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| Entry: PS00622 |
General information about the entry
| Entry name [info] | HTH_LUXR_1 |
| Accession [info] | PS00622 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1992 CREATED;
01-APR-2006 DATA UPDATE; 12-AUG-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00542 |
Name and characterization of the entry
| Description [info] | LuxR-type HTH domain signature. |
| Pattern [info] |
[GDC]-x(2)-[NSTAVY]-x(2)-[IV]-[GSTA]-x(2)-[LIVMFYWCT]-x-[LIVMFYWCR]-x(3)-
[NST]-[LIVM]-x(2)-{T}-x(2)-[NRHSA]-[LIVMSTA]-x(2)-[KR].
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Numerical results [info]
| Total number of hits | 187 in 187 different sequences |
| Number of true positive hits | 172 in 172 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 15 in 15 different sequences |
| Number of false negative sequences | 77 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 91.98 % |
| Recall (true positives / (true positives + false negatives)) | 69.08 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
172 sequences
AGMR_PSEAE (P29369 ), AGMR_PSEPU (A8R3T0 ), ANOR_ACINO (A0A0N8YGA2), BVGA_BORBR (P0A4H3 ), BVGA_BORPA (P0A4H4 ), BVGA_BORPE (P0A4H2 ), CARR_PECCC (Q46751 ), CMPA_BACSU (P14204 ), CSGD_ECOLI (P52106 ), CSGD_SALTY (O54294 ), DCTR_RHOCA (P37740 ), DEGU_BACSU (P13800 ), DEGU_BREBE (P54662 ), DEVR_MYCTO (P9WMF8 ), DEVR_MYCTU (P9WMF9 ), ECHR_DICCH (Q46967 ), ECNR_CITFR (O69280 ), ESAR_PANSE (P54293 ), EVGA_ECO57 (P0ACZ6 ), EVGA_ECOL6 (P0ACZ5 ), EVGA_ECOLI (P0ACZ4 ), EVGA_SHIFL (P0ACZ7 ), EXPR_DICD3 (Q47188 ), EXPR_PECPM (Q47189 ), FIMZ_ECO57 (P0AEL9 ), FIMZ_ECOLI (P0AEL8 ), FIMZ_SALTY (P26319 ), FIXJ_AZOC5 (P26487 ), FIXJ_BRADU (P23221 ), FIXJ_RHIME (P10958 ), GACA_PSEAE (Q51373 ), GACA_PSEPH (P32967 ), GACA_PSEU2 (Q52376 ), GACA_PSEVI (P95582 ), GERE_BACSU (P11470 ), LASR_PSEAE (P25084 ), LIAR_BACSU (O32197 ), LNRK_BACSU (P94439 ), LUXR_ALIFS (P12746 ), LUXS_ALIF1 (P35327 ), MALT_CITK8 (A8AQX2 ), MALT_CROS8 (A7ME76 ), MALT_ECO24 (A7ZSU8 ), MALT_ECO27 (B7UKC3 ), MALT_ECO45 (B7MDP4 ), MALT_ECO55 (B7L4U8 ), MALT_ECO57 (Q8X701 ), MALT_ECO5E (B5YTW9 ), MALT_ECO7I (B7NMI3 ), MALT_ECO81 (B7N1J6 ), MALT_ECO8A (B7M2H9 ), MALT_ECOBW (C4ZVX0 ), MALT_ECODH (B1X764 ), MALT_ECOHS (A8A5M7 ), MALT_ECOK1 (A1AGU2 ), MALT_ECOL5 (Q0TC49 ), MALT_ECOL6 (Q8CXX5 ), MALT_ECOLC (B1IP47 ), MALT_ECOLI (P06993 ), MALT_ECOLU (B7NE23 ), MALT_ECOSE (B6I2Y2 ), MALT_ECOSM (B1LI79 ), MALT_ECOUT (Q1R5L6 ), MALT_ENT38 (A4WFK6 ), MALT_ESCF3 (B7LSC1 ), MALT_KLEP3 (B5XTR7 ), MALT_KLEP7 (A6TF41 ), MALT_PHOLL (Q7N976 ), MALT_SALA4 (B5F8N2 ), MALT_SALAR (A9MMA9 ), MALT_SALCH (Q57IV9 ), MALT_SALDC (B5FKD6 ), MALT_SALEP (B5R375 ), MALT_SALG2 (B5R7J9 ), MALT_SALHS (B4TKU2 ), MALT_SALNS (B4SVL9 ), MALT_SALPA (Q5PM00 ), MALT_SALPB (A9MTT7 ), MALT_SALPK (B5BHH3 ), MALT_SALSV (B4TY75 ), MALT_SALTI (Q8Z227 ), MALT_SALTY (Q8ZLI3 ), MALT_SERP5 (A8GKU0 ), MALT_SHIBS (Q31VL4 ), MALT_SHIF8 (Q0SZP7 ), MALT_SHISS (Q3YWK7 ), MALT_VIBCB (A7N5N6 ), MALT_VIBCH (Q9KNF3 ), MALT_VIBPA (Q87FQ5 ), MALT_VIBVU (Q8D4P3 ), MALT_VIBVY (Q7MG94 ), MALT_YERE8 (A1JSF2 ), MALT_YERP3 (A7FNW4 ), MALT_YERPA (Q1C2L4 ), MALT_YERPB (B2K5W2 ), MALT_YERPE (Q8ZJI2 ), MALT_YERPP (A4TGR4 ), MALT_YERPS (Q664J3 ), MALT_YERPY (B1JHZ0 ), MOAR_KLEAE (P54794 ), NARL_ECO57 (P0AF30 ), NARL_ECOL6 (P0AF29 ), NARL_ECOLI (P0AF28 ), NARL_SHIFL (P0AF31 ), NARP_ECOLI (P31802 ), NARP_HAEIN (P44845 ), NODW_BRADU (P15940 ), NREC_STAA1 (A7X623 ), NREC_STAA2 (A6U4C0 ), NREC_STAA3 (Q2FEA6 ), NREC_STAA8 (Q2FVM7 ), NREC_STAA9 (A5IVH2 ), NREC_STAAB (Q2YZ42 ), NREC_STAAC (Q5HDG5 ), NREC_STAAE (A6QJN1 ), NREC_STAAM (Q99RN8 ), NREC_STAAN (Q7A3U5 ), NREC_STAAR (Q6GE42 ), NREC_STAAS (Q6G6T0 ), NREC_STAAT (A8Z580 ), NREC_STAAW (Q7A029 ), NREC_STACT (Q7WZY4 ), NREC_STAEQ (Q5HLK6 ), NREC_STAES (Q8CN75 ), NREC_STAHJ (Q4L8Q6 ), PHZR_PSECL (P54303 ), PHZR_PSEFL (Q51786 ), RCSA_ECO57 (P69406 ), RCSA_ECOLI (P0DMC9 ), RCSA_ECOLX (P0DMD0 ), RCSA_ERWAM (P20098 ), RCSA_KLEAE (P05338 ), RCSA_PANSE (P27488 ), RCSA_SALTI (Q56083 ), RCSA_SALTY (P54698 ), RCSB_ECO57 (P69409 ), RCSB_ECOL6 (P69408 ), RCSB_ECOLI (P0DMC7 ), RCSB_ECOLX (P0DMC8 ), RCSB_SALTI (Q56127 ), RCSB_SALTY (P58663 ), RCSB_SHIFL (P69410 ), RHIR_RHILV (Q03316 ), RHLR_PSEAE (P54292 ), SDIA_ECOLI (P07026 ), SGAR_HYPME (P56644 ), SOLR_RALSL (O30919 ), SOLR_RALSO (P58590 ), TDIR_THAAR (O87940 ), TRPO_PSEAE (P24908 ), TTRR_SALTY (Q7CQM8 ), UHPA_ECO57 (P0AGA8 ), UHPA_ECOL6 (P0AGA7 ), UHPA_ECOLI (P0AGA6 ), UHPA_SALTY (P27667 ), UHPA_SHIFL (P0AGA9 ), UVRY_ECO57 (P66798 ), UVRY_ECOL6 (P66797 ), UVRY_ECOLI (P0AED5 ), UVRY_SHIFL (P0AED6 ), Y4QH_SINFN (P55629 ), Y890_MYCTO (P9WMG0 ), Y890_MYCTU (P9WMG1 ), Y914_MYCBO (P59969 ), YDFI_BACSU (P96686 ), YENR_YEREN (P54295 ), YEXN_AERSA (P45785 ), YGEK_ECO57 (P58664 ), YGEK_ECOLI (Q46791 ), YHCZ_BACSU (O07528 ), YHJB_ECOLI (P37640 ), YXJL_BACSU (P55184 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
77 sequences
AHYR_AERHY (P0A3J5 ), ALKS_ALCBS (Q0VKZ4 ), ALKS_PSEOL (P17051 ), ALKS_PSEPU (Q9L4M7 ), ASAR_AERSA (P0A3J6 ), BGLJ_ECOLI (P39404 ), BJAR1_BRADU (Q89VI3 ), BRPA_STRHY (Q01108 ), DCTR_ECO57 (Q8X5P3 ), DCTR_ECOL6 (Q8FCK2 ), DCTR_ECOLI (P37195 ), DCTR_SHIFL (Q83J60 ), DESR_BACSU (O34723 ), ECPR_ECO24 (A7ZI28 ), ECPR_ECO27 (B7UJE2 ), ECPR_ECO55 (B7L425 ), ECPR_ECO57 (Q8X6I1 ), ECPR_ECO5E (B5Z1N3 ), ECPR_ECO81 (B7MP71 ), ECPR_ECODH (B1XE36 ), ECPR_ECOHS (A7ZWT2 ), ECPR_ECOK1 (A1A7X7 ), ECPR_ECOKI (Q9AME2 ), ECPR_ECOL5 (Q0TKZ0 ), ECPR_ECOL6 (Q8FKL2 ), ECPR_ECOLC (B1J0X8 ), ECPR_ECOLI (P71301 ), ECPR_ECOLU (B7N8J2 ), ECPR_ECOSE (B6I082 ), ECPR_ECOSM (B1LHW0 ), ECPR_ECOUT (Q1RFQ3 ), ECPR_KLEP3 (B5Y159 ), ECPR_KLEP7 (A6T571 ), ECPR_SHIBS (Q325R5 ), EXAE_PSEPU (A8R3S7 ), GADE_ECO57 (P63206 ), GADE_ECOL6 (P63205 ), GADE_ECOLI (P63204 ), GADE_SHIFL (P63207 ), MCTR_RHIL3 (Q1M7A0 ), MOXX_PARDE (P29904 ), NARL_MYCTO (P9WGM4 ), NARL_MYCTU (P9WGM5 ), RAIR_RHIET (O54452 ), RPAR_RHOPA (Q6NCZ5 ), TMOT_PSEME (Q8KR08 ), TODT_PSEP1 (A5W4E2 ), TODT_PSEPT (I7CA98 ), TODT_PSEPU (Q3LWR6 ), TRAR_AGRFC (P54294 ), TRAR_AGRVI (P33909 ), TRAR_RHIRD (P33905 ), TRAR_SINFN (P55407 ), VANR_VIBAN (P74946 ), VJBR_BRUA2 (Q2YJ50 ), VJBR_BRUAB (Q579W9 ), VJBR_BRUME (Q8YAY5 ), VJBR_BRUO2 (A5VTN1 ), VJBR_BRUSU (Q8FXF9 ), VRAR_STAA1 (P0C0Z1 ), VRAR_STAAC (Q5HEP0 ), VRAR_STAAM (Q7A2Q1 ), VRAR_STAAN (Q7A4R9 ), VRAR_STAAR (Q6GFH3 ), VRAR_STAAS (Q6G850 ), VRAR_STAAW (Q7A0I0 ), VRAR_STAEQ (Q5HN50 ), VRAR_STAES (Q8CNP9 ), VRAR_STAHJ (Q4L7J5 ), VRAR_STAS1 (Q49YS9 ), YCF29_CYAPA (P48359 ), YCF29_GUITH (O78417 ), YCF29_PORPU (P51343 ), YCF29_PYRYE (Q1XDE4 ), YJJQ_ECOLI (P0ADD7 ), YUAB_ECOLI (Q9JMT8 ), YUKR_YERRU (O87971 )» more |
| UniProtKB/Swiss-Prot False positive sequences |
15 sequences
ANS1B_DANRE (A5PMU4 ), GLMU_STAA3 (Q2FJE2 ), GLMU_STAA8 (Q2G0S3 ), GLMU_STAAB (Q2YVU6 ), GLMU_STAAC (Q5HIH6 ), GLMU_STAAM (Q99WA4 ), GLMU_STAAN (Q7A7B4 ), GLMU_STAAR (Q6GJH2 ), GLMU_STAAS (Q6GBY9 ), GLMU_STAAW (Q8NXZ7 ), K1549_HUMAN (Q9HCM3 ), K1549_MOUSE (Q68FD9 ), RPSH_BACLI (P02964 ), RPSH_BACSU (P17869 ), Y170_LACJO (P60951 )» more |
| PDB [Detailed view] |
26 PDB
1A04; 1FSE; 1JE8; 1RNL; 1X3U; 1ZG1; 1ZG5; 1ZLJ; 1ZLK; 2KRF; 3C3W; 3C57; 3ULQ; 4LFU; 4LGW; 5F64; 5O8Y; 5O8Z; 5VXN; 5W43; 6EO2; 6EO3; 6MWH; 6MWL; 6MWW; 6MWZ » more |
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