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PROSITE entry PS00519


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General information about the entry

Entry name [info] HTH_ASNC_1
Accession [info] PS00519
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-DEC-2001 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00520

Name and characterization of the entry

Description [info] AsnC-type HTH domain signature.
Pattern [info]
[GSTAP]-x(2)-[DNEQA]-[LIVM]-[GSA]-x(2)-[LIVMFYT]-[GAN]-[LIVMST]-[ST]-
x(6)-R-[LIVT]-x(2)-[LIVM]-x(3)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 44 in 44 different sequences
Number of true positive hits 39 in 39 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 28
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 88.64 %
Recall (true positives / (true positives + false negatives)) 58.21 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
39 sequences

ASNC_ECO57  (P0ACI8), ASNC_ECOL6  (P0ACI7), ASNC_ECOLI  (P0ACI6), 
ASNC_HAEIN  (P44337), ASNC_SHIFL  (P0ACI9), AZLB_BACSU  (O07920), 
BKDR_PSEPU  (P42179), DECR_ECO57  (P0ACJ7), DECR_ECOL6  (P0ACJ6), 
DECR_ECOLI  (P0ACJ5), GRP_ZYMMA   (F8DT92), GRP_ZYMMO   (P0DJA5), 
LRP_ECO57   (P0ACJ2), LRP_ECOL6   (P0ACJ1), LRP_ECOLI   (P0ACJ0), 
LRP_HAEIN   (P45265), LRP_KLEAE   (P0ACJ4), LRP_KLEPN   (P37424), 
LRP_RHIME   (P56901), LRP_SALTY   (P0A2S0), LRP_SERMA   (P37425), 
LRP_SHIFL   (P0ACJ3), PTR1_METJA  (Q57615), PTR2_METJA  (Q58133), 
PUTR_RHIRD  (Q44333), PUTR_RHOCA  (Q52710), REG1_PYRAB  (Q9V2M0), 
REG1_PYRFU  (Q8U4M7), REG1_PYRHO  (O57818), REG2_PYRAB  (Q9V2K6), 
REG2_PYRHO  (O57802), REG7_PYRAB  (Q9V159), REG7_PYRFU  (P42180), 
REG7_PYRHO  (O59256), Y224_HAEIN  (P44580), Y4TD_SINFN  (P55658), 
YEZC_BACSU  (O31497), ZRP_ZYMMA   (F8DT24), ZRP_ZYMMO   (P0DJA6)
» more

UniProtKB/Swiss-Prot
False negative sequences
28 sequences

BKDR_PSEAE  (Q9I1M3), DOEX_HALED  (E1V7V9), LRPA_BACSU  (P96652), 
LRPB_BACSU  (P96653), LRPC_BACSU  (P96582), LRS14_SACS2 (O93774), 
LYSM_SACS2  (Q980W9), LYSM_SULTO  (Q976J7), REG2_PYRFU  (Q8TZE2), 
REG3_PYRAB  (Q9V2D7), REG3_PYRFU  (Q8U1H7), REG3_PYRHO  (O57880), 
REG4_PYRAB  (Q9V029), REG4_PYRFU  (Q8U2H1), REG4_PYRHO  (O58741), 
REG5_PYRHO  (O58782), REG6_PYRAB  (Q9V0Y9), REG6_PYRFU  (Q8U0P3), 
REG6_PYRHO  (O59188), REG8_PYRAB  (Q9V1E5), REG8_PYRFU  (Q8U067), 
REG8_PYRHO  (O59309), REG9_PYRAB  (Q9UY16), REG9_PYRFU  (Q8U445), 
REG9_PYRHO  (O59579), Y4SM_SINFN  (P50337), YUGG_BACSU  (O05236), 
YWRC_BACSU  (O05217)
» more

UniProtKB/Swiss-Prot
False positive sequences
5 sequences

ACAC_DICDI  (Q54J08), KTU_XENTR   (Q0P4V4), LEXA_OLEA2  (Q314F2), 
NIRDL_PARPN (I6UH61), NIRG_STUST  (Q52524)
» more

PDB
[Detailed view]
5 PDB

1I1G; 2CG4; 2DBB; 2GQQ; 2L4A