PROSITE entry PS00576
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General information about the entry
Entry name [info] | GRAM_NEG_PORIN |
Accession [info] | PS00576 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1991 CREATED;
01-NOV-1995 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00498 |
Name and characterization of the entry
Description [info] | General diffusion Gram-negative porins signature. |
Pattern [info] |
[LIVMFY]-x(2)-G-x(2)-Y-x-F-x-K-x(2)-[SN]-[STAV]-[LIVMFYW]-V. |
Numerical results [info]
Total number of hits | 53 in 53 different sequences |
Number of true positive hits | 53 in 53 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 6 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 89.83 % |
Comments [info]
Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
53 sequences
NMPC_ECOLI (P21420 ), OMPA1_NEIMC (P13415 ), OMPA2_NEIMC (P18194 ), OMPA_NEIGO (P05430 ), OMPA_NEIMA (P57041 ), OMPA_NEIMB (P0DH58 ), OMPA_NEIMH (E6MXW0 ), OMPB1_NEIGO (P18195 ), OMPB1_NEIMB (P30690 ), OMPB2_NEIGO (P20148 ), OMPB2_NEIMI (P30687 ), OMPB3_NEIMI (P30688 ), OMPB4_NEIMI (P30689 ), OMPB_NEILA (P30691 ), OMPB_NEIMA (P57042 ), OMPB_NEIMH (E6MZM0 ), OMPB_NEISI (P30692 ), OMPC1_SHIFM (A0A4P7TKC8), OMPC2_SHIFM (A0A4P7TME1), OMPC_ECO57 (Q8XE41 ), OMPC_ECOL5 (P0DQH0 ), OMPC_ECOL6 (Q8CVW1 ), OMPC_ECOLI (P06996 ), OMPC_ENTCC (A0A0H3CMG2), OMPC_KLEPN (Q48473 ), OMPC_SALTI (P0A264 ), OMPC_SALTS (A0A0H3NJI9), OMPC_SALTY (P0A263 ), OMPC_SERMA (Q54471 ), OMPC_SHIFL (A0A2S4MYF8), OMPD_CITK8 (A8AGM8 ), OMPD_SALCH (Q57P83 ), OMPD_SALPA (Q5PHY0 ), OMPD_SALT1 (D0ZXQ1 ), OMPD_SALTS (A0A0H3NBQ0), OMPD_SALTY (P37592 ), OMPF_ECOL5 (P0DSD9 ), OMPF_ECOLI (P02931 ), OMPF_SALTI (Q56113 ), OMPF_SALTS (A0A0H3N9T8), OMPF_SALTY (P37432 ), OMPF_SERMA (O33980 ), OMPF_SHIFM (A0A4P7TN82), OMPF_XENNA (Q56828 ), OMPS1_SALTI (Q56110 ), PHOE_CITFR (Q01605 ), PHOE_ECOLI (P02932 ), PHOE_ENTCL (Q47490 ), PHOE_KLEOX (Q01606 ), PHOE_KLEPN (P30704 ), PHOE_SALTI (Q56119 ), PHOE_SALTY (P30705 ), PORI_BPPA2 (P07238 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
6 sequences
FHAC_BORPE (P35077 ), HLYB_PROMI (P16465 ), HXUB1_HAEIN (P44601 ), HXUB2_HAEIF (P45356 ), HXUB_HAEI8 (Q4QNS5 ), IBPB_HISS2 (B0UUL1 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
OMP_SODGL (P83079 ) |
PDB [Detailed view] |
56 PDB
1BT9; 1GFM; 1GFN; 1GFO; 1GFP; 1GFQ; 1HXT; 1HXU; 1HXX; 1MPF; 1OPF; 1OSM; 1PHO; 2J1N; 2J4U; 2OMF; 2XE1; 2ZFG; 2ZLD; 2ZLE; 3FYX; 3HW9; 3HWB; 3K19; 3K1B; 3NB3; 3NSG; 3O0E; 3POQ; 3POU; 3POX; 3UPG; 3UU2; 3WI4; 3WI5; 4A8D; 4D5U; 4GCP; 4GCQ; 4GCS; 4JFB; 4KR4; 4KR8; 4KRA; 4LSE; 4LSF; 4LSH; 4LSI; 5NUO; 5NUQ; 5NUR; 6WTZ; 6ZHP; 6ZHV; 7NST; 7NSU » more |