PROSITE entry PS00502
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General information about the entry
| Entry name [info] | POLYGALACTURONASE |
| Accession [info] | PS00502 |
| Entry type [info] | PATTERN |
| Date [info] |
01-MAY-1991 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00415 |
| Associated ProRule [info] | PRU10052 |
Name and characterization of the entry
| Description [info] | Polygalacturonase active site. |
| Pattern [info] |
[GSDENKRH]-x(2)-[VMFC]-x(2)-[GS]-H-G-[LIVMAG]-x(1,2)-[LIVM]-G-S. |
Numerical results [info]
| Total number of hits | 108 in 108 different sequences |
| Number of true positive hits | 108 in 108 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 54 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 66.67 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | active_site at position 6 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
108 sequences
ADPG1_ARATH (O23147), ADPG2_ARATH (Q8RY29), PEHX_DICCH (P15922), PGLR1_ARATH (P49062), PGLR1_ASPAC (O74213), PGLR1_ASPCL (A1CIV8), PGLR1_ASPFN (B8N8M2), PGLR1_ASPNC (A2QAH3), PGLR1_ASPNG (P26213), PGLR1_ASPOR (Q2UHL4), PGLR1_ASPTN (Q0CMU3), PGLR1_COLLN (Q00446), PGLR1_MAIZE (P26216), PGLR1_PECCC (P18192), PGLR1_PENOL (Q9Y834), PGLR1_SCLSC (Q12708), PGLR2_ARATH (P49063), PGLR2_ASPAC (Q70HJ4), PGLR2_ASPAW (Q9P359), PGLR2_ASPKW (Q8NK98), PGLR2_ASPNA (P26214), PGLR2_ASPNC (A2R5S4), PGLR2_ASPNG (P0CU55), PGLR2_ASPTU (P0CU54), PGLR2_CHAOB (Q7M1E7), PGLR2_CRYJA (P43212), PGLR2_JUNAS (Q9FY19), PGLR2_MAIZE (P35338), PGLR2_PECPM (P26509), PGLR2_PENOL (Q9Y833), PGLR3_ARATH (Q9LW07), PGLR3_MAIZE (P35339), PGLR4_ARATH (Q949Z1), PGLR5_ARATH (Q94AJ5), PGLRA_ASPAW (Q9P358), PGLRA_ASPFA (P41749), PGLRA_ASPFC (B0Y4Z4), PGLRA_ASPFU (Q4WQT2), PGLRA_ASPKW (Q8NK99), PGLRA_ASPNC (A2R8F8), PGLRA_ASPNG (Q9P4W4), PGLRA_ASPPA (P49575), PGLRA_NEOFI (A1CVV8), PGLRB_ASPFA (P41750), PGLRB_ASPFC (B0YAH0), PGLRB_ASPFN (B8N7Z8), PGLRB_ASPFU (Q4WBE1), PGLRB_ASPKA (Q1HAY5), PGLRB_ASPNC (A2QCV8), PGLRB_ASPNG (Q9P4W3), PGLRB_ASPOR (P35335), PGLRB_EMENI (Q5B508), PGLRB_NEOFI (A1DAQ2), PGLRD_ASPFN (B8MW78), PGLRD_ASPNC (A2QTU0), PGLRD_ASPNG (Q9P4W2), PGLRD_ASPOR (Q2UT29), PGLRD_EMENI (Q5AYH4), PGLRD_NEOFI (A1DBR6), PGLRE_ASPNC (A2QBB6), PGLRE_ASPNG (O42809), PGLRX_ASPFC (B0YDE8), PGLRX_ASPFN (B8NG16), PGLRX_ASPFU (Q4WCZ8), PGLRX_ASPNC (A2R060), PGLRX_ASPNG (Q27UB3), PGLRX_ASPTN (Q0CGP0), PGLRX_ASPTU (Q00293), PGLRX_COCCA (Q00359), PGLRX_NEOFI (A1DLC1), PGLR_ACTDE (P35336), PGLR_ASPFC (B0XPA1), PGLR_ASPFU (Q4WR80), PGLR_BRANA (P35337), PGLR_COCCA (P26215), PGLR_CUPSE (C0HKB1), PGLR_EMENI (Q5ATQ3), PGLR_GIBFU (Q07181), PGLR_GOSBA (Q39766), PGLR_GOSHI (Q39786), PGLR_MALDO (P48978), PGLR_MEDSA (Q40312), PGLR_NEOFI (A1D145), PGLR_OENOR (P24548), PGLR_PENDI (Q9Y718), PGLR_PENEN (O59925), PGLR_PENGR (O93883), PGLR_PENJA (O42824), PGLR_PERAE (Q02096), PGLR_PRUPE (P48979), PGLR_RALN1 (P58598), PGLR_RALSL (P20041), PGLR_RHIRD (P27644), PGLR_SOLLC (P05117), PGLR_TOBAC (Q05967), PGLR_YEAST (P47180), PGLX1_EMENI (Q5ASG9), PGLX2_EMENI (Q5ARN5), PGXA_ASPNC (A2QW66), PGXA_ASPNG (Q27UB2), QRT2_ARATH (Q9SFB7), SALK6_KALTU (W8P8Q3), XGHA_ASPFC (B0Y9F8), XGHA_ASPFN (B8NPS8), XGHA_ASPFU (Q4WBT4), XGHA_ASPOR (Q2UBD8), XGHA_EMENI (Q5B7U1), XGHA_NEOFI (A1DBT5)» more
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| UniProtKB/Swiss-Prot False negative sequences |
54 sequences
PGLR2_PLAAC (Q6H9K0), PGLR6_ARATH (O22818), PGLRC_ASPAC (Q70HJ3), PGLRC_ASPNC (A2QL39), PGLRC_ASPNG (Q12554), PGLR_PHACE (O97400), PGLR_VITVI (A7PZL3), PGXB_ASPFC (B0YAA4), PGXB_ASPFN (B8NX60), PGXB_ASPFU (Q4WBK6), PGXB_ASPNC (A2QHG0), PGXB_ASPNG (Q27UB1), PGXB_ASPOR (Q2TW03), PGXB_ASPTN (Q0C7H7), PGXB_EMENI (Q873X6), PGXB_NEOFI (A1DAX2), PGXC_ASPFC (B0XYC4), PGXC_ASPFN (B8MZZ6), PGXC_ASPFU (Q4WX94), PGXC_ASPNC (A2QEW2), PGXC_ASPNG (Q27UB0), PGXC_ASPOR (Q2UQ40), PGXC_ASPTN (Q0CXI3), PGXC_NEOFI (A1D7I1), RGXA_ASPFN (B8NJB0), RGXA_ASPNC (A2QBB4), RGXA_ASPNG (Q2EQQ2), RGXA_ASPOR (Q2UP32), RGXB_ASPNC (A2QG68), RGXC_ASPNC (A2RAY7), RGXC_NEOFI (A1D415), RHGA_ASPAC (Q00001), RHGA_ASPFN (B8NK45), RHGA_ASPNC (A2QYE5), RHGA_ASPNG (P87160), RHGA_ASPOR (Q2U293), RHGA_EMENI (Q5ARE6), RHGB_ASPFC (B0Y0Q3), RHGB_ASPFU (Q4WV23), RHGB_ASPNC (A2R3G4), RHGB_ASPNG (P87161), RHGB_ASPOR (Q2TWN8), RHGB_ASPTN (Q0CFC7), RHGB_NEOFI (A1DED1), RHGC_ASPFN (B8NGP8), RHGC_ASPNC (A2QLQ5), RHGC_ASPOR (Q2UFD2), RHGD_ASPNC (A2QWT2), RHGE_ASPFN (B8NKB9), RHGE_ASPNC (A2QXE8), RHGE_ASPNG (Q1ZZM3), RHGE_ASPOR (Q2U7A4), XGHA_ASPNC (A2QK83), XGHA_ASPTU (Q9UUZ2)» more |
| PDB [Detailed view] |
7 PDB
1BHE; 1CZF; 1HG8; 1IA5; 1IB4; 1NHC; 7B8B |