PROSITE entry PS00447
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General information about the entry
Entry name [info] | DNA_POLYMERASE_A |
Accession [info] | PS00447 |
Entry type [info] | PATTERN |
Date [info] |
01-MAY-1991 CREATED;
01-NOV-1995 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00412 |
Name and characterization of the entry
Description [info] | DNA polymerase family A signature. |
Pattern [info] |
R-x(2)-[GSAV]-K-x(3)-[LIVMFY]-[AGQ]-x(2)-Y-x(2)-[GS]-x(3)-[LIVMA]. |
Numerical results [info]
Total number of hits | 58 in 58 different sequences |
Number of true positive hits | 56 in 56 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 2 in 2 different sequences |
Number of false negative sequences | 10 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 96.55 % |
Recall (true positives / (true positives + false negatives)) | 84.85 % |
Comments [info]
Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
56 sequences
DPM1_ARATH (Q9LM93 ), DPO1F_THETH (P30313 ), DPO1T_THET8 (P52028 ), DPO1_AQUAE (O67779 ), DPO1_BACCA (Q04957 ), DPO1_BACSU (O34996 ), DPO1_BORBU (O51498 ), DPO1_CALBD (Q59156 ), DPO1_CHLAA (O08307 ), DPO1_DEIRA (P52027 ), DPO1_ECOLI (P00582 ), DPO1_GEOSE (P52026 ), DPO1_HAEIN (P43741 ), DPO1_HELPJ (Q9ZJE9 ), DPO1_HELPY (P56105 ), DPO1_LACLA (Q9CDS1 ), DPO1_LACLM (O32801 ), DPO1_MYCBO (P0A551 ), DPO1_MYCLE (P46835 ), DPO1_MYCTO (P9WNU4 ), DPO1_MYCTU (P9WNU5 ), DPO1_PSEAE (Q9HT80 ), DPO1_RHILE (Q9S1G2 ), DPO1_RICBR (Q1RH76 ), DPO1_RICCN (Q92GB7 ), DPO1_RICFE (Q9RAA9 ), DPO1_RICHE (Q9RLB6 ), DPO1_RICPR (O05949 ), DPO1_RICTY (Q9RLA0 ), DPO1_SALTY (Q9F173 ), DPO1_STRPN (P59199 ), DPO1_STRR6 (P59200 ), DPO1_THEAQ (P19821 ), DPO1_THECA (P80194 ), DPO1_THEFI (O52225 ), DPO1_TREPA (P74933 ), DPOG1_CHICK (Q92076 ), DPOG1_DROME (Q27607 ), DPOG1_HUMAN (P54098 ), DPOG1_MOUSE (P54099 ), DPOG1_RAT (Q9QYV8 ), DPOG1_XENLA (Q91684 ), DPOG_NEUCR (Q9Y767 ), DPOG_YEAST (P15801 ), DPOLA_BPPM6 (P0DTK4 ), DPOLQ_CAEEL (A0FLQ6 ), DPOLQ_HUMAN (O75417 ), DPOLQ_MOUSE (Q8CGS6 ), DPOL_BPE32 (B0FIL5 ), DPOL_BPMD2 (O64235 ), DPOL_BPML5 (Q05254 ), DPOL_BPSP1 (P30314 ), DPOL_BPSP2 (P06225 ), DPOL_BPT3 (P20311 ), DPOL_BPT5 (P19822 ), DPOL_BPT7 (P00581 )» more
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UniProtKB/Swiss-Prot False negative sequences |
10 sequences
DPO1_SYNY3 (Q55971 ), DPOG_PICPA (Q01941 ), DPOG_SCHPO (Q12704 ), DPOLN_HUMAN (Q7Z5Q5 ), DPOLN_MOUSE (Q7TQ07 ), DPOLQ_DROME (O18475 ), POLIA_ARATH (F4I6M1 ), POLIA_ORYSJ (Q6Z4T5 ), POLIB_ARATH (Q84ND9 ), POLIB_ORYSJ (Q6Z4T3 )» more |
UniProtKB/Swiss-Prot False positive sequences |
2 sequences
AGGC_ECOLX (P46005 ), FA83B_MOUSE (Q0VBM2 ) |
PDB [Detailed view] |
161 PDB
1BGX; 1D8Y; 1D9D; 1D9F; 1DPI; 1JXE; 1KFD; 1KFS; 1KLN; 1KRP; 1KSP; 1KTQ; 1L3S; 1L3T; 1L3U; 1L3V; 1L5U; 1LV5; 1NJX; 1NJY; 1NJZ; 1NK0; 1NK4; 1NK5; 1NK6; 1NK7; 1NK8; 1NK9; 1NKB; 1NKC; 1NKE; 1QSL; 1QSS; 1QSY; 1QTM; 1SKR; 1SKS; 1SKW; 1SL0; 1SL1; 1SL2; 1T7P; 1T8E; 1TAQ; 1TAU; 1TK0; 1TK5; 1TK8; 1TKD; 1U45; 1U47; 1U48; 1U49; 1U4B; 1UA1; 1X9M; 1X9S; 1X9W; 1XC9; 1XWL; 1ZYQ; 2AJQ; 2BDP; 2HHX; 2KFN; 2KFZ; 2KTQ; 2KZM; 2KZZ; 3BDP; 3EYZ; 3EZ5; 3IKM; 3KTQ; 3LWL; 3LWM; 3M8R; 3M8S; 3OJS; 3OJU; 3PO4; 3PO5; 3PY8; 3RR7; 3RR8; 3RRG; 3RRH; 3RTV; 3SV3; 3SV4; 3SYZ; 3SZ2; 3T3F; 4BDP; 4BWJ; 4BWM; 4C8K; 4C8L; 4C8M; 4C8N; 4C8O; 4CCH; 4DF4; 4DF8; 4DFJ; 4DFK; 4DFM; 4DFP; 4DLE; 4DLG; 4ELT; 4ELU; 4ELV; 4KTQ; 4N56; 4N5S; 4X0P; 4X0Q; 4XIU; 4ZTU; 4ZTZ; 5C51; 5C52; 5C53; 5E41; 5IKN; 5KTQ; 5NKL; 5O7T; 5OXJ; 5SZT; 5W6K; 5W6Q; 5YTC; 5YTD; 5YTE; 5YTF; 5YTG; 5YTH; 5Z3N; 6FBC; 6FBD; 6FBE; 6FBF; 6FBG; 6FBH; 6FBI; 6N7W; 6N9U; 6N9V; 6N9W; 6N9X; 6P7E; 6Q4U; 6Q4V; 7OWF; 7ZUS; 7ZX0; 7ZX1; 8E23; 8E24 » more |