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Entry: PS00552 |
Entry name [info] | HTH_MERR_1 |
Accession [info] | PS00552 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1991 CREATED;
01-NOV-1995 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00477 |
Description [info] | MerR-type HTH domain signature. |
Pattern [info] |
[GSA]-x-[LIVMFA]-[ASM]-x(2)-[STACLIV]-[GSDENQR]-[LIVC]-[STANHK]-x(3)- [LIVM]-[RHF]-x-[YW]-[DEQ]-x(2,3)-[GHDNQ]-[LIVMF](2). |
Total number of hits | 48 in 48 different sequences |
Number of true positive hits | 48 in 48 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 31 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 60.76 % |
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
48 sequences
BLTR_BACSU (P39842 ), BLUR_ECOLI (P75989 ), BMRR_BACSU (P39075 ), CUER_ECO57 (Q8XD09 ), CUER_ECOL6 (Q8FK74 ), CUER_ECOLI (P0A9G4 ), CUER_SALTI (Q8Z8S3 ), CUER_SALTY (Q93CH6 ), CUER_SHIFL (P0A9G5 ), CUER_VIBC3 (A5F2W6 ), CUER_VIBCH (P0C6D2 ), GLNR_BACAN (P62172 ), GLNR_BACCE (P62173 ), GLNR_BACCR (P62174 ), GLNR_BACSU (P37582 ), HMRR2_RHIME (P58379 ), HMRR_SINMW (Q9X5X4 ), HSPR_STRCO (P40183 ), MERR_ACIFR (P22896 ), MERR_BACCE (P22853 ), MERR_PSEAI (P0A183 ), MERR_PSEFL (P0A184 ), MERR_PSESP (P69413 ), MERR_SALTI (P0A2Q8 ), MERR_SERMA (P13111 ), MERR_SHIFL (P0A2Q9 ), MERR_STAAU (P22874 ), MLRA_ECOLI (P33358 ), MLRA_SALTS (E1WH94 ), MLRA_SALTY (P0CL12 ), NOLA_BRADU (P22537 ), NOLA_BRAEL (P50329 ), NOLA_BRASN (P50330 ), SOXR_CHRVO (Q9ZHI4 ), SOXR_ECO57 (P0ACS3 ), SOXR_ECOLI (P0ACS2 ), SOXR_PSEAE (Q51506 ), SOXR_SALTI (P0A2R1 ), SOXR_SALTY (P0A2R0 ), SOXR_SHIFL (P0ACS4 ), TIPA_STRCO (P0A4T8 ), TIPA_STRLI (P0A4T9 ), Y186_HAEIN (P44558 ), Y293_HAEIN (P44617 ), YYAN_BACSU (P37510 ), ZNTR_ECO57 (P0ACS6 ), ZNTR_ECOLI (P0ACS5 ), ZNTR_HAEIN (P45277 )» more
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UniProtKB/Swiss-Prot False negative sequences |
31 sequences
ADHR_BACSU (O06008 ), CARA_MYXXA (Q50899 ), CARH_MYXXA (Q50900 ), CARH_THET8 (Q53W62 ), CUER_BACSU (O07586 ), CUER_YERPE (Q8ZCA8 ), HMMR_RHILV (Q9X5V4 ), HMRR1_RHIME (P58378 ), MERD_ACICA (Q52110 ), MERD_ENTAG (P0A2Q7 ), MERD_PSEAI (P06689 ), MERD_PSEFL (Q51773 ), MERD_SALTI (P0A2Q6 ), MERD_SERMA (P08654 ), MERD_SHIFL (P20102 ), MTA_BACSU (P71039 ), SKGA_CAUVC (P0CAV4 ), SKGA_CAUVN (B8H172 ), TNRA_BACSU (Q45666 ), Y1828_MYCTO (P9WME6 ), Y1828_MYCTU (P9WME7 ), Y1830_MYCTO (P9WME4 ), Y1830_MYCTU (P9WME5 ), Y1859_MYCBO (P67670 ), Y1861_MYCBO (P67672 ), Y4778_PSEAE (Q9HV30 ), Y603_AQUAE (O66861 ), Y701_SYNY3 (Q55963 ), YDFL_BACSU (P96690 ), YFMP_BACSU (O06474 ), YHI4_RHOCA (P30791 )» more |
PDB [Detailed view] |
29 PDB
1EXI; 1EXJ; 1Q05; 1Q06; 1Q07; 1R8E; 2VZ4; 2ZHG; 2ZHH; 3D6Y; 3D6Z; 3D70; 3D71; 3IAO; 3Q1M; 3Q2Y; 3Q3D; 3Q5P; 3Q5R; 3Q5S; 4R4E; 4WLS; 4WLW; 5CRL; 5D8C; 5D90; 5E01; 6LDI; 7C17 » more |