PROSITE entry PS00552

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General information about the entry

Entry name [info]	HTH_MERR_1
Accession [info]	PS00552
Entry type [info]	PATTERN
Date [info]	01-DEC-1991 CREATED; 01-NOV-1995 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00477

Name and characterization of the entry

Description [info]	MerR-type HTH domain signature.
Pattern [info]	[GSA]-x-[LIVMFA]-[ASM]-x(2)-[STACLIV]-[GSDENQR]-[LIVC]-[STANHK]-x(3)- [LIVM]-[RHF]-x-[YW]-[DEQ]-x(2,3)-[GHDNQ]-[LIVMF](2).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	48 in 48 different sequences
Number of true positive hits	48 in 48 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	31
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	60.76 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

48 sequences

BLTR_BACSU  (P39842), BLUR_ECOLI  (P75989), BMRR_BACSU  (P39075),

CUER_ECO57  (Q8XD09), CUER_ECOL6  (Q8FK74), CUER_ECOLI  (P0A9G4), 
CUER_SALTI  (Q8Z8S3), CUER_SALTY  (Q93CH6), CUER_SHIFL  (P0A9G5), 
CUER_VIBC3  (A5F2W6), CUER_VIBCH  (P0C6D2), GLNR_BACAN  (P62172), 
GLNR_BACCE  (P62173), GLNR_BACCR  (P62174), GLNR_BACSU  (P37582), 
HMRR2_RHIME (P58379), HMRR_SINMW  (Q9X5X4), HSPR_STRCO  (P40183), 
MERR_ACIFR  (P22896), MERR_BACCE  (P22853), MERR_PSEAI  (P0A183), 
MERR_PSEFL  (P0A184), MERR_PSESP  (P69413), MERR_SALTI  (P0A2Q8), 
MERR_SERMA  (P13111), MERR_SHIFL  (P0A2Q9), MERR_STAAU  (P22874), 
MLRA_ECOLI  (P33358), MLRA_SALTS  (E1WH94), MLRA_SALTY  (P0CL12), 
NOLA_BRADU  (P22537), NOLA_BRAEL  (P50329), NOLA_BRASN  (P50330), 
SOXR_CHRVO  (Q9ZHI4), SOXR_ECO57  (P0ACS3), SOXR_ECOLI  (P0ACS2), 
SOXR_PSEAE  (Q51506), SOXR_SALTI  (P0A2R1), SOXR_SALTY  (P0A2R0), 
SOXR_SHIFL  (P0ACS4), TIPA_STRCO  (P0A4T8), TIPA_STRLI  (P0A4T9), 
Y186_HAEIN  (P44558), Y293_HAEIN  (P44617), YYAN_BACSU  (P37510), 
ZNTR_ECO57  (P0ACS6), ZNTR_ECOLI  (P0ACS5), ZNTR_HAEIN  (P45277)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

31 sequences

ADHR_BACSU  (O06008), CARA_MYXXA  (Q50899), CARH_MYXXA  (Q50900),

CARH_THET8  (Q53W62), CUER_BACSU  (O07586), CUER_YERPE  (Q8ZCA8), 
HMMR_RHILV  (Q9X5V4), HMRR1_RHIME (P58378), MERD_ACICA  (Q52110), 
MERD_ENTAG  (P0A2Q7), MERD_PSEAI  (P06689), MERD_PSEFL  (Q51773), 
MERD_SALTI  (P0A2Q6), MERD_SERMA  (P08654), MERD_SHIFL  (P20102), 
MTA_BACSU   (P71039), SKGA_CAUVC  (P0CAV4), SKGA_CAUVN  (B8H172), 
TNRA_BACSU  (Q45666), Y1828_MYCTO (P9WME6), Y1828_MYCTU (P9WME7), 
Y1830_MYCTO (P9WME4), Y1830_MYCTU (P9WME5), Y1859_MYCBO (P67670), 
Y1861_MYCBO (P67672), Y4778_PSEAE (Q9HV30), Y603_AQUAE  (O66861), 
Y701_SYNY3  (Q55963), YDFL_BACSU  (P96690), YFMP_BACSU  (O06474), 
YHI4_RHOCA  (P30791)

» more

PDB
[Detailed view]

32 PDB

1EXI; 1EXJ; 1Q05; 1Q06; 1Q07; 1R8E; 2VZ4; 2ZHG; 2ZHH; 3D6Y; 3D6Z; 3D70; 3D71; 3IAO; 3Q1M; 3Q2Y; 3Q3D; 3Q5P; 3Q5R; 3Q5S; 4R4E; 4WLS; 4WLW; 5CRL; 5D8C; 5D90; 5E01; 6LDI; 6XH7; 6XH8; 7C17; 7CKQ
» more