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Entry: PS00552

General information about the entry

Entry name [info] HTH_MERR_1
Accession [info] PS00552
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-NOV-1995 DATA UPDATE;
05-DEC-2018 INFO UPDATE.
PROSITE Doc. [info] PDOC00477

Name and characterization of the entry

Description [info] MerR-type HTH domain signature.
Pattern [info] 
[GSA]-x-[LIVMFA]-[ASM]-x(2)-[STACLIV]-[GSDENQR]-[LIVC]-[STANHK]-x(3)-
[LIVM]-[RHF]-x-[YW]-[DEQ]-x(2,3)-[GHDNQ]-[LIVMF](2).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2018_11 which contains 558'898 sequence entries.


Total number of hits 48 in 48 different sequences
Number of true positive hits 48 in 48 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 31
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 60.76 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 48 sequences 

BLTR_BACSU  (P39842    ), BLUR_ECOLI  (P75989    ), BMRR_BACSU  (P39075    ), 

CUER_ECO57  (Q8XD09    ), CUER_ECOL6  (Q8FK74    ), CUER_ECOLI  (P0A9G4    ), 
CUER_SALTI  (Q8Z8S3    ), CUER_SALTY  (Q93CH6    ), CUER_SHIFL  (P0A9G5    ), 
CUER_VIBC3  (A5F2W6    ), CUER_VIBCH  (P0C6D2    ), GLNR_BACAN  (P62172    ), 
GLNR_BACCE  (P62173    ), GLNR_BACCR  (P62174    ), GLNR_BACSU  (P37582    ), 
HMRR2_RHIME (P58379    ), HMRR_SINMW  (Q9X5X4    ), HSPR_STRCO  (P40183    ), 
MERR_ACIFR  (P22896    ), MERR_BACCE  (P22853    ), MERR_PSEAI  (P0A183    ), 
MERR_PSEFL  (P0A184    ), MERR_PSESP  (P69413    ), MERR_SALTI  (P0A2Q8    ), 
MERR_SERMA  (P13111    ), MERR_SHIFL  (P0A2Q9    ), MERR_STAAU  (P22874    ), 
MLRA_ECOLI  (P33358    ), MLRA_SALTS  (E1WH94    ), MLRA_SALTY  (P0CL12    ), 
NOLA_BRADU  (P22537    ), NOLA_BRAEL  (P50329    ), NOLA_BRASN  (P50330    ), 
SOXR_CHRVO  (Q9ZHI4    ), SOXR_ECO57  (P0ACS3    ), SOXR_ECOLI  (P0ACS2    ), 
SOXR_PSEAE  (Q51506    ), SOXR_SALTI  (P0A2R1    ), SOXR_SALTY  (P0A2R0    ), 
SOXR_SHIFL  (P0ACS4    ), TIPA_STRCO  (P0A4T8    ), TIPA_STRLI  (P0A4T9    ), 
Y186_HAEIN  (P44558    ), Y293_HAEIN  (P44617    ), YYAN_BACSU  (P37510    ), 
ZNTR_ECO57  (P0ACS6    ), ZNTR_ECOLI  (P0ACS5    ), ZNTR_HAEIN  (P45277    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 31 sequences 

ADHR_BACSU  (O06008    ), CARA_MYXXA  (Q50899    ), CARH_MYXXA  (Q50900    ), 

CARH_THET8  (Q53W62    ), CUER_BACSU  (O07586    ), CUER_YERPE  (Q8ZCA8    ), 
HMMR_RHILV  (Q9X5V4    ), HMRR1_RHIME (P58378    ), MERD_ACICA  (Q52110    ), 
MERD_ENTAG  (P0A2Q7    ), MERD_PSEAI  (P06689    ), MERD_PSEFL  (Q51773    ), 
MERD_SALTI  (P0A2Q6    ), MERD_SERMA  (P08654    ), MERD_SHIFL  (P20102    ), 
MTA_BACSU   (P71039    ), SKGA_CAUVC  (P0CAV4    ), SKGA_CAUVN  (B8H172    ), 
TNRA_BACSU  (Q45666    ), Y1828_MYCTO (P9WME6    ), Y1828_MYCTU (P9WME7    ), 
Y1830_MYCTO (P9WME4    ), Y1830_MYCTU (P9WME5    ), Y1859_MYCBO (P67670    ), 
Y1861_MYCBO (P67672    ), Y4778_PSEAE (Q9HV30    ), Y603_AQUAE  (O66861    ), 
Y701_SYNY3  (Q55963    ), YDFL_BACSU  (P96690    ), YFMP_BACSU  (O06474    ), 
YHI4_RHOCA  (P30791    )
» more

PDB
[Detailed view]		 27 PDB

1EXI; 1EXJ; 1Q05; 1Q06; 1Q07; 1R8E; 2VZ4; 2ZHG; 2ZHH; 3D6Y; 3D6Z; 3D70; 3D71; 3IAO; 3Q1M; 3Q2Y; 3Q3D; 3Q5P; 3Q5R; 3Q5S; 4R4E; 4WLS; 4WLW; 5CRL; 5D8C; 5D90; 5E01
» more

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