PROSITE entry PS00570
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS00570
Direct ScanProsite submission
General information about the entry
| Entry name [info] | RING_HYDROXYL_ALPHA |
| Accession [info] | PS00570 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00493 |
Name and characterization of the entry
| Description [info] | Bacterial ring hydroxylating dioxygenases alpha-subunit signature. |
| Pattern [info] |
C-x-H-R-[GAR]-x(7,8)-[GEKVI]-[NERAQ]-x(4,5)-C-x-[FY]-H. |
Numerical results [info]
| Total number of hits | 49 in 49 different sequences |
| Number of true positive hits | 45 in 45 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 4 in 4 different sequences |
| Number of false negative sequences | 6 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 91.84 % |
| Recall (true positives / (true positives + false negatives)) | 88.24 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | iron_sulfur at position 1 |
| Site [info] | iron_sulfur at position 3 |
| Site [info] | iron_sulfur at position 10 |
| Site [info] | iron_sulfur at position 13 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
45 sequences
ABSAA_ALCSP (Q9RBG5), ANDAC_BURCE (Q84BZ3), ANTDA_ACIAD (O85673), BEDC1_PSEPU (Q07944), BENA_ACIAD (P07769), BNZA_PSEP1 (A5W4F2), BNZA_PSEPU (P0C618), BPHA1_PSES1 (Q52438), BPHA1_RHOJR (Q53122), BPHA_COMTE (Q46372), BPHA_METFU (Q52028), BPHA_PARXL (P37333), CBAA_COMTE (Q44256), CBDA_BURCE (Q51601), CMTAB_PSEPU (Q51974), CNTA_ACIB2 (D0C9N6), CNTA_ACIP2 (F0KFI5), CNTA_ECO57 (P0ABR8), CNTA_ECOLI (P0ABR7), DNTAC_BURSR (Q45695), HCAE_ECO57 (P0ABR6), HCAE_ECOHS (A8A344), HCAE_ECOLI (P0ABR5), HCAE_SHIBS (Q31XV2), HCAE_SHIF8 (Q0T1Y1), HCAE_SHIFL (Q83K39), HCAE_SHISS (Q3YZ15), LIGXA_SPHSK (G2IN04), MDPJ_AQUTE (G8FRC5), NAGG_RALSP (O52379), NDOB_PSEAI (Q51494), NDOB_PSEFL (O07824), NDOB_PSEPU (P0A110), NDOB_PSEU8 (P0A111), NDOB_RALSP (O52382), PDMA_SPHYB (S5RR11), PHT3_PSEPU (Q05183), POBA_ECTOL (Q52185), STC2_RHIME (Q92ZP9), TECA1_CUPXP (O24676), TPDA1_COMSP (Q3C1E3), TPDA2_COMSP (Q3C1D5), VANA_PSES9 (P12609), VANA_PSEUH (O05616), XYLX_PSEPU (P23099)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
6 sequences
GBMOO_CHRSD (Q1QYU7), GBMOO_PSEAB (A0A0H2ZIF3), GBMOO_PSEAE (Q9HTF4), HCAE_PHOLL (Q7N4W0), PUT2H_BORBR (A0A0H3LKV3), PUT2H_RALN1 (Q8XX92)» more |
| UniProtKB/Swiss-Prot False positive sequences |
4 sequences
CAO_ARATH (Q9MBA1), CAO_CHLRE (Q9ZWM5), CAO_DUNSA (Q9XJ38), CAO_ORYSJ (Q8S7E1)» more |
| PDB [Detailed view] |
54 PDB
pdb_00001eg9; pdb_00001ndo; pdb_00001o7g; pdb_00001o7h; pdb_00001o7m; pdb_00001o7n; pdb_00001o7p; pdb_00001o7w; pdb_00001uli; pdb_00001ulj; pdb_00001uuv; pdb_00001uuw; pdb_00002hmj; pdb_00002hmk; pdb_00002hml; pdb_00002hmm; pdb_00002hmn; pdb_00002hmo; pdb_00002xr8; pdb_00002xrx; pdb_00002xsh; pdb_00002xso; pdb_00002yfi; pdb_00002yfj; pdb_00002yfl; pdb_00003en1; pdb_00003eqq; pdb_00003gzx; pdb_00003gzy; pdb_00003vca; pdb_00003vcp; pdb_00004hjl; pdb_00004hkv; pdb_00004hm0; pdb_00004hm1; pdb_00004hm2; pdb_00004hm3; pdb_00004hm4; pdb_00004hm5; pdb_00004hm6; pdb_00004hm7; pdb_00004hm8; pdb_00004qup; pdb_00004quq; pdb_00004qur; pdb_00005aeu; pdb_00005aew; pdb_00005hl4; pdb_00006y9c; pdb_00007c8z; pdb_00007q04; pdb_00007q05; pdb_00007q06; pdb_00008k0a » more |