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Entry: PS00502

General information about the entry

Entry name [info] POLYGALACTURONASE
Accession [info] PS00502
Entry type [info] PATTERN
Date [info] 01-MAY-1991 CREATED;
01-NOV-1997 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00415
Associated ProRule [info] PRU10052

Name and characterization of the entry

Description [info] Polygalacturonase active site.
Pattern [info] 
[GSDENKRH]-x(2)-[VMFC]-x(2)-[GS]-H-G-[LIVMAG]-x(1,2)-[LIVM]-G-S.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 108 in 108 different sequences
Number of true positive hits 108 in 108 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 54
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 66.67 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 108 sequences 

ADPG1_ARATH (O23147    ), ADPG2_ARATH (Q8RY29    ), PEHX_DICCH  (P15922    ), 

PGLR1_ARATH (P49062    ), PGLR1_ASPAC (O74213    ), PGLR1_ASPCL (A1CIV8    ), 
PGLR1_ASPFN (B8N8M2    ), PGLR1_ASPNC (A2QAH3    ), PGLR1_ASPNG (P26213    ), 
PGLR1_ASPOR (Q2UHL4    ), PGLR1_ASPTN (Q0CMU3    ), PGLR1_COLLN (Q00446    ), 
PGLR1_MAIZE (P26216    ), PGLR1_PECCC (P18192    ), PGLR1_PENOL (Q9Y834    ), 
PGLR1_SCLSC (Q12708    ), PGLR2_ARATH (P49063    ), PGLR2_ASPAC (Q70HJ4    ), 
PGLR2_ASPAW (Q9P359    ), PGLR2_ASPKW (Q8NK98    ), PGLR2_ASPNA (P26214    ), 
PGLR2_ASPNC (A2R5S4    ), PGLR2_ASPNG (P0CU55    ), PGLR2_ASPTU (P0CU54    ), 
PGLR2_CHAOB (Q7M1E7    ), PGLR2_CRYJA (P43212    ), PGLR2_JUNAS (Q9FY19    ), 
PGLR2_MAIZE (P35338    ), PGLR2_PECPM (P26509    ), PGLR2_PENOL (Q9Y833    ), 
PGLR3_ARATH (Q9LW07    ), PGLR3_MAIZE (P35339    ), PGLR4_ARATH (Q949Z1    ), 
PGLR5_ARATH (Q94AJ5    ), PGLRA_ASPAW (Q9P358    ), PGLRA_ASPFA (P41749    ), 
PGLRA_ASPFC (B0Y4Z4    ), PGLRA_ASPFU (Q4WQT2    ), PGLRA_ASPKW (Q8NK99    ), 
PGLRA_ASPNC (A2R8F8    ), PGLRA_ASPNG (Q9P4W4    ), PGLRA_ASPPA (P49575    ), 
PGLRA_NEOFI (A1CVV8    ), PGLRB_ASPFA (P41750    ), PGLRB_ASPFC (B0YAH0    ), 
PGLRB_ASPFN (B8N7Z8    ), PGLRB_ASPFU (Q4WBE1    ), PGLRB_ASPKA (Q1HAY5    ), 
PGLRB_ASPNC (A2QCV8    ), PGLRB_ASPNG (Q9P4W3    ), PGLRB_ASPOR (P35335    ), 
PGLRB_EMENI (Q5B508    ), PGLRB_NEOFI (A1DAQ2    ), PGLRD_ASPFN (B8MW78    ), 
PGLRD_ASPNC (A2QTU0    ), PGLRD_ASPNG (Q9P4W2    ), PGLRD_ASPOR (Q2UT29    ), 
PGLRD_EMENI (Q5AYH4    ), PGLRD_NEOFI (A1DBR6    ), PGLRE_ASPNC (A2QBB6    ), 
PGLRE_ASPNG (O42809    ), PGLRX_ASPFC (B0YDE8    ), PGLRX_ASPFN (B8NG16    ), 
PGLRX_ASPFU (Q4WCZ8    ), PGLRX_ASPNC (A2R060    ), PGLRX_ASPNG (Q27UB3    ), 
PGLRX_ASPTN (Q0CGP0    ), PGLRX_ASPTU (Q00293    ), PGLRX_COCCA (Q00359    ), 
PGLRX_NEOFI (A1DLC1    ), PGLR_ACTDE  (P35336    ), PGLR_ASPFC  (B0XPA1    ), 
PGLR_ASPFU  (Q4WR80    ), PGLR_BRANA  (P35337    ), PGLR_COCCA  (P26215    ), 
PGLR_CUPSE  (C0HKB1    ), PGLR_EMENI  (Q5ATQ3    ), PGLR_GIBFU  (Q07181    ), 
PGLR_GOSBA  (Q39766    ), PGLR_GOSHI  (Q39786    ), PGLR_MALDO  (P48978    ), 
PGLR_MEDSA  (Q40312    ), PGLR_NEOFI  (A1D145    ), PGLR_OENOR  (P24548    ), 
PGLR_PENDI  (Q9Y718    ), PGLR_PENEN  (O59925    ), PGLR_PENGR  (O93883    ), 
PGLR_PENJA  (O42824    ), PGLR_PERAE  (Q02096    ), PGLR_PRUPE  (P48979    ), 
PGLR_RALSL  (P20041    ), PGLR_RALSO  (P58598    ), PGLR_RHIRD  (P27644    ), 
PGLR_SOLLC  (P05117    ), PGLR_TOBAC  (Q05967    ), PGLR_YEAST  (P47180    ), 
PGLX1_EMENI (Q5ASG9    ), PGLX2_EMENI (Q5ARN5    ), PGXA_ASPNC  (A2QW66    ), 
PGXA_ASPNG  (Q27UB2    ), QRT2_ARATH  (Q9SFB7    ), SALK6_KALTU (W8P8Q3    ), 
XGHA_ASPFC  (B0Y9F8    ), XGHA_ASPFN  (B8NPS8    ), XGHA_ASPFU  (Q4WBT4    ), 
XGHA_ASPOR  (Q2UBD8    ), XGHA_EMENI  (Q5B7U1    ), XGHA_NEOFI  (A1DBT5    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 54 sequences 

PGLR2_PLAAC (Q6H9K0    ), PGLR6_ARATH (O22818    ), PGLRC_ASPAC (Q70HJ3    ), 

PGLRC_ASPNC (A2QL39    ), PGLRC_ASPNG (Q12554    ), PGLR_PHACE  (O97400    ), 
PGLR_VITVI  (A7PZL3    ), PGXB_ASPFC  (B0YAA4    ), PGXB_ASPFN  (B8NX60    ), 
PGXB_ASPFU  (Q4WBK6    ), PGXB_ASPNC  (A2QHG0    ), PGXB_ASPNG  (Q27UB1    ), 
PGXB_ASPOR  (Q2TW03    ), PGXB_ASPTN  (Q0C7H7    ), PGXB_EMENI  (Q873X6    ), 
PGXB_NEOFI  (A1DAX2    ), PGXC_ASPFC  (B0XYC4    ), PGXC_ASPFN  (B8MZZ6    ), 
PGXC_ASPFU  (Q4WX94    ), PGXC_ASPNC  (A2QEW2    ), PGXC_ASPNG  (Q27UB0    ), 
PGXC_ASPOR  (Q2UQ40    ), PGXC_ASPTN  (Q0CXI3    ), PGXC_NEOFI  (A1D7I1    ), 
RGXA_ASPFN  (B8NJB0    ), RGXA_ASPNC  (A2QBB4    ), RGXA_ASPNG  (Q2EQQ2    ), 
RGXA_ASPOR  (Q2UP32    ), RGXB_ASPNC  (A2QG68    ), RGXC_ASPNC  (A2RAY7    ), 
RGXC_NEOFI  (A1D415    ), RHGA_ASPAC  (Q00001    ), RHGA_ASPFN  (B8NK45    ), 
RHGA_ASPNC  (A2QYE5    ), RHGA_ASPNG  (P87160    ), RHGA_ASPOR  (Q2U293    ), 
RHGA_EMENI  (Q5ARE6    ), RHGB_ASPFC  (B0Y0Q3    ), RHGB_ASPFU  (Q4WV23    ), 
RHGB_ASPNC  (A2R3G4    ), RHGB_ASPNG  (P87161    ), RHGB_ASPOR  (Q2TWN8    ), 
RHGB_ASPTN  (Q0CFC7    ), RHGB_NEOFI  (A1DED1    ), RHGC_ASPFN  (B8NGP8    ), 
RHGC_ASPNC  (A2QLQ5    ), RHGC_ASPOR  (Q2UFD2    ), RHGD_ASPNC  (A2QWT2    ), 
RHGE_ASPFN  (B8NKB9    ), RHGE_ASPNC  (A2QXE8    ), RHGE_ASPNG  (Q1ZZM3    ), 
RHGE_ASPOR  (Q2U7A4    ), XGHA_ASPNC  (A2QK83    ), XGHA_ASPTU  (Q9UUZ2    )
» more

PDB
[Detailed view]		 6 PDB

1BHE; 1CZF; 1HG8; 1IA5; 1IB4; 1NHC

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