PROSITE entry PS00601
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General information about the entry
Entry name [info] | IRF_1 |
Accession [info] | PS00601 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1991 CREATED;
01-JUL-1998 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00522 |
Name and characterization of the entry
Description [info] | IRF tryptophan pentad repeat DNA-binding domain signature. |
Pattern [info] |
W-x-[DNH]-x(5)-[LIVF]-x-[IV]-P-W-x-H-x(9,10)-[DE]-x(2)-[LIVF]-F-[KRQ]-x- [WR]-A. |
Numerical results [info]
Total number of hits | 29 in 29 different sequences |
Number of true positive hits | 29 in 29 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 5 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 85.29 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
29 sequences
IRF1_BOVIN (Q3SZP0 ), IRF1_CHICK (Q90876 ), IRF1_HUMAN (P10914 ), IRF1_MOUSE (P15314 ), IRF1_PIG (A0FIN4 ), IRF1_RAT (P23570 ), IRF2_CHICK (Q98925 ), IRF2_HUMAN (P14316 ), IRF2_MOUSE (P23906 ), IRF2_SIGHI (Q8R4E0 ), IRF3_CHICK (Q90643 ), IRF3_HUMAN (Q14653 ), IRF3_MOUSE (P70671 ), IRF3_PIG (Q764M6 ), IRF4_HUMAN (Q15306 ), IRF4_MOUSE (Q64287 ), IRF5_BOVIN (Q58DJ0 ), IRF5_HUMAN (Q13568 ), IRF5_MOUSE (P56477 ), IRF6_BOVIN (Q08DD6 ), IRF6_HUMAN (O14896 ), IRF6_MOUSE (P97431 ), IRF7_HUMAN (Q92985 ), IRF7_MOUSE (P70434 ), IRF8_CHICK (Q90871 ), IRF8_HUMAN (Q02556 ), IRF8_MOUSE (P23611 ), IRF9_HUMAN (Q00978 ), IRF9_MOUSE (Q61179 )» more
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UniProtKB/Swiss-Prot False negative sequences |
5 sequences
IRF3_BOVIN (Q4JF28 ), VIRF1_HHV8P (F5HF68 ), VIRF2_HHV8P (Q2HR71 ), VIRF3_HHV8P (F5HIC6 ), VIRF4_HHV8P (Q2HR73 )» more |
PDB [Detailed view] |
16 PDB
1IF1; 1IRF; 1IRG; 1T2K; 2DLL; 2IRF; 2O61; 2O6G; 2PI0; 3QU3; 3QU6; 6TD4; 7JM4; 7O56; 7OGS; 7OOT » more |