PROSITE entry PS00555
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General information about the entry
| Entry name [info] | ICOSAH_VIR_COAT_S |
| Accession [info] | PS00555 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00480 |
Name and characterization of the entry
| Description [info] | Plant viruses icosahedral capsid proteins 'S' region signature. |
| Pattern [info] |
[FYW]-x-[PSTA]-x(7)-G-x-[LIVM]-x-[LIVM]-x-[FYWI]-x(2)-D-x(5)-P. |
Numerical results [info]
| Total number of hits | 18 in 18 different sequences |
| Number of true positive hits | 17 in 17 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 1 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 94.44 % |
| Recall (true positives / (true positives + false negatives)) | 94.44 % |
Comments [info]
| Taxonomic range [info] | Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
17 sequences
CAPSD_AMCV (P14836), CAPSD_CARMS (Q9Q6X7), CAPSD_CARMV (P04383), CAPSD_CFMVN (Q66012), CAPSD_CNV (P15183), CAPSD_CRV (P17456), CAPSD_MCMVK (P11642), CAPSD_MNSV (P19899), CAPSD_POLVP (Q9QBU3), CAPSD_RCNMV (P22955), CAPSD_SBMVA (O72158), CAPSD_SCPMV (P03607), CAPSD_TBSVB (P11795), CAPSD_TBSVC (P11689), CAPSD_TCV (P06663), CAPSD_TNVA (P22959), CAPSD_TNVD (P27210)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
1 sequence
CAPSD_PNLV (Q5NDM8) |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
TCTP2_DICDI (Q54RX1) |
| PDB [Detailed view] |
9 PDB
1OPO; 2TBV; 2ZAH; 3ZX8; 3ZX9; 3ZXA; 4LLF; 4SBV; 6MRM |