PROSITE entry PS00623
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General information about the entry
| Entry name [info] | GMC_OXRED_1 |
| Accession [info] | PS00623 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1992 CREATED;
01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00543 |
Name and characterization of the entry
| Description [info] | GMC oxidoreductases signature 1. |
| Pattern [info] |
[GA]-[RKNC]-x-[LIVW]-G(2)-[GST](2)-x-[LIVM]-[NH]-x(3)-[FYWA]-x(2)-[PAG]- x(5)-[DNESHQA]. |
Numerical results [info]
| Total number of hits | 158 in 158 different sequences |
| Number of true positive hits | 158 in 158 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 42 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 79.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
158 sequences
ALKJ_PSEOL (Q00593), ALKJ_PSEPU (Q9WWW2), ALOX1_KOMPC (F2QY27), ALOX1_KOMPG (P04842), ALOX2_KOMPC (F2R038), ALOX2_KOMPG (C4R702), ALOX_CANBO (Q00922), ALOX_PICAN (P04841), ASC9_DIDFA (A0A5C1RDA6), BETA1_CHRSD (Q1QXE1), BETA2_CHRSD (Q9L4K0), BETA_ACIAD (Q6FDF9), BETA_ACIB3 (B7GYG5), BETA_ACIB5 (B7I895), BETA_ACIBC (B2HV79), BETA_ACIBS (B0VST3), BETA_ACIBY (B0V945), BETA_AGRFC (Q8UH55), BETA_AGRRK (B9JBA2), BETA_BRUA4 (A6X2G7), BETA_BRUC2 (A9M9H8), BETA_BRUME (Q8YFY2), BETA_BRUO2 (A5VPA6), BETA_BRUSI (B0CKN4), BETA_BRUSU (Q8G1Z8), BETA_BURA4 (B1Z034), BETA_BURCH (A0B2F7), BETA_BURCJ (B4EHJ2), BETA_BURCM (Q0B711), BETA_BURL3 (Q39A44), BETA_BURM1 (A9AMZ9), BETA_BURMA (Q62CH8), BETA_BURO0 (B1K707), BETA_BURO1 (Q1BQE2), BETA_BURP1 (Q3JLL7), BETA_BURPS (Q63KK7), BETA_BURTA (Q2T6D0), BETA_BURVG (A4JJG6), BETA_CITK8 (A8AJN0), BETA_CROS8 (A7MFA8), BETA_ECO24 (A7ZI50), BETA_ECO27 (B7UJG4), BETA_ECO45 (B7MCD0), BETA_ECO55 (B7L439), BETA_ECO57 (Q8X6C6), BETA_ECO5E (B5Z1R0), BETA_ECO8A (B7M2V5), BETA_ECODH (B1XE52), BETA_ECOHS (A7ZWV4), BETA_ECOL5 (Q0TKW1), BETA_ECOL6 (Q8FKI9), BETA_ECOLC (B1J0W6), BETA_ECOLI (P17444), BETA_ECOLU (B7N8L3), BETA_ECOSE (B6I074), BETA_ECOSM (B1LIJ7), BETA_ECOUT (Q1RFM3), BETA_KLEP3 (B5Y008), BETA_KLEP7 (A6T613), BETA_PARP8 (B2JS89), BETA_PARPJ (B2TCJ8), BETA_PARXL (Q13NG7), BETA_PECAS (Q6D6D9), BETA_PECCP (C6DKY4), BETA_PHOPR (Q6LGH5), BETA_PROMH (B4EX94), BETA_PSE14 (Q48CM7), BETA_PSEA7 (A6VEI3), BETA_PSEA8 (B7V5R3), BETA_PSEAB (Q02DZ0), BETA_PSEAE (Q9HTJ2), BETA_PSEE4 (Q1IG70), BETA_PSEF5 (Q4K4K7), BETA_PSEFS (C3K3D3), BETA_PSEMY (A4XPI5), BETA_PSEP1 (A5WA97), BETA_PSEPF (Q3K5H3), BETA_PSEPG (B0KN19), BETA_PSEPK (Q88CW6), BETA_PSESM (Q88AE7), BETA_PSEU2 (Q4ZM63), BETA_RHIE6 (B3PTE0), BETA_RHIEC (Q2KB43), BETA_RHIL3 (Q1MJU4), BETA_RHILO (Q985M5), BETA_RHILW (B5ZUG2), BETA_RHIME (P54223), BETA_SERP5 (A8GBX9), BETA_SHIF8 (Q0T7N0), BETA_SINFN (C3MIE4), BETA_SINMW (A6U6Y8), BETA_STAA1 (A7X6Z3), BETA_STAA2 (A6U4Z2), BETA_STAA3 (Q2FDP9), BETA_STAA8 (Q2FV11), BETA_STAA9 (A5IW37), BETA_STAAB (Q2YWJ5), BETA_STAAC (Q5HCU1), BETA_STAAE (A6QK99), BETA_STAAM (P60336), BETA_STAAN (P60337), BETA_STAAR (Q6GDJ1), BETA_STAAS (Q6G664), BETA_STAAT (A8Z5A4), BETA_STAAW (Q8NUM0), BETA_STAEQ (Q5HL11), BETA_STAES (Q8CMY2), BETA_STAHJ (Q4L9D7), BETA_STAS1 (Q4A0Q1), BETA_STAXY (Q9X2M2), BETA_STRM5 (B4SHV9), BETA_STRMK (B2FQ89), BETA_VIBC1 (A7N2P9), BETA_VIBVU (Q8D3K2), BETA_VIBVY (Q7MF12), BETA_XANAC (Q8PPG8), BETA_XANC5 (Q3BXK8), BETA_XANC8 (Q4UYN5), BETA_XANCB (B0RNU9), BETA_XANCP (Q8P5D7), BETA_YERP3 (A7FKL6), BETA_YERPA (Q1C932), BETA_YERPB (B2K8U4), BETA_YERPE (Q8ZGW0), BETA_YERPN (Q1CFR7), BETA_YERPP (A4TNP2), BETA_YERPS (Q66D54), BETA_YERPY (B1JSR0), CDH_PHACH (Q01738), CHDH_HUMAN (Q8NE62), CHDH_MOUSE (Q8BJ64), CHDH_RAT(Q6UPE0), CHOD_BREST (P22637), CHOD_STRS0 (P12676), CITC_MONPU (A0A142PTM2), CITC_MONRU (A0A161CEV4), DHGL_DROME (P18173), DHGL_DROPS (P18172), EO_BOMMO(H6AGY0), ERIK_HERER (P0DO29), GMCH_MALS4 (M5EAX2), GMCH_MALSM (Q5GMY3), GOX_ASPNG (P13006), GOX_PENAG (P81156), GOX_TALFL (Q92452), MDL1_PRUDU (O24243), MDL1_PRUSE (P52706), MDL2_PRUDU (Q945K2), MDL2_PRUSE (O50048), MDL3_PRUSE (P52707), MDLL_ARATH (Q9SSM2), PNO_MICLT (Q9AJD6), SDH_GLUOY (Q47944), Y1279_MYCTO (P9WMV4), Y1279_MYCTU (P9WMV5), Y1310_MYCBO (P64264), Y4NJ_SINFN (P55582), YTH2_RHOER (P46371)» more
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| UniProtKB/Swiss-Prot False negative sequences |
42 sequences
4PADH_RHILO (Q988C9), AFLK_ASPPU (Q12062), CHOD_MYCTO (P9WMV8), CHOD_MYCTU (P9WMV9), CHOX_ARTGO (Q7X2H8), FAO1_ARATH (Q9ZWB9), FAO1_LOTJA (B5WWZ8), FAO2_LOTJA (B5WWZ9), FAO3_ARATH (Q9LW56), FAO4A_ARATH (O65709), FAO4B_ARATH (Q94BP3), FAP_CHLRE (A8JHB7), FAP_CHLVA (A0A248QE08), FDHL_GLUJA (M1VMF7), GADH1_PANCY (O34214), HTH_ARATH (Q9S746), LIVQ_STRLV (Q2MF66), MDL4_PRUSE (O82784), MPDB_MYCAO (Q3YAT3), NEOG_STRFR (Q53U15), NINAG_DROME (Q9VGP2), P2OX_EMENI (Q5B2E9), P2OX_LYOSH (Q75ZP8), P2OX_PENSG (Q8J136), P2OX_PHACH (Q6QWR1), P2OX_PHLGI (Q6UG02), P2OX_TRAHI (P59097), P2OX_TRAPU (Q5G234), P2OX_TRAVE (P79076), P2OX_TRIMT (Q8J2V8), PDH1_AGABI (Q3L1D1), PDH1_AGACM (V5NDL4), PDH1_AGAXA (V5NC32), PDH1_LEUMG (Q3L245), PDH2_LEUMG (Q3L243), PDH3_LEUMG (Q0R4L2), Y492_MYCTO (P9WMV6), Y492_MYCTU (P9WMV7), YL128_MIMIV (Q5UPK7), YL894_MIMIV (Q5UQZ1), YR135_MIMIV (Q5UPL2), YR832_MIMIV (Q5UQH9)» more |
| PDB [Detailed view] |
46 PDB
1B4V; 1B8S; 1CBO; 1CC2; 1CF3; 1COY; 1GAL; 1GPE; 1IJH; 1JU2; 1KDG; 1MXT; 1N1P; 1N4U; 1N4V; 1N4W; 1NAA; 2GEW; 3B3R; 3B6D; 3CNJ; 3COX; 3GDN; 3GDP; 3GYI; 3GYJ; 3QVP; 3QVR; 4REK; 4U2L; 4U2S; 4U2T; 4XWR; 4XXG; 5EB4; 5EB5; 5HSA; 5I68; 5KWF; 5NIT; 5NIW; 6JBY; 6LQY; 6LR8; 7BWP; 7CGS » more |