PROSITE entry PS00625

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General information about the entry

Entry name [info]	RCC1_1
Accession [info]	PS00625
Entry type [info]	PATTERN
Date [info]	01-JUN-1992 CREATED; 01-NOV-1997 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00544
Associated ProRule [info]	PRU00235

Name and characterization of the entry

Description [info]	Regulator of chromosome condensation (RCC1) signature 1.
Pattern [info]	G-x-N-D-x(2)-[AV]-L-G-R-x-T.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	8 in 8 different sequences
Number of true positive hits	8 in 8 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	73
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	9.88 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

8 sequences

RCC1_CANAX  (P52499), RCC1_DROME  (P25171), RCC1_HUMAN  (P18754),

RCC1_MESAU  (P23800), RCC1_MOUSE  (Q8VE37), RCC1_SCHPO  (P28745), 
RCC1_XENLA  (P25183), RCC1_YEAST  (P21827)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

73 sequences

ALS2_DROME  (Q9VNZ8), ALS2_HUMAN  (Q96Q42), ALS2_MOUSE  (Q920R0),

ALS2_PANTR  (Q5BIW4), ALS2_RAT(P0C5Y8), ATS1_YEAST  (P31386), 
BTB1_SCHPO  (O74881), FBX24_HUMAN (O75426), FBX24_MACFA (Q4R327), 
FBX24_MOUSE (Q9D417), FMP25_YEAST (Q08023), GACGG_DICDI (Q54VW7), 
GEFC_DICDI  (Q8IS20), HERC1_HUMAN (Q15751), HERC2_DROME (Q9VR91), 
HERC2_HUMAN (O95714), HERC2_MOUSE (Q4U2R1), HERC3_HUMAN (Q15034), 
HERC4_HUMAN (Q5GLZ8), HERC4_MOUSE (Q6PAV2), HERC4_RAT   (Q5PQN1), 
HERC5_HUMAN (Q9UII4), HERC6_HUMAN (Q8IVU3), HERC6_MOUSE (F2Z461), 
HIW_DROME   (Q9NB71), IBTK_HUMAN  (Q9P2D0), IBTK_MOUSE  (Q6ZPR6), 
IBTK_XENLA  (Q6NRS1), MYCB2_DANRE (F1RD40), MYCB2_HUMAN (O75592), 
MYCB2_MOUSE (Q7TPH6), NEK8_DANRE  (Q90XC2), NEK8_HUMAN  (Q86SG6), 
NEK8_MOUSE  (Q91ZR4), NEK8_RAT(D3ZGQ5), NEK9_HUMAN  (Q8TD19), 
NEK9_MOUSE  (Q8K1R7), NEK9_XENLA  (Q7ZZC8), POF9_SCHPO  (O74381), 
PRAF1_ARATH (Q947D2), RCBT1_HUMAN (Q8NDN9), RCBT1_MOUSE (Q6NXM2), 
RCBT2_HUMAN (O95199), RCBT2_MOUSE (Q99LJ7), RCBT2_PONAB (Q5RCZ7), 
RCBT2_RAT   (Q6P798), RCC1L_HUMAN (Q96I51), RCC1L_MOUSE (Q9CYF5), 
RCC1_CAEEL  (Q18211), RCC2_DANRE  (Q6NYE2), RCC2_HUMAN  (Q9P258), 
RCC2_MOUSE  (Q8BK67), RCC2_XENLA  (Q52KW8), RCCD1_HUMAN (A6NED2), 
RCCD1_MACFA (Q4R828), RCCD1_MOUSE (Q8BTU7), RCCDA_DICDI (Q54X24), 
RCCDB_DICDI (P0C7G9), RCCDC_DICDI (Q54Q89), RPGRH_CAEEL (Q5DX34), 
RPGR_CANLF  (Q9N1T2), RPGR_HUMAN  (Q92834), RPGR_MOUSE  (Q9R0X5), 
RPM1_CAEEL  (Q17551), SAF1_YEAST  (P38352), SPKUL_DICDI (Q8SSY6), 
SRGEF_BOVIN (Q3MHW0), SRGEF_HUMAN (Q9UGK8), SRGEF_MOUSE (Q80YD6), 
TIRA_DICDI  (Q54HT1), TITIN_MOUSE (A2ASS6), UVR8_ARATH  (Q9FN03), 
YF94_SCHPO  (O42645)

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PDB
[Detailed view]

7 PDB

1A12; 1I2M; 3MVD; 3OF7; 5HQ2; 5T94; 5TBK