PROSITE entry PS00626
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General information about the entry
Entry name [info] | RCC1_2 |
Accession [info] | PS00626 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00544 |
Name and characterization of the entry
Description [info] | Regulator of chromosome condensation (RCC1) signature 2. |
Pattern [info] |
[LIVMFA]-[STAGC](2)-G-x-{TAV}-H-[STAGLI]-[LIVMFA]-{KI}-[LIVM]. |
Numerical results [info]
Total number of hits | 382 in 313 different sequences |
Number of true positive hits | 133 in 64 different sequences |
Number of 'unknown' hits | 2 in 2 different sequences |
Number of false positive hits | 247 in 247 different sequences |
Number of false negative sequences | 18 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 35.00 % |
Recall (true positives / (true positives + false negatives)) | 88.08 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 5 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
64 sequences
ALS2_DROME (Q9VNZ8), ALS2_HUMAN (Q96Q42), ALS2_MOUSE (Q920R0), ALS2_PANTR (Q5BIW4), ALS2_RAT(P0C5Y8), ATS1_YEAST (P31386), FMP25_YEAST (Q08023), GEFC_DICDI (Q8IS20), HERC1_HUMAN (Q15751), HERC2_DROME (Q9VR91), HERC2_HUMAN (O95714), HERC2_MOUSE (Q4U2R1), HERC3_HUMAN (Q15034), HERC4_HUMAN (Q5GLZ8), HERC4_MOUSE (Q6PAV2), HERC4_RAT (Q5PQN1), HERC5_HUMAN (Q9UII4), HERC6_HUMAN (Q8IVU3), HERC6_MOUSE (F2Z461), HIW_DROME (Q9NB71), MYCB2_DANRE (F1RD40), MYCB2_HUMAN (O75592), MYCB2_MOUSE (Q7TPH6), NEK9_XENLA (Q7ZZC8), PRAF1_ARATH (Q947D2), RCBT1_HUMAN (Q8NDN9), RCBT1_MOUSE (Q6NXM2), RCBT2_HUMAN (O95199), RCBT2_MOUSE (Q99LJ7), RCBT2_PONAB (Q5RCZ7), RCBT2_RAT (Q6P798), RCC1L_HUMAN (Q96I51), RCC1_CAEEL (Q18211), RCC1_CANAX (P52499), RCC1_DROME (P25171), RCC1_HUMAN (P18754), RCC1_MESAU (P23800), RCC1_MOUSE (Q8VE37), RCC1_SCHPO (P28745), RCC1_XENLA (P25183), RCC1_YEAST (P21827), RCC2_DANRE (Q6NYE2), RCC2_HUMAN (Q9P258), RCC2_MOUSE (Q8BK67), RCC2_XENLA (Q52KW8), RCCD1_HUMAN (A6NED2), RCCD1_MACFA (Q4R828), RCCD1_MOUSE (Q8BTU7), RCCDA_DICDI (Q54X24), RCCDB_DICDI (P0C7G9), RPGRH_CAEEL (Q5DX34), RPGR_CANLF (Q9N1T2), RPGR_HUMAN (Q92834), RPGR_MOUSE (Q9R0X5), RPM1_CAEEL (Q17551), RUG3_ARATH (Q9FJG9), SAF1_YEAST (P38352), SPKUL_DICDI (Q8SSY6), SRGEF_BOVIN (Q3MHW0), SRGEF_HUMAN (Q9UGK8), SRGEF_MOUSE (Q80YD6), TIRA_DICDI (Q54HT1), UVR8_ARATH (Q9FN03), YF94_SCHPO (O42645)» more
|
UniProtKB/Swiss-Prot False negative sequences |
18 sequences
BTB1_SCHPO (O74881), FBX24_HUMAN (O75426), FBX24_MACFA (Q4R327), FBX24_MOUSE (Q9D417), GACGG_DICDI (Q54VW7), IBTK_HUMAN (Q9P2D0), IBTK_MOUSE (Q6ZPR6), IBTK_XENLA (Q6NRS1), NEK8_DANRE (Q90XC2), NEK8_HUMAN (Q86SG6), NEK8_MOUSE (Q91ZR4), NEK8_RAT(D3ZGQ5), NEK9_HUMAN (Q8TD19), NEK9_MOUSE (Q8K1R7), POF9_SCHPO (O74381), RCC1L_MOUSE (Q9CYF5), RCCDC_DICDI (Q54Q89), TITIN_MOUSE (A2ASS6)» more |
UniProtKB/Swiss-Prot 'Unknown' sequences |
2 sequences
ATTY_CAEEL (Q93703), YENB_YERET (B6A880) |
UniProtKB/Swiss-Prot False positive sequences |
247 sequences
095R_FRG3G (Q6GZN0), ABRB_ABRPR (Q06077), ACBM_ACTS5 (Q8RIS8), ACCD1_ROSS1 (A5UQC0), ACUK_AJECG (C0NCM1), ACUK_AJECN (A6R213), ACYP_PECAS (Q6D6C4), ADPG1_ARATH (O23147), ADPG2_ARATH (Q8RY29), AGS_AGRRH (P27875), AHPF_STAAM (P66012), AHPF_STAAN (P99118), AHPF_STAAR (Q6GJR8), AHPF_STAAS (Q6GC92), AHPF_STAAW (P66013), ALAT_SCHPO (Q10334), AQP1_RHIIR (I3W9F6), AREL1_HUMAN (O15033), AREL1_MOUSE (Q8CHG5), ARK1_CAEEL (G5EBZ8), AROA2_STRCO (Q9L213), AROC_LEIXX (Q6AF97), AROC_STRMU (Q8DUW1), AROC_STRP6 (Q5XCT6), AROC_STRP8 (Q8P1H5), AROC_STRPG (A2RF78), AROC_STRSV (A3CNV6), AROC_TROW8 (Q83HU6), AROC_TROWT (Q83GD5), ARSB1_ECOLX (P08691), AT18C_ARATH (Q8GYD7), AT18D_ARATH (Q0WPK3), ATGT_SULTO (Q975U5), ATTY_TRYCR (P33447), AXE1_ASPAW (Q92194), AXE1_ASPFI (Q96W96), AXE1_ASPFU (Q4WBW4), AXE1_ASPNC (A2QZI3), AXE1_ASPTN (Q0C8Z1), AXE1_NEOFI (A1DBP9), BASB_HALS3 (B0R6I5), BCH_HAELA (Q9SPK6), BOYB_DROME (Q9VNP5), C508B_DICDI (Q54SK0), CLA2_CLACD (A0A0Y0M151), CLH_DROME (P29742), COBN_PSEAE (Q9HZQ3), COPE2_ARATH (O64748), CSGE_ECO57 (P0AE97), CSGE_ECOL6 (P0AE96), CSGE_ECOLI (P0AE95), CTAA_PARDP (A1B8C2), CTAA_RUEPO (Q5LRS1), CURS1_ASPTE (L7X8J4), CYLD_BOVIN (Q1RMU2), DABA_HYDCU (Q31HC3), DAPAT_NATTJ (B2A250), DDB1A_ARATH (Q9M0V3), DDB1B_ARATH (O49552), DDB1_ORYSJ (Q6L4S0), DDB1_SOLCE (Q6E7D1), DDB1_SOLLC (Q6QNU4), DESA_SPHSK (G2IJ05), DHC3_ALTCI (A0A0N7D4P6), DLG5_HUMAN (Q8TDM6), DLG5_MOUSE (E9Q9R9), DNAJ_STRPN (P95830), DNAJ_STRR6 (Q8CWT2), DTDA_HALS3 (B0R384), DTDA_HALSA (Q9HS70), EGFL8_PIG (A5A8Y8), EGTE_MYCTO (Q7D515), EGTE_MYCTU (O69668), EIF3E_YARLI (Q6C0Q2), ELCG_PHANO (Q0UHZ8), ELP2_DROME (Q7K4B3), FABH_STRLI (Q9F6D4), FAP_CHLRE (A8JHB7), GCSP_GLUOX (Q5FRY0), GLGA2_NOSS1 (Q8Z0Q9), GLGA2_SYNY3 (P72623), GLGB_BURTA (Q2T6R3), GOPC_HUMAN (Q9HD26), GOPC_MOUSE (Q8BH60), GOPC_PONAB (Q5RD32), GOX_ASPNG (P13006), GP183_RAT (D4A7K7), GPMI_GLUOX (Q5FU33), GPMI_RHOPA (Q6NCX7), GPMI_STRCO (Q9L214), GRA1_GIBZE (A0A098D1P1), GRP1_PETHY (P09789), HDA4_CAEEL (O17323), HIS1_PROMM (Q7V6G9), HIS4_DEIRA (Q9RRJ5), HIS4_VIBCH (Q9KSW9), HOX16_ORYSI (A2X980), HOX16_ORYSJ (Q6YWR4), ICE1_MOUSE (E9Q286), IF61_TRYCC (Q4E097), ILVD_MYCBO (P65155), ILVD_MYCTO (P9WKJ4), ILVD_MYCTU (P9WKJ5), INT13_XENLA (Q6GLY5), INT13_XENTR (Q6DIK0), KATIP_XENLA (Q5XK85), KPR5_SCHPO (P87171), LCKB2_ARATH (O82359), LRRK2_HUMAN (Q5S007), LRRK2_MOUSE (Q5S006), MALD1_HUMAN (Q9BSK0), MDV1_USTMA (Q4P8R5), MEND_DECAR (Q47DK0), MQO_AGRFC (Q8UH73), MSBA_METCA (Q60AA3), MURD_NOVAD (Q2G997), NORG_STAA3 (Q2FKF1), NORG_STAA8 (Q2G1P1), NORG_STAAB (Q2YUS3), NORG_STAAC (Q5HJR1), NORG_STAAM (Q99XA5), NORG_STAAN (Q7A875), NORR_VIBVU (Q8D4F9), NORR_VIBVY (Q7MFY9), NUD24_ARATH (P0C026), PCBA_PROMP (O07295), PDXK_TREPA (O83153), PEPL1_HUMAN (Q8NDH3), PEPL1_MOUSE (Q6NSR8), PEPL1_PONAB (Q5R7G6), PGLR1_MAIZE (P26216), PGLR2_JUNAS (Q9FY19), PGLR2_MAIZE (P35338), PGLR3_MAIZE (P35339), PGLR4_ARATH (Q949Z1), PGLR_ACTDE (P35336), PGLR_CUPSE (C0HKB1), PGLR_GOSBA (Q39766), PGLR_GOSHI (Q39786), PGLR_MALDO (P48978), PGLR_OENOR (P24548), PGLR_PERAE (Q02096), PGLR_PRUPE (P48979), PGLR_SOLLC (P05117), PGLR_TOBAC (Q05967), PHNW_PSEAB (Q02JF1), PHNW_PSEAE (Q9I434), PHNW_PSEPF (Q3K9Y3), POC1B_RAT (D3ZW91), POLG_HAV88 (Q8V0N6), POLG_HAVCF (Q5Y944), POLG_HAVCR (P06442), POLG_HAVGB (Q67825), POLG_HAVH2 (A3FMB2), POLG_HAVHA (Q05794), POLG_HAVHM (P08617), POLG_HAVJ8 (A5LGW7), POLG_HAVLA (P06441), POLG_HAVMB (P13901), POLG_HAVNO (Q9DWR1), POLG_HAVS2 (P14553), POLG_HAVSC (P31788), POLN_EOPV (Q6UP17), PP16A_HUMAN (Q96I34), PP16A_MOUSE (Q923M0), PPE14_MYCTO (P9WI32), PPE14_MYCTU (P9WI33), PREU1_PREIS (P9WET8), PRO1_CAEBR (A8WSU9), PRO1_CAEEL (Q22006), PROF_TRYBB (Q26734), PRPD1_CORGL (Q8NSH9), PULA_THEMA (O33840), PYRE_COXBU (Q45918), PYRE_ENTFA (P0DH75), PYRE_ENTFO (F2MMN7), PYRE_FUSNN (P58856), PYRE_HALH5 (Q9K9W3), PYRE_LACJO (Q74J27), PYRE_LACPL (P77889), PYRE_LISIN (Q92AH7), PYRE_LISMF (Q71YI5), PYRE_LISMO (Q8Y668), PYRE_MALP2 (Q8EUY4), PYRE_OCEIH (Q8ER35), PYRE_STAAC (Q5HGM7), PYRE_STAAM (P65916), PYRE_STAAN (P99144), PYRE_STAAR (Q6GHN0), PYRE_STAAS (Q6GA08), PYRE_STAAW (Q8NX25), PYRE_STAEQ (Q5HPY6), PYRE_STAES (Q8CSW7), PYRE_STAHJ (Q4L5Q7), PYRE_STAS1 (Q49WY6), QRT2_ARATH (Q9SFB7), RAV1_SCHPO (Q9Y817), RETST_HUMAN (Q6NUM9), RH13_ARATH (Q93Y39), RIBA_PECAS (Q6D5U5), RIBA_SALCH (Q57NU9), RIBA_SALPA (Q5PCY8), RIBA_SALTI (P66031), RIBA_SALTY (P66030), RIBA_YERPE (Q8ZEF0), RIBA_YERPS (Q66AI6), RL25_BORBR (Q7WNY3), RL25_BORPA (Q7W180), RL25_BORPE (Q7VUH2), RL6_MYCS5 (Q4A5D6), RLMG_PSEE4 (Q1I4K4), RLMG_PSEPG (B0KHQ8), RLMG_PSEPW (B1J2W7), RNE_NOSS1 (Q8YP69), RS8_FRAAA (Q0RRQ7), RTBDN_CANLF (Q4TUC0), SADH_MYCTO (P9WGP8), SADH_MYCTU (P9WGP9), SALK6_KALTU (W8P8Q3), SHBG_CROCR (A0EQL2), SL11_ORYSI (A2ZLU6), SL11_ORYSJ (Q0IMG9), SYE_LEPBA (B0SCM4), SYE_LEPBP (B0SKQ2), T38B2_CAEEL (Q9NA73), TAF2_YEAST (P23255), TAF5_YEAST (P38129), TAZB_ASPTN (Q0CS88), TRM82_VANPO (A7TEN6), TRPG_THEKO (Q9YGB2), TSAD_ACET2 (A3DJ13), TSAD_CALS4 (Q8RC98), TUAE_BACSU (O32270), UBR2_HUMAN (Q8IWV8), UBR2_MOUSE (Q6WKZ8), UGPA3_ARATH (F4IY62), USB1_DANRE (Q6DEF6), VPC51_MYCTU (L0T5V6), WDR12_DICDI (Q54W52), WDR6_SCHPO (Q9USZ0), Y1082_HAEIN (P45026), Y1534_ARATH (C0LGG7), Y2599_MYCTO (P9WL68), Y2599_MYCTU (P9WL69), Y5258_ARATH (Q9FK81), YTM1_PICGU (A5DL92), ZD23B_DANRE (F1QX91)» more |
PDB [Detailed view] |
39 PDB
1A12; 1I2M; 3MVD; 3OF7; 4D4O; 4D4P; 4D4Q; 4D9S; 4DNU; 4DNV; 4DNW; 4IGL; 4JHN; 4JHP; 4NAA; 4NBM; 4NC4; 4O2W; 4QAM; 4X33; 5GWN; 5HQ2; 5KIS; 5T94; 5TBK; 5XGS; 6DD7; 6XZL; 6XZM; 6XZN; 7Q40; 7Q41; 7Q42; 7Q43; 7Q44; 7Q45; 7Q46; 7VGG; 8GQE » more |