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PROSITE entry PS00576


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General information about the entry

Entry name [info] GRAM_NEG_PORIN
Accession [info] PS00576
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-NOV-1995 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00498

Name and characterization of the entry

Description [info] General diffusion Gram-negative porins signature.
Pattern [info] 
[LIVMFY]-x(2)-G-x(2)-Y-x-F-x-K-x(2)-[SN]-[STAV]-[LIVMFYW]-V.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 53 in 53 different sequences
Number of true positive hits 53 in 53 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.83 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 53 sequences 

NMPC_ECOLI  (P21420), OMPA1_NEIMC (P13415), OMPA2_NEIMC (P18194), 

OMPA_NEIGO  (P05430), OMPA_NEIMA  (P57041), OMPA_NEIMB  (P0DH58), 
OMPA_NEIMH  (E6MXW0), OMPB1_NEIGO (P18195), OMPB1_NEIMB (P30690), 
OMPB2_NEIGO (P20148), OMPB2_NEIMI (P30687), OMPB3_NEIMI (P30688), 
OMPB4_NEIMI (P30689), OMPB_NEILA  (P30691), OMPB_NEIMA  (P57042), 
OMPB_NEIMH  (E6MZM0), OMPB_NEISI  (P30692), OMPC1_SHIFM (A0A4P7TKC8), 
OMPC2_SHIFM (A0A4P7TME1), OMPC_ECO57  (Q8XE41), OMPC_ECOL5  (P0DQH0), 
OMPC_ECOL6  (Q8CVW1), OMPC_ECOLI  (P06996), OMPC_ENTCC  (A0A0H3CMG2), 
OMPC_KLEPN  (Q48473), OMPC_SALTI  (P0A264), OMPC_SALTS  (A0A0H3NJI9), 
OMPC_SALTY  (P0A263), OMPC_SERMA  (Q54471), OMPC_SHIFL  (A0A2S4MYF8), 
OMPD_CITK8  (A8AGM8), OMPD_SALCH  (Q57P83), OMPD_SALPA  (Q5PHY0), 
OMPD_SALT1  (D0ZXQ1), OMPD_SALTS  (A0A0H3NBQ0), OMPD_SALTY  (P37592), 
OMPF_ECOL5  (P0DSD9), OMPF_ECOLI  (P02931), OMPF_SALTI  (Q56113), 
OMPF_SALTS  (A0A0H3N9T8), OMPF_SALTY  (P37432), OMPF_SERMA  (O33980), 
OMPF_SHIFM  (A0A4P7TN82), OMPF_XENNA  (Q56828), OMPS1_SALTI (Q56110), 
PHOE_CITFR  (Q01605), PHOE_ECOLI  (P02932), PHOE_ENTCL  (Q47490), 
PHOE_KLEOX  (Q01606), PHOE_KLEPN  (P30704), PHOE_SALTI  (Q56119), 
PHOE_SALTY  (P30705), PORI_BPPA2  (P07238)
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

FHAC_BORPE  (P35077), HLYB_PROMI  (P16465), HXUB1_HAEIN (P44601), 

HXUB2_HAEIF (P45356), HXUB_HAEI8  (Q4QNS5), IBPB_HISS2  (B0UUL1)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

OMP_SODGL   (P83079)


				
	

	

		PDB
[Detailed view]		
		
			58 PDB
			


			1BT9; 1GFM; 1GFN; 1GFO; 1GFP; 1GFQ; 1HXT; 1HXU; 1HXX; 1MPF; 1OPF; 1OSM; 
			
				1PHO; 2J1N; 2J4U; 2OMF; 2XE1; 2ZFG; 2ZLD; 2ZLE; 3FYX; 3HW9; 3HWB; 3K19; 
				3K1B; 3NB3; 3NSG; 3O0E; 3POQ; 3POU; 3POX; 3UPG; 3UU2; 3WI4; 3WI5; 4A8D; 
				4D5U; 4GCP; 4GCQ; 4GCS; 4JFB; 4KR4; 4KR8; 4KRA; 4LSE; 4LSF; 4LSH; 4LSI; 
				5NUO; 5NUQ; 5NUR; 6WTZ; 6ZHP; 6ZHV; 7FDY; 7NST; 7NSU; 8C7L
			
			

			» more