), TSN13_BOVIN (Q3ZBV0), 
TSN13_HUMAN (O95857), TSN13_MOUSE (Q9D8C2), TSN13_RAT   (Q5FVL6), 
TSN15_BOVIN (Q1JQA4), TSN15_HUMAN (O95858), TSN15_MOUSE (F7BWT7), 
TSN16_HUMAN (Q9UKR8), TSN31_BOVIN (Q32KP1), TSN31_DANRE (Q7ZUB3), 
TSN31_HUMAN (Q12999), TSN31_MOUSE (Q9CQ88), TSN31_PIG   (Q29257), 
TSN31_PONAB (Q5RAP8), TSN31_RAT   (Q5U1V9), TSN36_DANRE (Q6NWG0), 
TSN6_MOUSE  (O70401), TSP12_CAEEL (Q22495), TSP14_CAEEL (H2L006), 
TSP1_CAEEL  (P34285)
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

NRTP_PICP2  (B1XLL7)

		
PDB
[Detailed view]
3 PDB

5TCX; 6K4J; 7JIC