PROSITE entry PS00574

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General information about the entry

Entry name [info]	FATTY_ACID_DESATUR_2
Accession [info]	PS00574
Entry type [info]	PATTERN
Date [info]	01-DEC-1991 CREATED; 01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00399

Name and characterization of the entry

Description [info]	Fatty acid desaturases family 2 signature.
Pattern [info]	[ST]-[SA]-x(3)-[QR]-[LI]-x(5,6)-D-Y-x(2)-[LIVMFYW]-[LIVM]-[DE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	23 in 23 different sequences
Number of true positive hits	23 in 23 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	13
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	63.89 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

23 sequences

DESA_SYNY3  (P20388), DESA_SYNY4  (Q55230), STAD3_OPHAA (E3PZS0),

STAD3_OPHSP (E3PZR9), STAD5_ORYSI (A2XSL4), STAD5_ORYSJ (Q40731), 
STAD6_ARATH (Q84VY3), STAD7_ARATH (O22832), STADS_BRANA (Q01771), 
STAD_BRANA  (P29108), STAD_CARTI  (P22243), STAD_CORSA  (P32063), 
STAD_CUCSA  (P32061), STAD_ELAGV  (O24428), STAD_GOSHI  (Q42770), 
STAD_HELAN  (Q96456), STAD_LINUS  (P32062), STAD_OLEEU  (Q43593), 
STAD_RICCO  (P22337), STAD_SIMCH  (Q01753), STAD_SOLTU  (P46253), 
STAD_SOYBN  (Q42807), STAD_SPIOL  (P28645)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

13 sequences

DESA_ANAVA  (Q79F72), DESA_ARTPT  (Q54794), DESA_PICP2  (Q55231),

DESB_NOSS3  (Q704F0), DESB_SYNY3  (Q79EF1), DESC2_NOSS3 (Q704E9), 
DESC_ANAVA  (Q79F73), DESC_SYNY3  (Q55406), DESD_ARTPT  (Q54795), 
DESD_SYNY3  (Q08871), JAMB_MOOP1  (Q6E7K8), STAD_SOLCO  (Q41319), 
TTUB_TERTT  (C5BK13)

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PDB
[Detailed view]

9 PDB

1AFR; 1OQ4; 1OQ7; 1OQ9; 1OQB; 2J2F; 2XZ0; 2XZ1; 4V0J