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Entry: PS00519

General information about the entry

Entry name [info] HTH_ASNC_1
Accession [info] PS00519
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-DEC-2001 DATA UPDATE;
13-FEB-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC00520

Name and characterization of the entry

Description [info] AsnC-type HTH domain signature.
Pattern [info]
[GSTAP]-x(2)-[DNEQA]-[LIVM]-[GSA]-x(2)-[LIVMFYT]-[GAN]-[LIVMST]-[ST]-
x(6)-R-[LIVT]-x(2)-[LIVM]-x(3)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_02 which contains 559'228 sequence entries.


Total number of hits 43 in 43 different sequences
Number of true positive hits 39 in 39 different sequences
Number of 'unknown' hits 0
Number of false positive hits 4 in 4 different sequences
Number of false negative sequences 28
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 90.70 %
Recall (true positives / (true positives + false negatives)) 58.21 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
39 sequences

ASNC_ECO57  (P0ACI8    ), ASNC_ECOL6  (P0ACI7    ), ASNC_ECOLI  (P0ACI6    ), 
ASNC_HAEIN  (P44337    ), ASNC_SHIFL  (P0ACI9    ), AZLB_BACSU  (O07920    ), 
BKDR_PSEPU  (P42179    ), DECR_ECO57  (P0ACJ7    ), DECR_ECOL6  (P0ACJ6    ), 
DECR_ECOLI  (P0ACJ5    ), GRP_ZYMMA   (F8DT92    ), GRP_ZYMMO   (P0DJA5    ), 
LRP_ECO57   (P0ACJ2    ), LRP_ECOL6   (P0ACJ1    ), LRP_ECOLI   (P0ACJ0    ), 
LRP_HAEIN   (P45265    ), LRP_KLEAE   (P0ACJ4    ), LRP_KLEPN   (P37424    ), 
LRP_RHIME   (P56901    ), LRP_SALTY   (P0A2S0    ), LRP_SERMA   (P37425    ), 
LRP_SHIFL   (P0ACJ3    ), PTR1_METJA  (Q57615    ), PTR2_METJA  (Q58133    ), 
PUTR_RHIRD  (Q44333    ), PUTR_RHOCA  (Q52710    ), REG1_PYRAB  (Q9V2M0    ), 
REG1_PYRFU  (Q8U4M7    ), REG1_PYRHO  (O57818    ), REG2_PYRAB  (Q9V2K6    ), 
REG2_PYRHO  (O57802    ), REG7_PYRAB  (Q9V159    ), REG7_PYRFU  (P42180    ), 
REG7_PYRHO  (O59256    ), Y224_HAEIN  (P44580    ), Y4TD_SINFN  (P55658    ), 
YEZC_BACSU  (O31497    ), ZRP_ZYMMA   (F8DT24    ), ZRP_ZYMMO   (P0DJA6    )
» more

UniProtKB/Swiss-Prot
False negative sequences
28 sequences

BKDR_PSEAE  (Q9I1M3    ), DOEX_HALED  (E1V7V9    ), LRPA_BACSU  (P96652    ), 
LRPB_BACSU  (P96653    ), LRPC_BACSU  (P96582    ), LRS14_SACS2 (O93774    ), 
LYSM_SACS2  (Q980W9    ), LYSM_SULTO  (Q976J7    ), REG2_PYRFU  (Q8TZE2    ), 
REG3_PYRAB  (Q9V2D7    ), REG3_PYRFU  (Q8U1H7    ), REG3_PYRHO  (O57880    ), 
REG4_PYRAB  (Q9V029    ), REG4_PYRFU  (Q8U2H1    ), REG4_PYRHO  (O58741    ), 
REG5_PYRHO  (O58782    ), REG6_PYRAB  (Q9V0Y9    ), REG6_PYRFU  (Q8U0P3    ), 
REG6_PYRHO  (O59188    ), REG8_PYRAB  (Q9V1E5    ), REG8_PYRFU  (Q8U067    ), 
REG8_PYRHO  (O59309    ), REG9_PYRAB  (Q9UY16    ), REG9_PYRFU  (Q8U445    ), 
REG9_PYRHO  (O59579    ), Y4SM_SINFN  (P50337    ), YUGG_BACSU  (O05236    ), 
YWRC_BACSU  (O05217    )
» more

UniProtKB/Swiss-Prot
False positive sequences
4 sequences

ACAC_DICDI  (Q54J08    ), KTU_XENTR   (Q0P4V4    ), LEXA_DESAG  (Q314F2    ), 
NIRG_PSEST  (Q52524    )
» more

PDB
[Detailed view]
5 PDB

1I1G; 2CG4; 2DBB; 2GQQ; 2L4A

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