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PROSITE entry PS00562

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PURL: https://purl.expasy.org/prosite/signature/PS00562

Direct ScanProsite submission

General information about the entry

Entry name [info]	CBM1_1
Accession [info]	PS00562
Entry type [info]	PATTERN
Date [info]	01-DEC-1991 CREATED; 01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00486

Name and characterization of the entry

Description [info]	CBM1 (carbohydrate binding type-1) domain signature.
Pattern [info]	C-G-G-x(4,7)-G-x(3)-C-x(4,5)-C-x(3,5)-[NHGS]-x-[FYWMI]-x(2)-Q-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_04 which contains 573'661 sequence entries.

Total number of hits	125 in 121 different sequences
Number of true positive hits	125 in 121 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	1
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	99.21 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	4
Site [info]	disulfide at position 1
Site [info]	disulfide at position 7
Site [info]	disulfide at position 9
Site [info]	disulfide at position 16
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

121 sequences

AA12_COPC7  (A8P0V4), AA12_COPCI  (A0A0A8IDB7), AB62A_PENPR (A0A977JPB5),

AXE1_ASPFU  (Q4WBW4), AXE1_COPC7  (A8PB24), AXE1_HYPJE  (Q99034), 
AXE1_NEOFI  (A1DBP9), AXE1_TALPU  (Q8NJP6), CBHB_ASPAC  (O59843), 
CBHB_ASPCL  (A1CU44), CBHB_ASPFC  (B0Y8K2), CBHB_ASPFU  (Q4WM08), 
CBHB_ASPNC  (A2QAI7), CBHB_ASPNG  (Q9UVS8), CBHB_ASPTN  (Q0CMT2), 
CBHB_EMENI  (Q8NK02), CBHB_NEOFI  (A1DNL0), CBHC_ASPCL  (A1CCN4), 
CBHC_ASPFC  (B0XWL3), CBHC_ASPFU  (Q4WFK4), CBHC_ASPNC  (A2QYR9), 
CBHC_ASPTN  (Q0CFP1), CBHC_EMENI  (Q5B2E8), CBHC_NEOFI  (A1DJQ7), 
CE12C_PYRO7 (G4NBX2), CEL6A_PODAN (B2ABX7), CEL6A_PYRO7 (G4MM92), 
CEL7A_THET4 (G2QCS4), CUTI1_VERDA (A0A2J8C362), EG5A_PHACH  (Q66NB7), 
EIX1_BOTFB  (A0A384JXV5), EIX3_VERDV  (G2X8M4), EIX3_VERLO  (A0A0G4KL96), 
FAEB_TALFU  (Q9HE18), FAEB_TALSN  (B8M9H9), GCE1_PHACR  (P0CT87), 
GCE1_PODAN  (B2ABS0), GCE1_SODAL  (A0A1D8EJG8), GCE_CERUI   (A0A0A7EQR3), 
GCE_HYPJQ   (G0RV93), GH6D_PODAN  (B2ADA5), GUN1_HYPJE  (P07981), 
GUN1_HYPJR  (A0A024SNB7), GUN1_TRILO  (Q12714), GUN2_HYPJE  (P07982), 
GUN2_HYPJR  (A0A024SH20), GUN3_HUMIN  (Q12624), GUN3_NEUCR  (Q7SDR1), 
GUN5_HYPJE  (P43317), GUNB_FUSOX  (P46236), GUNF_FUSOX  (P46239), 
GUNK_FUSOX  (P45699), GUX1A_NEUCR (Q7SA23), GUX1B_NEUCR (P38676), 
GUX1_HUMIN  (P15828), GUX1_HYPJE  (P62694), GUX1_HYPJR  (A0A024RXP8), 
GUX1_HYPRU  (P19355), GUX1_PENJA  (Q06886), GUX1_PHACH  (P13860), 
GUX1_TRIHA  (Q9P8P3), GUX1_TRIKO  (P62695), GUX2_AGABI  (Q92400), 
GUX2_HYPJE  (P07987), GUX2_HYPJR  (A0A024SH76), GUX3_AGABI  (P49075), 
GUX6_HUMIN  (Q9C1S9), GUXC_FUSOX  (P46238), LP9A_ASPCL  (A1C4H2), 
LP9A_ASPFC  (B0Y9G4), LP9A_ASPFN  (B8MXJ7), LP9A_ASPKW  (Q96WQ9), 
LP9A_ASPNC  (A2R5N0), LP9A_ASPOR  (Q2US83), LP9A_ASPTM  (A0A5N6V703), 
LP9A_ASPTN  (Q0CEU4), LP9A_BOTFB  (A0A384K4U6), LP9A_HYPJE  (O14405), 
LP9A_HYPJQ  (G0R6T8), LP9A_NEOFI  (A1DBS6), LP9A_NEUCR  (Q7S439), 
LP9A_PODAN  (B2B629), LP9B_EMENI  (Q5BCX8), LP9B_PODAN  (B2AVF1), 
LP9C_ASPFU  (Q4WBU0), LP9C_BOTFB  (A0A384JJB6), LP9C_NEUCR  (Q7SHI8), 
LP9E_EMENI  (Q5AQA6), LP9E_PODAN  (B2ATL7), LP9G_ASPTM  (A0A5N6UV50), 
LP9G_THETT  (G2QZK6), LP9H_THET4  (G2Q9T3), LP9_AGABI   (Q00023), 
LP9_COPC7   (A8NCG7), MANA_HYPJR  (Q99036), MANF_ASPFC  (B0Y9E7), 
MANF_ASPFN  (B8NIV9), MANF_ASPFU  (Q4WBS1), MANF_ASPOR  (Q2U2I3), 
MANF_EMENI  (Q5AR04), MANF_NEOFI  (A1DBV1), PSBP_PORPU  (P50272), 
XG74_HYPJQ  (Q7Z9M8), XY11B_HUMIN (A0A0B5JC15), XYN1A_HUMIN (P79046), 
XYN1_PENPR  (A0A2U7QU15), XYN6_PYRGI  (Q8NJ73), XYN6_PYRO7  (G4MPQ7), 
XYNA_PHACH  (Q9HEZ1), XYNA_TALFU  (Q8WZJ4), XYNB_NEOPA  (Q02290), 
XYNB_PENOX  (E7EF85), XYNB_PHACH  (B7SIW1), XYNB_TALFU  (Q8J0K5), 
XYNC_HUMIN  (M4MEY9), XYNC_NEOPA  (Q9UV68), XYNC_PHACH  (B7SIW2), 
XYND_GIBZE  (I1S3C6), XYND_TALFU  (Q5ZNB1), XYS20_NEOPA (A8TGA1), 
YKK5_SCHPO  (Q9P7F1)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

1 sequence

MANF_ASPCL  (A1C8U0)

PDB
[Detailed view]

20 PDB

pdb_00001az6; pdb_00001azh; pdb_00001azk; pdb_00001cbh; pdb_00002cbh; pdb_00002mwj; pdb_00002mwk; pdb_00004bmf; pdb_00005x34; pdb_00005x35; pdb_00005x36; pdb_00005x37; pdb_00005x38; pdb_00005x39; pdb_00005x3c; pdb_00006rv8; pdb_00007yhf; pdb_00007yhg; pdb_00007yhh; pdb_00007yhi
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