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PROSITE entry PS00543


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General information about the entry

Entry name [info] HLYD_FAMILY
Accession [info] PS00543
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00469

Name and characterization of the entry

Description [info] HlyD family secretion proteins signature.
Pattern [info] 
[LIVM]-x(2)-G-[LM]-x(3)-[STGAV]-x-[LIVMT]-x-[LIVMTK]-[GE]-x-[KR]-x-
[LIVMFYW](2)-x-[LIVMFYW](2)-[LIVMFYWK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.91 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 17 sequences 

APRE_PSEAE  (Q03025), CVAA_ECOLX  (P22519), CYAD_BORP1  (J7QCA7), 

CYAD_BORPE  (P0DKX9), HLYDC_ECOLX (P09986), HLYDP_ECOLX (P06739), 
HLYD_MANHA  (P16534), HLYD_PASSP  (P55125), LCNDL_LACLA (Q9CJB7), 
LCND_LACLC  (P0A3G6), LCND_LACLL  (P0A3G5), LTXD_AGGAC  (P18790), 
MCHE_ECOLX  (Q9EXN6), MESE_LEUME  (Q10419), PRTE_DICCH  (P23597), 
RTX1D_ACTPL (P26761), RTX3D_ACTPL (Q08633)
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

EMRA_ACIBT  (P0DPR6), EMRA_ECOLI  (P27303), EMRA_HAEIN  (P44928), 

EMRK_ECOLI  (P52599), FARA_NEIGO  (Q9RQ30), PRSE_RHIME  (Q7ANN5)
» more