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Entry: PS00623

General information about the entry

Entry name [info] GMC_OXRED_1
Accession [info] PS00623
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-APR-2006 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00543

Name and characterization of the entry

Description [info] GMC oxidoreductases signature 1.
Pattern [info]
[GA]-[RKNC]-x-[LIVW]-G(2)-[GST](2)-x-[LIVM]-[NH]-x(3)-[FYWA]-x(2)-[PAG]-
x(5)-[DNESHQA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 156 in 156 different sequences
Number of true positive hits 156 in 156 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 42
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 78.79 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
156 sequences

ALKJ_PSEOL  (Q00593    ), ALKJ_PSEPU  (Q9WWW2    ), ALOX1_KOMPC (F2QY27    ), 
ALOX1_KOMPG (P04842    ), ALOX2_KOMPC (F2R038    ), ALOX2_KOMPG (C4R702    ), 
ALOX_CANBO  (Q00922    ), ALOX_PICAN  (P04841    ), ASC9_DIDFA  (A0A5C1RDA6), 
BETA1_CHRSD (Q1QXE1    ), BETA2_CHRSD (Q9L4K0    ), BETA_ACIAD  (Q6FDF9    ), 
BETA_ACIB3  (B7GYG5    ), BETA_ACIB5  (B7I895    ), BETA_ACIBC  (B2HV79    ), 
BETA_ACIBS  (B0VST3    ), BETA_ACIBY  (B0V945    ), BETA_AGRFC  (Q8UH55    ), 
BETA_AGRRK  (B9JBA2    ), BETA_BRUC2  (A9M9H8    ), BETA_BRUME  (Q8YFY2    ), 
BETA_BRUO2  (A5VPA6    ), BETA_BRUSI  (B0CKN4    ), BETA_BRUSU  (Q8G1Z8    ), 
BETA_BURA4  (B1Z034    ), BETA_BURCA  (Q1BQE2    ), BETA_BURCC  (B1K707    ), 
BETA_BURCH  (A0B2F7    ), BETA_BURCJ  (B4EHJ2    ), BETA_BURCM  (Q0B711    ), 
BETA_BURL3  (Q39A44    ), BETA_BURM1  (A9AMZ9    ), BETA_BURMA  (Q62CH8    ), 
BETA_BURP1  (Q3JLL7    ), BETA_BURPS  (Q63KK7    ), BETA_BURTA  (Q2T6D0    ), 
BETA_BURVG  (A4JJG6    ), BETA_CITK8  (A8AJN0    ), BETA_CROS8  (A7MFA8    ), 
BETA_ECO24  (A7ZI50    ), BETA_ECO27  (B7UJG4    ), BETA_ECO45  (B7MCD0    ), 
BETA_ECO55  (B7L439    ), BETA_ECO57  (Q8X6C6    ), BETA_ECO5E  (B5Z1R0    ), 
BETA_ECO8A  (B7M2V5    ), BETA_ECODH  (B1XE52    ), BETA_ECOHS  (A7ZWV4    ), 
BETA_ECOL5  (Q0TKW1    ), BETA_ECOL6  (Q8FKI9    ), BETA_ECOLC  (B1J0W6    ), 
BETA_ECOLI  (P17444    ), BETA_ECOLU  (B7N8L3    ), BETA_ECOSE  (B6I074    ), 
BETA_ECOSM  (B1LIJ7    ), BETA_ECOUT  (Q1RFM3    ), BETA_KLEP3  (B5Y008    ), 
BETA_KLEP7  (A6T613    ), BETA_OCHA4  (A6X2G7    ), BETA_PARP8  (B2JS89    ), 
BETA_PARPJ  (B2TCJ8    ), BETA_PARXL  (Q13NG7    ), BETA_PECAS  (Q6D6D9    ), 
BETA_PECCP  (C6DKY4    ), BETA_PHOPR  (Q6LGH5    ), BETA_PROMH  (B4EX94    ), 
BETA_PSE14  (Q48CM7    ), BETA_PSEA7  (A6VEI3    ), BETA_PSEA8  (B7V5R3    ), 
BETA_PSEAB  (Q02DZ0    ), BETA_PSEAE  (Q9HTJ2    ), BETA_PSEE4  (Q1IG70    ), 
BETA_PSEF5  (Q4K4K7    ), BETA_PSEFS  (C3K3D3    ), BETA_PSEMY  (A4XPI5    ), 
BETA_PSEP1  (A5WA97    ), BETA_PSEPF  (Q3K5H3    ), BETA_PSEPG  (B0KN19    ), 
BETA_PSEPK  (Q88CW6    ), BETA_PSESM  (Q88AE7    ), BETA_PSEU2  (Q4ZM63    ), 
BETA_RHIE6  (B3PTE0    ), BETA_RHIEC  (Q2KB43    ), BETA_RHIL3  (Q1MJU4    ), 
BETA_RHILO  (Q985M5    ), BETA_RHILW  (B5ZUG2    ), BETA_RHIME  (P54223    ), 
BETA_SERP5  (A8GBX9    ), BETA_SHIF8  (Q0T7N0    ), BETA_SINFN  (C3MIE4    ), 
BETA_SINMW  (A6U6Y8    ), BETA_STAA1  (A7X6Z3    ), BETA_STAA2  (A6U4Z2    ), 
BETA_STAA3  (Q2FDP9    ), BETA_STAA8  (Q2FV11    ), BETA_STAA9  (A5IW37    ), 
BETA_STAAB  (Q2YWJ5    ), BETA_STAAC  (Q5HCU1    ), BETA_STAAE  (A6QK99    ), 
BETA_STAAM  (P60336    ), BETA_STAAN  (P60337    ), BETA_STAAR  (Q6GDJ1    ), 
BETA_STAAS  (Q6G664    ), BETA_STAAT  (A8Z5A4    ), BETA_STAAW  (Q8NUM0    ), 
BETA_STAEQ  (Q5HL11    ), BETA_STAES  (Q8CMY2    ), BETA_STAHJ  (Q4L9D7    ), 
BETA_STAS1  (Q4A0Q1    ), BETA_STAXY  (Q9X2M2    ), BETA_STRM5  (B4SHV9    ), 
BETA_STRMK  (B2FQ89    ), BETA_VIBCB  (A7N2P9    ), BETA_VIBVU  (Q8D3K2    ), 
BETA_VIBVY  (Q7MF12    ), BETA_XANAC  (Q8PPG8    ), BETA_XANC5  (Q3BXK8    ), 
BETA_XANC8  (Q4UYN5    ), BETA_XANCB  (B0RNU9    ), BETA_XANCP  (Q8P5D7    ), 
BETA_YERP3  (A7FKL6    ), BETA_YERPA  (Q1C932    ), BETA_YERPB  (B2K8U4    ), 
BETA_YERPE  (Q8ZGW0    ), BETA_YERPN  (Q1CFR7    ), BETA_YERPP  (A4TNP2    ), 
BETA_YERPS  (Q66D54    ), BETA_YERPY  (B1JSR0    ), CDH_PHACH   (Q01738    ), 
CHDH_HUMAN  (Q8NE62    ), CHDH_MOUSE  (Q8BJ64    ), CHDH_RAT    (Q6UPE0    ), 
CHOD_BREST  (P22637    ), CHOD_STRS0  (P12676    ), CITC_MONPU  (A0A142PTM2), 
CITC_MONRU  (A0A161CEV4), DHGL_DROME  (P18173    ), DHGL_DROPS  (P18172    ), 
GMCH_MALS4  (M5EAX2    ), GMCH_MALSM  (Q5GMY3    ), GOX_ASPNG   (P13006    ), 
GOX_PENAG   (P81156    ), GOX_TALFL   (Q92452    ), MDL1_PRUDU  (O24243    ), 
MDL1_PRUSE  (P52706    ), MDL2_PRUDU  (Q945K2    ), MDL2_PRUSE  (O50048    ), 
MDL3_PRUSE  (P52707    ), MDLL_ARATH  (Q9SSM2    ), PNO_MICLT   (Q9AJD6    ), 
SDH_GLUOY   (Q47944    ), Y1279_MYCTO (P9WMV4    ), Y1279_MYCTU (P9WMV5    ), 
Y1310_MYCBO (P64264    ), Y4NJ_SINFN  (P55582    ), YTH2_RHOER  (P46371    )
» more

UniProtKB/Swiss-Prot
False negative sequences
42 sequences

4PADH_RHILO (Q988C9    ), AFLK_ASPPU  (Q12062    ), CHOD_MYCTO  (P9WMV8    ), 
CHOD_MYCTU  (P9WMV9    ), CHOX_ARTGO  (Q7X2H8    ), FAO1_ARATH  (Q9ZWB9    ), 
FAO1_LOTJA  (B5WWZ8    ), FAO2_LOTJA  (B5WWZ9    ), FAO3_ARATH  (Q9LW56    ), 
FAO4A_ARATH (O65709    ), FAO4B_ARATH (Q94BP3    ), FAP_CHLRE   (A8JHB7    ), 
FAP_CHLVA   (A0A248QE08), FDHL_GLUJA  (M1VMF7    ), GADH1_PANCY (O34214    ), 
HTH_ARATH   (Q9S746    ), LIVQ_STRLV  (Q2MF66    ), MDL4_PRUSE  (O82784    ), 
MPDB_MYCAO  (Q3YAT3    ), NEOG_STRFR  (Q53U15    ), NINAG_DROME (Q9VGP2    ), 
P2OX_EMENI  (Q5B2E9    ), P2OX_LYOSH  (Q75ZP8    ), P2OX_PENSG  (Q8J136    ), 
P2OX_PHACH  (Q6QWR1    ), P2OX_PHLGI  (Q6UG02    ), P2OX_TRAHI  (P59097    ), 
P2OX_TRAPU  (Q5G234    ), P2OX_TRAVE  (P79076    ), P2OX_TRIMT  (Q8J2V8    ), 
PDH1_AGABI  (Q3L1D1    ), PDH1_AGACM  (V5NDL4    ), PDH1_AGAXA  (V5NC32    ), 
PDH1_LEUMG  (Q3L245    ), PDH2_LEUMG  (Q3L243    ), PDH3_LEUMG  (Q0R4L2    ), 
Y492_MYCTO  (P9WMV6    ), Y492_MYCTU  (P9WMV7    ), YL128_MIMIV (Q5UPK7    ), 
YL894_MIMIV (Q5UQZ1    ), YR135_MIMIV (Q5UPL2    ), YR832_MIMIV (Q5UQH9    )
» more

PDB
[Detailed view]
41 PDB

1B4V; 1B8S; 1CBO; 1CC2; 1CF3; 1COY; 1GAL; 1GPE; 1IJH; 1JU2; 1KDG; 1MXT; 1N1P; 1N4U; 1N4V; 1N4W; 1NAA; 2GEW; 3B3R; 3B6D; 3CNJ; 3COX; 3GDN; 3GDP; 3GYI; 3GYJ; 3QVP; 3QVR; 4REK; 4U2L; 4U2S; 4U2T; 4XWR; 4XXG; 5EB4; 5EB5; 5HSA; 5I68; 5KWF; 5NIT; 5NIW
» more

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