PROSITE entry PS00421
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General information about the entry
| Entry name [info] | TM4_1 |
| Accession [info] | PS00421 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00371 |
Name and characterization of the entry
| Description [info] | Transmembrane 4 family signature. |
| Pattern [info] |
[GC]-x(3)-[LIVMFS]-x(2)-[GSA]-[LIVMFTC]-[LIVMFA]-G-[CLYI]-x-[GA]-[STAPL]- x(2)-[EGAR]-x(2)-[CWNLF]-[LIVMGA]-[LIVM]. |
Numerical results [info]
| Total number of hits | 101 in 101 different sequences |
| Number of true positive hits | 100 in 100 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 46 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 99.01 % |
| Recall (true positives / (true positives + false negatives)) | 68.49 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
100 sequences
CD151_CHLAE (P61170), CD151_HUMAN (P48509), CD151_MACMU (P61171), CD151_MOUSE (O35566), CD151_RAT (Q9QZA6), CD37_BOVIN (Q2KHY8), CD37_HUMAN (P11049), CD37_MOUSE (Q61470), CD37_RAT(P31053), CD53_BOVIN (Q58DM3), CD53_HUMAN (P19397), CD53_MOUSE (Q61451), CD53_RAT(P24485), CD63_BOVIN (Q9XSK2), CD63_FELCA (Q76B49), CD63_HUMAN (P08962), CD63_MOUSE (P41731), CD63_RABIT (Q28709), CD63_RAT(P28648), CD81_BOVIN (Q3ZCD0), CD81_CHLAE (O97703), CD81_HUMAN (P60033), CD81_MOUSE (P35762), CD81_PANTR (P60034), CD81_RAT(Q62745), CD81_SAGOE (Q9N0J9), CD82_HUMAN (P27701), CD82_MOUSE (P40237), CD82_RAT(O70352), CD9_BOVIN (P30932), CD9_CHLAE (P30409), CD9_FELCA (P40239), CD9_HUMAN (P21926), CD9_MOUSE (P40240), CD9_PIG (Q8WMQ3), CD9_RAT (P40241), IM23_SCHHA (Q26499), IM23_SCHJA (P27591), IM23_SCHMA (P19331), IM25_SCHJA (P91799), TET7_ARATH (Q9SUD4), TET8_ARATH (Q8S8Q6), TSN10_HUMAN (Q9H1Z9), TSN12_BOVIN (Q29RH7), TSN12_CHICK (Q5ZIF5), TSN12_HUMAN (O95859), TSN12_MOUSE (Q8BKT6), TSN12_PONAB (Q5R8B5), TSN12_RAT (Q569A2), TSN14_HUMAN (Q8NG11), TSN14_MOUSE (Q8QZY6), TSN17_BOVIN (Q58DN3), TSN17_HUMAN (Q96FV3), TSN17_MOUSE (Q9D7W4), TSN17_RAT (Q4V8E0), TSN18_BOVIN (Q58CY8), TSN18_CHICK (A0A8V0ZLT4), TSN18_DANRE (A0A8M2B5N2), TSN18_HUMAN (Q96SJ8), TSN18_MOUSE (Q80WR1), TSN1_BOVIN (Q3T0S3), TSN1_HUMAN (O60635), TSN1_MACFA (Q4R7W6), TSN1_MOUSE (Q99J59), TSN1_PONAB (Q5RC27), TSN1_RAT(Q6AYR9), TSN2_HUMAN (O60636), TSN2_MOUSE (Q922J6), TSN2_RAT(Q9JJW1), TSN3_BOVIN (Q3SZR9), TSN3_HUMAN (O60637), TSN3_MOUSE (Q9QY33), TSN3_PONAB (Q5RE11), TSN4_HUMAN (O14817), TSN4_MOUSE (Q9DCK3), TSN4_PONAB (Q5RAP3), TSN5_BOVIN (Q17QJ5), TSN5_HUMAN (P62079), TSN5_MOUSE (P62080), TSN5_RAT(Q68VK5), TSN6_BOVIN (Q32KU6), TSN6_HUMAN (O43657), TSN6_PONAB (Q5RAS5), TSN7_HUMAN (P41732), TSN7_MOUSE (Q62283), TSN7_PANTR (Q7YQL0), TSN7_PONPY (Q7YQK9), TSN8_BOVIN (Q2KIS9), TSN8_HUMAN (P19075), TSN8_MOUSE (Q8R3G9), TSN8_PONAB (Q5R9S6), TSN9_DANRE (Q6GMK6), TSN9_HUMAN (O75954), TSN9_MOUSE (Q8BJU2), TSN9_PIG(Q06AA5), TSN9_SALSA (B5X3I6), TSN9_SHEEP (B3VSC2), TSN9_XENLA (Q6DCQ3), TSN9_XENTR (B0BM39), TSP17_CAEEL (Q11098)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
46 sequences
CD151_BOVIN (Q3ZBH3), TET10_ARATH (F4I214), TET11_ARATH (Q9LPR6), TET12_ARATH (Q9FN51), TET13_ARATH (Q9SI56), TET14_ARATH (Q58G33), TET15_ARATH (Q1PDI1), TET16_ARATH (Q5BQ04), TET17_ARATH (Q58G35), TET18_ARATH (Q93XY5), TET19_ARATH (Q940P5), TET20_ARATH (Q9SVU4), TET2_ARATH (Q9ZUN5), TET3_ARATH (Q9M1E7), TET4_ARATH (Q9LSS4), TET5_ARATH (Q84WF6), TET6_ARATH (Q9C7C1), TET9_ARATH (Q9M0B7), TRN2_ARATH (Q9FIQ5), TS31A_XENLA (Q5XHG6), TS31B_XENLA (Q7ZWW7), TSN10_MOUSE (Q8VCF5), TSN11_BOVIN (Q0VC33), TSN11_HUMAN (A1L157), TSN11_MOUSE (Q9D1D1), TSN11_RAT (Q568Y5), TSN13_BOVIN (Q3ZBV0), TSN13_HUMAN (O95857), TSN13_MOUSE (Q9D8C2), TSN13_RAT (Q5FVL6), TSN15_BOVIN (Q1JQA4), TSN15_HUMAN (O95858), TSN15_MOUSE (F7BWT7), TSN16_HUMAN (Q9UKR8), TSN31_BOVIN (Q32KP1), TSN31_DANRE (Q7ZUB3), TSN31_HUMAN (Q12999), TSN31_MOUSE (Q9CQ88), TSN31_PIG (Q29257), TSN31_PONAB (Q5RAP8), TSN31_RAT (Q5U1V9), TSN36_DANRE (Q6NWG0), TSN6_MOUSE (O70401), TSP12_CAEEL (Q22495), TSP14_CAEEL (H2L006), TSP1_CAEEL (P34285)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
NRTP_SYNP2 (B1XLL7) |
| PDB [Detailed view] |
3 PDB
5TCX; 6K4J; 7JIC |