PROSITE entry PS00466

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General information about the entry

Entry name [info]	ZF_TFIIS_1
Accession [info]	PS00466
Entry type [info]	PATTERN
Date [info]	01-MAY-1991 CREATED; 01-APR-2006 DATA UPDATE; 13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00383

Name and characterization of the entry

Description [info]	Zinc finger TFIIS-type signature.
Pattern [info]	C-x(2)-C-x(9)-[LIVMQSART]-[QH]-[STQLMI]-[RA]-[SACR]-x-[DE]-[DET]- [PGSEAM]-x(6)-C-x(2,5)-C-x(3)-[FWE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.

Total number of hits	55 in 55 different sequences
Number of true positive hits	55 in 55 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	8
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	87.30 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Site [info]	zinc at position 1
Site [info]	zinc at position 3
Site [info]	zinc at position 15
Site [info]	zinc at position 17
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

55 sequences

081R_FRG3G  (Q6GZP4), RDO2_ARATH  (Q9ZVH8), RP30_MONPV  (A0A7H0DN39),

RP30_VACCA  (O57187), RP30_VACCC  (P21082), RP30_VACCW  (P21603), 
RP30_VAR67  (P33796), RPA12_BOVIN (Q1RMP0), RPA12_HUMAN (Q9P1U0), 
RPA12_MACMU (Q5TM50), RPA12_MOUSE (Q791N7), RPA12_PANTR (Q1XHV8), 
RPA12_RAT   (Q6MFY5), RPA12_SCHPO (O94703), RPA12_YEAST (P32529), 
RPB9_ASHGO  (Q755B3), RPB9_BOVIN  (Q32P73), RPB9_CANGA  (Q6FS48), 
RPB9_DROME  (P36958), RPB9_HUMAN  (P36954), RPB9_MOUSE  (P60898), 
RPB9_PIG(P60899), RPB9_SCHPO  (O74635), RPB9_YEAST  (P27999), 
RPC10_HUMAN (Q9Y2Y1), RPC10_MOUSE (Q9CQZ7), RPO5_FOWPN  (Q9J5C0), 
TCEA1_BOVIN (Q29RL9), TCEA1_DICDI (Q54YG9), TCEA1_HUMAN (P23193), 
TCEA1_MOUSE (P10711), TCEA1_RAT   (Q4KLL0), TCEA2_BOVIN (Q148K0), 
TCEA2_HUMAN (Q15560), TCEA2_MOUSE (Q9QVN7), TCEA2_RAT   (Q63799), 
TCEA3_BOVIN (Q2KI09), TCEA3_HUMAN (O75764), TCEA3_MOUSE (P23881), 
TFIIS_ASFB7 (P27948), TFIIS_ASFK5 (P0C8F5), TFIIS_ASFM2 (P0C8F6), 
TFIIS_ASFP4 (P0C8F7), TFIIS_ASFWA (P0C8F8), TFS1_SACS2  (Q980K2), 
TFS2_CAEEL  (P52652), TFS2_DROME  (P20232), TFS2_SCHPO  (P49373), 
TFS2_YEAST  (P07273), TFS_ARCFU   (O29033), TFS_METJA   (Q58548), 
TFS_METTH   (O27369), TFS_METTL   (Q9P9I8), TFS_SULAC   (Q07271), 
TFS_THECE   (Q56254)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

8 sequences

RPB9_CAEEL  (Q965S0), RPB9_ENCCU  (Q8SQU1), RPC10_BOVIN (Q2M2S7),

RPC10_SCHPO (O13896), RPC10_YEAST (Q04307), TFS2_MIMIV  (Q5UQS8), 
VF349_IIV3  (Q197A5), VF349_IIV6  (Q91FH5)

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PDB
[Detailed view]

296 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 4YM7; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OQJ; 5OQM; 5OT2; 5SVA; 5U0S; 5U5Q; 5VVR; 5VVS; 5W4U; 5W51; 5W5Y; 5W64; 5W65; 5W66; 6BLO; 6BLP; 6BM2; 6BM4; 6BQF; 6DRD; 6EXV; 6GMH; 6GML; 6GYK; 6GYL; 6GYM; 6H67; 6H68; 6HKO; 6HLQ; 6HLR; 6HLS; 6I84; 6O6C; 6O9L; 6RIE; 6RQH; 6RQL; 6RQT; 6RRD; 6RUI; 6RUO; 6RWE; 6TED; 6TPS; 6UPX; 6UPY; 6UPZ; 6UQ0; 6UQ1; 6UQ2; 6UQ3; 6XRE; 7A6H; 7AE1; 7AE3; 7AEA; 7AOC; 7AOD; 7AOE; 7AST; 7B0Y; 7B7U; 7D58; 7D59; 7DN3; 7DU2; 7EDX; 7EG7; 7EG8; 7EG9; 7EGA; 7EGB; 7EGC; 7ENA; 7ENC; 7F4G; 7FJI; 7FJJ; 7KED; 7KEE; 7KEF; 7LBM; 7MEI; 7MK9; 7MKA; 7ML0; 7ML1; 7ML2; 7ML4; 7NKX; 7NKY; 7NVR; 7NVS; 7NVT; 7NVU; 7NVY; 7NVZ; 7NW0; 7O4I; 7O4J; 7O72; 7O73; 7O75; 7OB9; 7OBA; 7OBB; 7OKX; 7OKY; 7OL0; 7OO3; 7OOB; 7OOP; 7OPC; 7OPD; 7OZN; 7OZO; 7OZP; 7PKS; 7RIM; 7RIP; 7RIQ; 7RIW; 7RIX; 7RIY; 7UI9; 7UIF; 7UIO; 7UNC; 7UND; 7VBA; 7VBB; 7VBC; 7YCX; 7ZS9; 7ZSA; 7ZSB; 7ZWD; 7ZX7; 7ZX8; 8A43; 8BVW; 8BYQ; 8BZ1; 8CEN; 8CEO; 8GXQ; 8GXS; 8IUE; 8IUH
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