PROSITE entry PS00466
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General information about the entry
Entry name [info] | ZF_TFIIS_1 |
Accession [info] | PS00466 |
Entry type [info] | PATTERN |
Date [info] |
01-MAY-1991 CREATED;
01-APR-2006 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00383 |
Name and characterization of the entry
Description [info] | Zinc finger TFIIS-type signature. |
Pattern [info] |
C-x(2)-C-x(9)-[LIVMQSART]-[QH]-[STQLMI]-[RA]-[SACR]-x-[DE]-[DET]- [PGSEAM]-x(6)-C-x(2,5)-C-x(3)-[FWE]. |
Numerical results [info]
Total number of hits | 55 in 55 different sequences |
Number of true positive hits | 55 in 55 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 8 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 87.30 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Site [info] | zinc at position 1 |
Site [info] | zinc at position 3 |
Site [info] | zinc at position 15 |
Site [info] | zinc at position 17 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
55 sequences
081R_FRG3G (Q6GZP4), RDO2_ARATH (Q9ZVH8), RP30_MONPV (A0A7H0DN39), RP30_VACCA (O57187), RP30_VACCC (P21082), RP30_VACCW (P21603), RP30_VAR67 (P33796), RPA12_BOVIN (Q1RMP0), RPA12_HUMAN (Q9P1U0), RPA12_MACMU (Q5TM50), RPA12_MOUSE (Q791N7), RPA12_PANTR (Q1XHV8), RPA12_RAT (Q6MFY5), RPA12_SCHPO (O94703), RPA12_YEAST (P32529), RPB9_ASHGO (Q755B3), RPB9_BOVIN (Q32P73), RPB9_CANGA (Q6FS48), RPB9_DROME (P36958), RPB9_HUMAN (P36954), RPB9_MOUSE (P60898), RPB9_PIG(P60899), RPB9_SCHPO (O74635), RPB9_YEAST (P27999), RPC10_HUMAN (Q9Y2Y1), RPC10_MOUSE (Q9CQZ7), RPO5_FOWPN (Q9J5C0), TCEA1_BOVIN (Q29RL9), TCEA1_DICDI (Q54YG9), TCEA1_HUMAN (P23193), TCEA1_MOUSE (P10711), TCEA1_RAT (Q4KLL0), TCEA2_BOVIN (Q148K0), TCEA2_HUMAN (Q15560), TCEA2_MOUSE (Q9QVN7), TCEA2_RAT (Q63799), TCEA3_BOVIN (Q2KI09), TCEA3_HUMAN (O75764), TCEA3_MOUSE (P23881), TFIIS_ASFB7 (P27948), TFIIS_ASFK5 (P0C8F5), TFIIS_ASFM2 (P0C8F6), TFIIS_ASFP4 (P0C8F7), TFIIS_ASFWA (P0C8F8), TFS1_SACS2 (Q980K2), TFS2_CAEEL (P52652), TFS2_DROME (P20232), TFS2_SCHPO (P49373), TFS2_YEAST (P07273), TFS_ARCFU (O29033), TFS_METJA (Q58548), TFS_METTH (O27369), TFS_METTL (Q9P9I8), TFS_SULAC (Q07271), TFS_THECE (Q56254)» more
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UniProtKB/Swiss-Prot False negative sequences |
8 sequences
RPB9_CAEEL (Q965S0), RPB9_ENCCU (Q8SQU1), RPC10_BOVIN (Q2M2S7), RPC10_SCHPO (O13896), RPC10_YEAST (Q04307), TFS2_MIMIV (Q5UQS8), VF349_IIV3 (Q197A5), VF349_IIV6 (Q91FH5)» more |
PDB [Detailed view] |
296 PDB
1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6DRD; 6EXV; 6GMH; 6GML; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6O6C; 6O9L; 6RIE; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TED; 6TPS; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7B0Y; 7B7U; 7D58; 7D59; 7DN3; 7DU2; 7EDX; 7EG7; 7EG8; 7EG9; 7EGA; 7EGB; 7EGC; 7ENA; 7ENC; 7F4G; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7NVR; 7NVS; 7NVT; 7NVU; 7NVY; 7NVZ; 7NW0; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OKX; 7OKY; 7OL0; 7OO3; 7OOB; 7OOP; 7OPC; 7OPD; 7OZN; 7OZO; 7OZP; 7PKS; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7UNC; 7UND; 7VBA; 7VBB; 7VBC; 7YCX; 7ZS9; 7ZSA; 7ZSB; 7ZWD; 7ZX7; 7ZX8; 8A43; 8BVW; 8BYQ; 8BZ1; 8CEN; 8CEO; 8GXQ; 8GXS; 8IUE; 8IUH » more |