PROSITE entry PS00519
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | HTH_ASNC_1 |
| Accession [info] | PS00519 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-DEC-2001 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00520 |
Name and characterization of the entry
| Description [info] | AsnC-type HTH domain signature. |
| Pattern [info] |
[GSTAP]-x(2)-[DNEQA]-[LIVM]-[GSA]-x(2)-[LIVMFYT]-[GAN]-[LIVMST]-[ST]- x(6)-R-[LIVT]-x(2)-[LIVM]-x(3)-G. |
Numerical results [info]
| Total number of hits | 44 in 44 different sequences |
| Number of true positive hits | 39 in 39 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 28 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 88.64 % |
| Recall (true positives / (true positives + false negatives)) | 58.21 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
39 sequences
ASNC_ECO57 (P0ACI8), ASNC_ECOL6 (P0ACI7), ASNC_ECOLI (P0ACI6), ASNC_HAEIN (P44337), ASNC_SHIFL (P0ACI9), AZLB_BACSU (O07920), BKDR_PSEPU (P42179), DECR_ECO57 (P0ACJ7), DECR_ECOL6 (P0ACJ6), DECR_ECOLI (P0ACJ5), GRP_ZYMMA (F8DT92), GRP_ZYMMO (P0DJA5), LRP_ECO57 (P0ACJ2), LRP_ECOL6 (P0ACJ1), LRP_ECOLI (P0ACJ0), LRP_HAEIN (P45265), LRP_KLEAE (P0ACJ4), LRP_KLEPN (P37424), LRP_RHIME (P56901), LRP_SALTY (P0A2S0), LRP_SERMA (P37425), LRP_SHIFL (P0ACJ3), PTR1_METJA (Q57615), PTR2_METJA (Q58133), PUTR_RHIRD (Q44333), PUTR_RHOCA (Q52710), REG1_PYRAB (Q9V2M0), REG1_PYRFU (Q8U4M7), REG1_PYRHO (O57818), REG2_PYRAB (Q9V2K6), REG2_PYRHO (O57802), REG7_PYRAB (Q9V159), REG7_PYRFU (P42180), REG7_PYRHO (O59256), Y224_HAEIN (P44580), Y4TD_SINFN (P55658), YEZC_BACSU (O31497), ZRP_ZYMMA (F8DT24), ZRP_ZYMMO (P0DJA6)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
28 sequences
BKDR_PSEAE (Q9I1M3), DOEX_HALED (E1V7V9), LRPA_BACSU (P96652), LRPB_BACSU (P96653), LRPC_BACSU (P96582), LRS14_SACS2 (O93774), LYSM_SACS2 (Q980W9), LYSM_SULTO (Q976J7), REG2_PYRFU (Q8TZE2), REG3_PYRAB (Q9V2D7), REG3_PYRFU (Q8U1H7), REG3_PYRHO (O57880), REG4_PYRAB (Q9V029), REG4_PYRFU (Q8U2H1), REG4_PYRHO (O58741), REG5_PYRHO (O58782), REG6_PYRAB (Q9V0Y9), REG6_PYRFU (Q8U0P3), REG6_PYRHO (O59188), REG8_PYRAB (Q9V1E5), REG8_PYRFU (Q8U067), REG8_PYRHO (O59309), REG9_PYRAB (Q9UY16), REG9_PYRFU (Q8U445), REG9_PYRHO (O59579), Y4SM_SINFN (P50337), YUGG_BACSU (O05236), YWRC_BACSU (O05217)» more |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
ACAC_DICDI (Q54J08), KTU_XENTR (Q0P4V4), LEXA_OLEA2 (Q314F2), NIRDL_PARPN (I6UH61), NIRG_STUST (Q52524)» more |
| PDB [Detailed view] |
5 PDB
1I1G; 2CG4; 2DBB; 2GQQ; 2L4A |