PROSITE logo

PROSITE entry PS00576


View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] GRAM_NEG_PORIN
Accession [info] PS00576
Entry type [info] PATTERN
Date [info] 01-DEC-1991 CREATED;
01-NOV-1995 DATA UPDATE;
03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00498

Name and characterization of the entry

Description [info] General diffusion Gram-negative porins signature.
Pattern [info] 
[LIVMFY]-x(2)-G-x(2)-Y-x-F-x-K-x(2)-[SN]-[STAV]-[LIVMFYW]-V.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.


Total number of hits 53 in 53 different sequences
Number of true positive hits 53 in 53 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.83 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 53 sequences 

NMPC_ECOLI  (P21420    ), OMPA1_NEIMC (P13415    ), OMPA2_NEIMC (P18194    ), 

OMPA_NEIGO  (P05430    ), OMPA_NEIMA  (P57041    ), OMPA_NEIMB  (P0DH58    ), 
OMPA_NEIMH  (E6MXW0    ), OMPB1_NEIGO (P18195    ), OMPB1_NEIMB (P30690    ), 
OMPB2_NEIGO (P20148    ), OMPB2_NEIMI (P30687    ), OMPB3_NEIMI (P30688    ), 
OMPB4_NEIMI (P30689    ), OMPB_NEILA  (P30691    ), OMPB_NEIMA  (P57042    ), 
OMPB_NEIMH  (E6MZM0    ), OMPB_NEISI  (P30692    ), OMPC1_SHIFM (A0A4P7TKC8), 
OMPC2_SHIFM (A0A4P7TME1), OMPC_ECO57  (Q8XE41    ), OMPC_ECOL5  (P0DQH0    ), 
OMPC_ECOL6  (Q8CVW1    ), OMPC_ECOLI  (P06996    ), OMPC_ENTCC  (A0A0H3CMG2), 
OMPC_KLEPN  (Q48473    ), OMPC_SALTI  (P0A264    ), OMPC_SALTS  (A0A0H3NJI9), 
OMPC_SALTY  (P0A263    ), OMPC_SERMA  (Q54471    ), OMPC_SHIFL  (A0A2S4MYF8), 
OMPD_CITK8  (A8AGM8    ), OMPD_SALCH  (Q57P83    ), OMPD_SALPA  (Q5PHY0    ), 
OMPD_SALT1  (D0ZXQ1    ), OMPD_SALTS  (A0A0H3NBQ0), OMPD_SALTY  (P37592    ), 
OMPF_ECOL5  (P0DSD9    ), OMPF_ECOLI  (P02931    ), OMPF_SALTI  (Q56113    ), 
OMPF_SALTS  (A0A0H3N9T8), OMPF_SALTY  (P37432    ), OMPF_SERMA  (O33980    ), 
OMPF_SHIFM  (A0A4P7TN82), OMPF_XENNA  (Q56828    ), OMPS1_SALTI (Q56110    ), 
PHOE_CITFR  (Q01605    ), PHOE_ECOLI  (P02932    ), PHOE_ENTCL  (Q47490    ), 
PHOE_KLEOX  (Q01606    ), PHOE_KLEPN  (P30704    ), PHOE_SALTI  (Q56119    ), 
PHOE_SALTY  (P30705    ), PORI_BPPA2  (P07238    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

FHAC_BORPE  (P35077    ), HLYB_PROMI  (P16465    ), HXUB1_HAEIN (P44601    ), 

HXUB2_HAEIF (P45356    ), HXUB_HAEI8  (Q4QNS5    ), IBPB_HISS2  (B0UUL1    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

OMP_SODGL   (P83079    )


				
	

	

		PDB
[Detailed view]		
		
			56 PDB
			


			1BT9; 1GFM; 1GFN; 1GFO; 1GFP; 1GFQ; 1HXT; 1HXU; 1HXX; 1MPF; 1OPF; 1OSM; 
			
				1PHO; 2J1N; 2J4U; 2OMF; 2XE1; 2ZFG; 2ZLD; 2ZLE; 3FYX; 3HW9; 3HWB; 3K19; 
				3K1B; 3NB3; 3NSG; 3O0E; 3POQ; 3POU; 3POX; 3UPG; 3UU2; 3WI4; 3WI5; 4A8D; 
				4D5U; 4GCP; 4GCQ; 4GCS; 4JFB; 4KR4; 4KR8; 4KRA; 4LSE; 4LSF; 4LSH; 4LSI; 
				5NUO; 5NUQ; 5NUR; 6WTZ; 6ZHP; 6ZHV; 7NST; 7NSU
			
			

			» more