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| Entry: PS00478 |
General information about the entry
| Entry name [info] | LIM_DOMAIN_1 |
| Accession [info] | PS00478 |
| Entry type [info] | PATTERN |
| Date [info] |
01-MAY-1991 CREATED;
01-DEC-2004 DATA UPDATE; 16-OCT-2019 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00382 |
Name and characterization of the entry
| Description [info] | LIM zinc-binding domain signature. |
| Pattern [info] |
C-x(2)-C-x(15,21)-[FYWHPCR]-H-x(2)-[CH]-x(2)-C-x(2)-C-x(3)-[LIVMF]. |
Numerical results [info]
| Total number of hits | 781 in 393 different sequences |
| Number of true positive hits | 780 in 392 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 7 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 99.87 % |
| Recall (true positives / (true positives + false negatives)) | 99.11 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 5 |
| Site [info] | zinc at position 1 |
| Site [info] | zinc at position 3 |
| Site [info] | zinc at position 6 |
| Site [info] | zinc at position 8 |
| Site [info] | zinc at position 10 |
| Site [info] | zinc at position 12 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
392 sequences
ABLM1_HUMAN (O14639 ), ABLM1_MOUSE (Q8K4G5 ), ABLM2_HUMAN (Q6H8Q1 ), ABLM2_MOUSE (Q8BL65 ), ABLM2_RAT (Q6KC51 ), ABLM3_HUMAN (O94929 ), ABLM3_MOUSE (Q69ZX8 ), AJUBA_BOVIN (E1BKA3 ), AJUBA_DROME (Q9VY77 ), AJUBA_HUMAN (Q96IF1 ), AJUBA_MOUSE (Q91XC0 ), AJUBA_RAT (Q5U2Z2 ), APTE_DROME (P29673 ), AWH_DROME (Q8IRC7 ), CRIP1_BOVIN (Q56K04 ), CRIP1_HUMAN (P50238 ), CRIP1_MOUSE (P63254 ), CRIP1_RAT (P63255 ), CRIP2_BOVIN (Q0VFX8 ), CRIP2_HUMAN (P52943 ), CRIP2_MOUSE (Q9DCT8 ), CRIP2_PONAB (Q5R7Y1 ), CRIP2_RAT (P36201 ), CRIP3_HUMAN (Q6Q6R5 ), CRIP3_MOUSE (Q6Q6R3 ), CSRP1_BOVIN (Q3MHY1 ), CSRP1_CHICK (P67966 ), CSRP1_COTJA (P67967 ), CSRP1_HUMAN (P21291 ), CSRP1_MOUSE (P97315 ), CSRP1_PONAB (Q5RCT4 ), CSRP1_RAT (P47875 ), CSRP2_BOVIN (Q32LE9 ), CSRP2_CHICK (P50460 ), CSRP2_COTJA (Q05158 ), CSRP2_HUMAN (Q16527 ), CSRP2_MOUSE (P97314 ), CSRP2_RAT (Q62908 ), CSRP3_BOVIN (Q4U0T9 ), CSRP3_HUMAN (P50461 ), CSRP3_MOUSE (P50462 ), CSRP3_RAT (P50463 ), DA1_ARATH (P0C7Q8 ), DAR1_ARATH (Q8W4F0 ), DAR2_ARATH (Q0WSN2 ), DAR4_ARATH (Q9FKN7 ), DAR5_ARATH (Q84WJ0 ), DAR6_ARATH (Q9FJX8 ), DAR7_ARATH (Q9FJX9 ), ESN_DROME (Q9U1I1 ), ESN_DROPS (Q292U5 ), FBLI1_BOVIN (Q1JQB5 ), FBLI1_HUMAN (Q8WUP2 ), FBLI1_MOUSE (Q71FD7 ), FBLI1_PONAB (Q5REN1 ), FHL1_HUMAN (Q13642 ), FHL1_MOUSE (P97447 ), FHL1_RAT (Q9WUH4 ), FHL2_BOVIN (Q2KI95 ), FHL2_HUMAN (Q14192 ), FHL2_MOUSE (O70433 ), FHL2_RAT (O35115 ), FHL3_BOVIN (Q3ZBI6 ), FHL3_HUMAN (Q13643 ), FHL3_MOUSE (Q9R059 ), FHL5_BOVIN (Q2YDK0 ), FHL5_HUMAN (Q5TD97 ), FHL5_MACFA (Q4R7A4 ), FHL5_MOUSE (Q9WTX7 ), FHL5_RAT (Q6AXT1 ), HIL_DROME (Q0E908 ), HM14_CAEEL (P20271 ), ISL1_CHICK (P50211 ), ISL1_DANRE (P53405 ), ISL1_HUMAN (P61371 ), ISL1_MESAU (P61373 ), ISL1_MOUSE (P61372 ), ISL1_RAT (P61374 ), ISL2A_DANRE (P53406 ), ISL2A_ONCTS (P53408 ), ISL2B_DANRE (P53407 ), ISL2B_ONCTS (P50212 ), ISL2_CHICK (P53410 ), ISL2_HUMAN (Q96A47 ), ISL2_MOUSE (Q9CXV0 ), ISL2_RAT (P50480 ), ISL3_ONCTS (P53409 ), LASP1_BOVIN (Q3B7M5 ), LASP1_DROME (Q8I7C3 ), LASP1_HUMAN (Q14847 ), LASP1_MOUSE (Q61792 ), LASP1_PONAB (Q5R5W0 ), LASP1_RABIT (O77506 ), LASP1_RAT (Q99MZ8 ), LDB3_HUMAN (O75112 ), LDB3_MOUSE (Q9JKS4 ), LHX1_CHICK (P53411 ), LHX1_DANRE (Q90476 ), LHX1_HUMAN (P48742 ), LHX1_MESAU (P63008 ), LHX1_MOUSE (P63006 ), LHX1_PANTR (Q5IS44 ), LHX1_RAT (P63007 ), LHX1_SAIBB (Q5IS89 ), LHX1_XENLA (P29674 ), LHX2_HUMAN (P50458 ), LHX2_MOUSE (Q9Z0S2 ), LHX2_RAT (P36198 ), LHX3_CHICK (P53412 ), LHX3_DANRE (Q90421 ), LHX3_HUMAN (Q9UBR4 ), LHX3_MOUSE (P50481 ), LHX3_PIG (O97581 ), LHX3_XENLA (P36200 ), LHX4_HUMAN (Q969G2 ), LHX4_MOUSE (P53776 ), LHX5_DANRE (P52889 ), LHX5_HUMAN (Q9H2C1 ), LHX5_MOUSE (P61375 ), LHX5_RAT (P61376 ), LHX5_XENLA (P37137 ), LHX6_HUMAN (Q9UPM6 ), LHX6_MOUSE (Q9R1R0 ), LHX8_HUMAN (Q68G74 ), LHX8_MOUSE (O35652 ), LHX9_ASTFA (A2I8Z7 ), LHX9_BOVIN (A0JNI8 ), LHX9_CHICK (Q90881 ), LHX9_DANRE (Q1LWV4 ), LHX9_HUMAN (Q9NQ69 ), LHX9_MOUSE (Q9WUH2 ), LHX9_RAT (Q80W90 ), LHX9_RUGRU (A2PZF9 ), LHX9_XENLA (Q68EY3 ), LIMA1_HUMAN (Q9UHB6 ), LIMA1_MOUSE (Q9ERG0 ), LIMA1_PIG (B0KYV5 ), LIMA1_RAT (F1LR10 ), LIMA_DICDI (Q54QR1 ), LIMB_DICDI (Q54NW4 ), LIMC1_HUMAN (Q9UPQ0 ), LIMC1_MOUSE (Q3UH68 ), LIMC1_XENLA (Q3KQW7 ), LIMCH_DICDI (Q55GV9 ), LIMC_DICDI (Q9BIW5 ), LIMD1_BOVIN (G5E5X0 ), LIMD1_HUMAN (Q9UGP4 ), LIMD1_MOUSE (Q9QXD8 ), LIMD1_RAT (B5DEH0 ), LIMD1_XENLA (Q06BR1 ), LIMD1_XENTR (B7ZUL2 ), LIMD2_BOVIN (Q1LZA7 ), LIMD2_HUMAN (Q9BT23 ), LIMD2_MOUSE (Q8BGB5 ), LIMD2_RAT (Q4KM31 ), LIMD_DICDI (Q9BIW4 ), LIME_DICDI (O60952 ), LIMF_DICDI (Q86I44 ), LIMG_DICDI (Q55DS4 ), LIMK1_CHICK (Q8QFP8 ), LIMK1_DROME (Q8IR79 ), LIMK1_HUMAN (P53667 ), LIMK1_MOUSE (P53668 ), LIMK1_RAT (P53669 ), LIMK1_XENLA (O42565 ), LIMK2_BOVIN (Q32L23 ), LIMK2_CHICK (P53666 ), LIMK2_HUMAN (P53671 ), LIMK2_MOUSE (O54785 ), LIMK2_RAT (P53670 ), LIMKA_DICDI (Q54L00 ), LIMKB_DICDI (P0CD62 ), LIMS1_HUMAN (P48059 ), LIMS1_MOUSE (Q99JW4 ), LIMS2_BOVIN (Q2KJ33 ), LIMS2_HUMAN (Q7Z4I7 ), LIMS2_MOUSE (Q91XD2 ), LIMS3_HUMAN (P0CW19 ), LIMS4_HUMAN (P0CW20 ), LIN11_CAEEL (P20154 ), LMCD1_BOVIN (Q17QE2 ), LMCD1_HUMAN (Q9NZU5 ), LMCD1_MOUSE (Q8VEE1 ), LMCD1_PIG (Q5PXT2 ), LMO3_BOVIN (Q2KIA3 ), LMO3_DANRE (Q503U0 ), LMO3_HUMAN (Q8TAP4 ), LMO3_MOUSE (Q8BZL8 ), LMO3_PONAB (Q5RBW7 ), LMO3_RAT (Q99MB5 ), LMO3_XENLA (Q9YH16 ), LMO41_XENTR (Q5FVB2 ), LMO42_XENTR (Q6DJ06 ), LMO4A_XENLA (Q8AW92 ), LMO4B_XENLA (Q801P0 ), LMO4_BOVIN (Q3SWZ8 ), LMO4_HUMAN (P61968 ), LMO4_MOUSE (P61969 ), LMO7_HUMAN (Q8WWI1 ), LMX1A_HUMAN (Q8TE12 ), LMX1A_MESAU (Q04650 ), LMX1A_MOUSE (Q9JKU8 ), LMX1B_CHICK (P53413 ), LMX1B_HUMAN (O60663 ), LMX1B_MESAU (Q60564 ), LMX1B_MOUSE (O88609 ), LMX1B_XENLA (Q8UVR3 ), LNEBL_MOUSE (Q9DC07 ), LPP_CHICK (Q5F464 ), LPP_HUMAN (Q93052 ), LPP_MOUSE (Q8BFW7 ), LPP_RAT (Q5XI07 ), LPXN_HUMAN (O60711 ), LPXN_MOUSE (Q99N69 ), LPXN_RABIT (Q9N261 ), LRG1_YEAST (P35688 ), MCA2B_DANRE (F1RA39 ), MCA3A_DANRE (F1QH17 ), MCA3B_DANRE (F1QWK4 ), MEC3_CAEBR (P34764 ), MEC3_CAEEL (P09088 ), MEC3_CAERE (P34765 ), MICA1_BOVIN (F1MH07 ), MICA1_DANRE (E7F9T0 ), MICA1_HUMAN (Q8TDZ2 ), MICA1_MOUSE (Q8VDP3 ), MICA1_RAT (D3ZBP4 ), MICA2_BOVIN (F1MF74 ), MICA2_HUMAN (O94851 ), MICA2_MOUSE (Q8BML1 ), MICA2_RAT (D4A1F2 ), MICA2_XENTR (F6QZ15 ), MICA3_BOVIN (G3MWR8 ), MICA3_HUMAN (Q7RTP6 ), MICA3_MOUSE (Q8CJ19 ), MILK1_BOVIN (E1BBG2 ), MILK1_HUMAN (Q8N3F8 ), MILK1_MOUSE (Q8BGT6 ), MILK1_RAT (D3ZQL6 ), MILK2_HUMAN (Q8IY33 ), MILK2_MOUSE (Q3TN34 ), MILK2_RAT (D3ZEN0 ), MLP1_DROME (P53777 ), MLP2_DROME (Q24400 ), NRAP_HUMAN (Q86VF7 ), NRAP_MOUSE (Q80XB4 ), PAXB_DICDI (Q8MML5 ), PAXI_CHICK (P49024 ), PAXI_HUMAN (P49023 ), PAXI_MOUSE (Q8VI36 ), PAXI_PONAB (Q5R7I1 ), PAXI_RAT (Q66H76 ), PDLI1_BOVIN (Q5E9E1 ), PDLI1_HUMAN (O00151 ), PDLI1_MOUSE (O70400 ), PDLI1_RAT (P52944 ), PDLI2_BOVIN (Q3T0C8 ), PDLI2_HUMAN (Q96JY6 ), PDLI2_MACFA (Q9GKU1 ), PDLI2_MOUSE (Q8R1G6 ), PDLI2_RAT (Q6AYD6 ), PDLI3_BOVIN (Q3SYZ8 ), PDLI3_CHICK (Q9PU47 ), PDLI3_HUMAN (Q53GG5 ), PDLI3_MOUSE (O70209 ), PDLI3_PIG (Q6QGC0 ), PDLI3_RAT (Q66HS7 ), PDLI3_XENLA (Q6GLJ6 ), PDLI4_BOVIN (Q3T005 ), PDLI4_CHICK (Q9PW72 ), PDLI4_HUMAN (P50479 ), PDLI4_MOUSE (P70271 ), PDLI4_RAT (P36202 ), PDLI5_HUMAN (Q96HC4 ), PDLI5_MOUSE (Q8CI51 ), PDLI5_RAT (Q62920 ), PDLI7_BOVIN (Q3SX40 ), PDLI7_CHICK (Q679P3 ), PDLI7_DANRE (Q6P7E4 ), PDLI7_HUMAN (Q9NR12 ), PDLI7_MOUSE (Q3TJD7 ), PDLI7_RAT (Q9Z1Z9 ), PDLI7_XENLA (Q6INU3 ), PIN2_CAEEL (Q19157 ), PLI2A_ARATH (O80839 ), PLI2B_ARATH (Q1ECF5 ), PLI2B_ORYSJ (Q7F9R9 ), PLI2C_ARATH (Q500W4 ), PRC3A_XENLA (A8WH69 ), PRC3B_XENLA (A0A1L8F1M4), PRI1A_XENLA (Q90Z06 ), PRI1B_XENLA (Q90WV2 ), PRIC1_AEDAE (Q174I2 ), PRIC1_ANOGA (Q7QJT4 ), PRIC1_DROME (A1Z6W3 ), PRIC1_DROPS (Q292U2 ), PRIC1_HUMAN (Q96MT3 ), PRIC1_MOUSE (Q3U5C7 ), PRIC1_RAT (Q71QF9 ), PRIC1_XENTR (Q28FG2 ), PRIC2_HUMAN (Q7Z3G6 ), PRIC2_MOUSE (Q80Y24 ), PRIC3_HUMAN (O43900 ), PRIC3_MOUSE (Q80VL3 ), PRIC4_HUMAN (Q2TBC4 ), PXL1_CAEEL (Q09476 ), PXL1_YEAST (P36166 ), RBTN1_BOVIN (Q0P5B3 ), RBTN1_DANRE (Q8JFQ2 ), RBTN1_HUMAN (P25800 ), RBTN1_MOUSE (Q924W9 ), RBTN1_XENLA (Q3B8H4 ), RBTN2_BOVIN (Q1LZ94 ), RBTN2_DANRE (Q9PTJ3 ), RBTN2_HUMAN (P25791 ), RBTN2_MOUSE (P25801 ), RBTN2_XENLA (Q90XH3 ), RBTN2_XENTR (Q5M8V8 ), RGA1_SCHPO (O43052 ), RGA1_YEAST (P39083 ), RGA2_YEAST (Q06407 ), RGA3_SCHPO (O14014 ), RGA4_SCHPO (O74360 ), SCEL_HUMAN (O95171 ), SCEL_MOUSE (Q9EQG3 ), SF3_HELAN (P29675 ), TES_AOTNA (Q07DW1 ), TES_ATEAB (Q00PK1 ), TES_ATEGE (Q09YL5 ), TES_BOVIN (Q2YDE9 ), TES_CALJA (Q2QLG8 ), TES_CANLF (A0M8U6 ), TES_CHICK (Q90YH9 ), TES_CHLAE (Q2IBA3 ), TES_COLGU (Q07DZ4 ), TES_DASNO (Q07E51 ), TES_EULMM (Q2IBH0 ), TES_FELCA (A0M8S5 ), TES_HORSE (Q2QLB2 ), TES_HUMAN (Q9UGI8 ), TES_LOXAF (Q108U9 ), TES_MICMU (Q2QL92 ), TES_MONDO (Q2QLA1 ), TES_MOUSE (P47226 ), TES_MUNMU (Q09YK3 ), TES_MUNRE (Q07DX3 ), TES_MUSPF (Q07E27 ), TES_NEONE (Q07E40 ), TES_NOMLE (Q07DY3 ), TES_OTOGA (Q2QLH9 ), TES_PANTR (Q2QLF4 ), TES_PAPAN (A0M8R4 ), TES_PIG (Q2QLE3 ), TES_PLEMO (Q2QLC3 ), TES_PONAB (Q5RC52 ), TES_RABIT (Q09YN8 ), TES_RAT (Q2LAP6 ), TES_RHIFE (Q2IBC3 ), TES_SAIBB (Q09YI0 ), TES_SHEEP (Q09YJ2 ), TES_XENLA (Q7ZXE9 ), TES_XENTR (Q6DIR5 ), TGFI1_BOVIN (Q3MHZ4 ), TGFI1_HUMAN (O43294 ), TGFI1_MOUSE (Q62219 ), TGFI1_RAT (Q99PD6 ), TGFI1_XENLA (Q2TCH4 ), TRIP6_BOVIN (Q3SX26 ), TRIP6_HUMAN (Q15654 ), TRIP6_MOUSE (Q9Z1Y4 ), TTX3_CAEEL (G5EE86 ), UNC95_CAEEL (Q9NEZ5 ), UNC97_CAEEL (P50464 ), WLI2A_ARATH (O04193 ), WLI2B_ARATH (Q9M047 ), WLIM1_ARATH (Q94JX5 ), WTIP_DANRE (A8DZE6 ), WTIP_HUMAN (A6NIX2 ), WTIP_MOUSE (Q7TQJ8 ), WTIP_XENLA (A9LS46 ), XIRP2_MOUSE (Q4U4S6 ), Y6787_DICDI (Q55BI0 ), YOCC_SCHPO (O74398 ), ZASP_DROME (A1ZA47 ), ZN185_HUMAN (O15231 ), ZN185_MOUSE (Q62394 ), ZYX_CAEEL (Q9U3F4 ), ZYX_CHICK (Q04584 ), ZYX_HUMAN (Q15942 ), ZYX_MOUSE (Q62523 ), ZYX_XENLA (A5H447 ), ZYX_XENTR (Q0VA45 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
7 sequences
ADCE_DICDI (Q55GN8 ), HEL2_SCHPO (Q76PD2 ), HEL2_YEAST (Q05580 ), LASP1_CAEEL (P34416 ), LHX3_HALRO (Q25132 ), MICAL_DROME (Q86BA1 ), Y2098_DICDI (Q55A66 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
LASP1_PIG (P80171 ) |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
YEMC_SCHPO (O14033 ) |
| PDB [Detailed view] |
63 PDB
1A7I; 1B8T; 1CTL; 1CXX; 1G47; 1IBI; 1IML; 1J2O; 1M3V; 1NYP; 1QLI; 1RUT; 1U5S; 1V6G; 1WIG; 1WYH; 1X3H; 1X4K; 1X4L; 1X61; 1X62; 1X63; 1X64; 1X68; 1X6A; 2CO8; 2COR; 2CU8; 2CUP; 2CUQ; 2CUR; 2D8X; 2D8Y; 2D8Z; 2DFY; 2DJ7; 2DLO; 2EGQ; 2EHE; 2JTN; 2KBX; 2L4Z; 2L6Y; 2L6Z; 2LXD; 2LZU; 2MBV; 2MIU; 2O10; 2O13; 2RGT; 2XJY; 2XJZ; 2XQN; 2YPA; 3F6Q; 3IXE; 3MMK; 4HI8; 4HI9; 4JCJ; 4KFZ; 6CME » more |
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