PROSITE entry PS00519
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General information about the entry
| Entry name [info] | HTH_ASNC_1 |
| Accession [info] | PS00519 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-DEC-2001 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00520 |
Name and characterization of the entry
| Description [info] | AsnC-type HTH domain signature. |
| Pattern [info] |
[GSTAP]-x(2)-[DNEQA]-[LIVM]-[GSA]-x(2)-[LIVMFYT]-[GAN]-[LIVMST]-[ST]- x(6)-R-[LIVT]-x(2)-[LIVM]-x(3)-G. |
Numerical results [info]
| Total number of hits | 44 in 44 different sequences |
| Number of true positive hits | 39 in 39 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 28 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 88.64 % |
| Recall (true positives / (true positives + false negatives)) | 58.21 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
39 sequences
ASNC_ECO57 (P0ACI8 ), ASNC_ECOL6 (P0ACI7 ), ASNC_ECOLI (P0ACI6 ), ASNC_HAEIN (P44337 ), ASNC_SHIFL (P0ACI9 ), AZLB_BACSU (O07920 ), BKDR_PSEPU (P42179 ), DECR_ECO57 (P0ACJ7 ), DECR_ECOL6 (P0ACJ6 ), DECR_ECOLI (P0ACJ5 ), GRP_ZYMMA (F8DT92 ), GRP_ZYMMO (P0DJA5 ), LRP_ECO57 (P0ACJ2 ), LRP_ECOL6 (P0ACJ1 ), LRP_ECOLI (P0ACJ0 ), LRP_HAEIN (P45265 ), LRP_KLEAE (P0ACJ4 ), LRP_KLEPN (P37424 ), LRP_RHIME (P56901 ), LRP_SALTY (P0A2S0 ), LRP_SERMA (P37425 ), LRP_SHIFL (P0ACJ3 ), PTR1_METJA (Q57615 ), PTR2_METJA (Q58133 ), PUTR_RHIRD (Q44333 ), PUTR_RHOCA (Q52710 ), REG1_PYRAB (Q9V2M0 ), REG1_PYRFU (Q8U4M7 ), REG1_PYRHO (O57818 ), REG2_PYRAB (Q9V2K6 ), REG2_PYRHO (O57802 ), REG7_PYRAB (Q9V159 ), REG7_PYRFU (P42180 ), REG7_PYRHO (O59256 ), Y224_HAEIN (P44580 ), Y4TD_SINFN (P55658 ), YEZC_BACSU (O31497 ), ZRP_ZYMMA (F8DT24 ), ZRP_ZYMMO (P0DJA6 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
28 sequences
BKDR_PSEAE (Q9I1M3 ), DOEX_HALED (E1V7V9 ), LRPA_BACSU (P96652 ), LRPB_BACSU (P96653 ), LRPC_BACSU (P96582 ), LRS14_SACS2 (O93774 ), LYSM_SACS2 (Q980W9 ), LYSM_SULTO (Q976J7 ), REG2_PYRFU (Q8TZE2 ), REG3_PYRAB (Q9V2D7 ), REG3_PYRFU (Q8U1H7 ), REG3_PYRHO (O57880 ), REG4_PYRAB (Q9V029 ), REG4_PYRFU (Q8U2H1 ), REG4_PYRHO (O58741 ), REG5_PYRHO (O58782 ), REG6_PYRAB (Q9V0Y9 ), REG6_PYRFU (Q8U0P3 ), REG6_PYRHO (O59188 ), REG8_PYRAB (Q9V1E5 ), REG8_PYRFU (Q8U067 ), REG8_PYRHO (O59309 ), REG9_PYRAB (Q9UY16 ), REG9_PYRFU (Q8U445 ), REG9_PYRHO (O59579 ), Y4SM_SINFN (P50337 ), YUGG_BACSU (O05236 ), YWRC_BACSU (O05217 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
ACAC_DICDI (Q54J08 ), KTU_XENTR (Q0P4V4 ), LEXA_OLEA2 (Q314F2 ), NIRDL_PARPN (I6UH61 ), NIRG_STUST (Q52524 )» more |
| PDB [Detailed view] |
5 PDB
1I1G; 2CG4; 2DBB; 2GQQ; 2L4A |