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| Entry: PS00598 |
General information about the entry
| Entry name [info] | CHROMO_1 |
| Accession [info] | PS00598 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1991 CREATED;
01-JUL-1999 DATA UPDATE; 17-JUN-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00517 |
Name and characterization of the entry
| Description [info] | Chromo domain signature. |
| Pattern [info] |
[FYL]-x-[LIVMC]-[KR]-W-x-[GDNR]-[FYWLME]-x(5,6)-[ST]-W-[ESV]-[PSTDEN]- x(2,3)-[LIVMC]. |
Numerical results [info]
| Total number of hits | 76 in 68 different sequences |
| Number of true positive hits | 76 in 68 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 50 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 60.32 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
68 sequences
CBX1_HUMAN (P83916 ), CBX1_MOUSE (P83917 ), CBX2_HUMAN (Q14781 ), CBX2_MOUSE (P30658 ), CBX3_HUMAN (Q13185 ), CBX3_MOUSE (P23198 ), CBX3_PONAB (Q5R6X7 ), CBX4_HUMAN (O00257 ), CBX4_MOUSE (O55187 ), CBX5_HUMAN (P45973 ), CBX5_MOUSE (Q61686 ), CBX6_HUMAN (O95503 ), CBX6_MOUSE (Q9DBY5 ), CBX7_HUMAN (O95931 ), CBX7_MOUSE (Q8VDS3 ), CBX7_RAT (P60889 ), CBX8_HUMAN (Q9HC52 ), CBX8_MOUSE (Q9QXV1 ), CDY1_HUMAN (Q9Y6F8 ), CDY2_HUMAN (Q9Y6F7 ), CDYL2_HUMAN (Q8N8U2 ), CDYL2_MOUSE (Q9D5D8 ), CDYL_HUMAN (Q9Y232 ), CDYL_MOUSE (Q9WTK2 ), CDYL_RAT (Q6AYK9 ), CEC1_CAEEL (P34618 ), CEC3_CAEEL (P45968 ), CHD1_BOMMO (A9X4T1 ), CHD1_CHICK (B6ZLK2 ), CHD1_DROME (Q7KU24 ), CHD1_HUMAN (O14646 ), CHD1_MOUSE (P40201 ), CHD1_YEAST (P32657 ), CHD2_HUMAN (O14647 ), CHD2_MOUSE (E9PZM4 ), CHD3_HUMAN (Q12873 ), CHD4_HUMAN (Q14839 ), CHD4_MOUSE (Q6PDQ2 ), CHP1_SCHPO (Q10103 ), CLR4_SCHPO (O60016 ), CMT1_ARATH (O49139 ), CMT1_ORYSJ (A0A0P0VUY4), CMT2_ORYSJ (Q5KQL9 ), CMT3_ARATH (Q94F88 ), HP1_DROME (P05205 ), HP1_DROVI (P29227 ), HRP3_SCHPO (O14139 ), LHP1_ARATH (Q946J8 ), LHP1_ORYSJ (Q339W7 ), LHP1_SOLLC (Q944N1 ), MPP8_HUMAN (Q99549 ), MPP8_MOUSE (Q3TYA6 ), MPP8_RAT (G3V8T1 ), PC_DROME (P26017 ), SUV39_DROME (P45975 ), SUV39_DROPS (Q294B9 ), SUV91_BOVIN (Q2NL30 ), SUV91_HUMAN (O43463 ), SUV91_MOUSE (O54864 ), SUV91_PONAB (Q5RB81 ), SUV92_BOVIN (Q32PH7 ), SUV92_CHICK (Q5F3W5 ), SUV92_HUMAN (Q9H5I1 ), SUV92_MACFA (Q4R3E0 ), SUV92_MOUSE (Q9EQQ0 ), SUV92_XENTR (Q28CQ7 ), SV91A_DANRE (Q6DGD3 ), SWI6_SCHPO (P40381 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
50 sequences
CEC4_CAEEL (Q19972 ), CHD3_CAEEL (Q22516 ), CHD3_DROME (O16102 ), CHD5_HUMAN (Q8TDI0 ), CHD6_HUMAN (Q8TD26 ), CHD7_CHICK (Q06A37 ), CHD7_HUMAN (Q9P2D1 ), CHD7_MOUSE (A2AJK6 ), CHD8_DANRE (B0R0I6 ), CHD8_HUMAN (Q9HCK8 ), CHD8_MOUSE (Q09XV5 ), CHD8_RAT (Q9JIX5 ), CHD8_XENTR (B5DE69 ), CHD9_HUMAN (Q3L8U1 ), CHD9_MOUSE (Q8BYH8 ), CHDM_DROME (O97159 ), CHP2_SCHPO (O42934 ), CHR4_ARATH (F4KBP5 ), CHR5_ARATH (F4IV99 ), CHR7_ARATH (F4JTF6 ), CMT1_MAIZE (Q9AXT8 ), CMT2_ARATH (Q94F87 ), CMT2_MAIZE (Q9ARI6 ), CMT3_MAIZE (Q8LPU5 ), CMT3_ORYSJ (C0SQ89 ), DCAF1_HUMAN (Q9Y4B6 ), DCAF1_MOUSE (Q80TR8 ), ELF1_SCHPO (O14134 ), ESA1_ASPOR (Q2UMQ5 ), ESA1_SCHPO (O94446 ), ESA1_YEAST (Q08649 ), HRP1_SCHPO (Q9US25 ), KAT8_HUMAN (Q9H7Z6 ), KAT8_MOUSE (Q9D1P2 ), KAT8_RAT (Q5XI06 ), LE418_CAEEL (G5EBZ4 ), MS3L1_HUMAN (Q8N5Y2 ), MS3L1_MOUSE (Q9WVG9 ), MS3L1_PONAB (Q5R6Y9 ), MS3L2_HUMAN (P0C860 ), MSL3_DROME (P50536 ), MSL3_DROVI (Q9NBL2 ), MYST1_ARATH (Q9FLF7 ), MYST1_ORYSJ (Q8LI34 ), MYST2_ARATH (Q9LXD7 ), NEW1_YEAST (Q08972 ), PKL_ARATH (Q9S775 ), SR43C_ARATH (O22265 ), SR43C_ORYSJ (Q8LSQ2 ), SUV91_XENLA (Q6NRE8 )» more |
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