PROSITE entry PS00626
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General information about the entry
Entry name [info] | RCC1_2 |
Accession [info] | PS00626 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00544 |
Name and characterization of the entry
Description [info] | Regulator of chromosome condensation (RCC1) signature 2. |
Pattern [info] |
[LIVMFA]-[STAGC](2)-G-x-{TAV}-H-[STAGLI]-[LIVMFA]-{KI}-[LIVM]. |
Numerical results [info]
Total number of hits | 382 in 313 different sequences |
Number of true positive hits | 133 in 64 different sequences |
Number of 'unknown' hits | 2 in 2 different sequences |
Number of false positive hits | 247 in 247 different sequences |
Number of false negative sequences | 18 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 35.00 % |
Recall (true positives / (true positives + false negatives)) | 88.08 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 5 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
64 sequences
ALS2_DROME (Q9VNZ8 ), ALS2_HUMAN (Q96Q42 ), ALS2_MOUSE (Q920R0 ), ALS2_PANTR (Q5BIW4 ), ALS2_RAT (P0C5Y8 ), ATS1_YEAST (P31386 ), FMP25_YEAST (Q08023 ), GEFC_DICDI (Q8IS20 ), HERC1_HUMAN (Q15751 ), HERC2_DROME (Q9VR91 ), HERC2_HUMAN (O95714 ), HERC2_MOUSE (Q4U2R1 ), HERC3_HUMAN (Q15034 ), HERC4_HUMAN (Q5GLZ8 ), HERC4_MOUSE (Q6PAV2 ), HERC4_RAT (Q5PQN1 ), HERC5_HUMAN (Q9UII4 ), HERC6_HUMAN (Q8IVU3 ), HERC6_MOUSE (F2Z461 ), HIW_DROME (Q9NB71 ), MYCB2_DANRE (F1RD40 ), MYCB2_HUMAN (O75592 ), MYCB2_MOUSE (Q7TPH6 ), NEK9_XENLA (Q7ZZC8 ), PRAF1_ARATH (Q947D2 ), RCBT1_HUMAN (Q8NDN9 ), RCBT1_MOUSE (Q6NXM2 ), RCBT2_HUMAN (O95199 ), RCBT2_MOUSE (Q99LJ7 ), RCBT2_PONAB (Q5RCZ7 ), RCBT2_RAT (Q6P798 ), RCC1L_HUMAN (Q96I51 ), RCC1_CAEEL (Q18211 ), RCC1_CANAX (P52499 ), RCC1_DROME (P25171 ), RCC1_HUMAN (P18754 ), RCC1_MESAU (P23800 ), RCC1_MOUSE (Q8VE37 ), RCC1_SCHPO (P28745 ), RCC1_XENLA (P25183 ), RCC1_YEAST (P21827 ), RCC2_DANRE (Q6NYE2 ), RCC2_HUMAN (Q9P258 ), RCC2_MOUSE (Q8BK67 ), RCC2_XENLA (Q52KW8 ), RCCD1_HUMAN (A6NED2 ), RCCD1_MACFA (Q4R828 ), RCCD1_MOUSE (Q8BTU7 ), RCCDA_DICDI (Q54X24 ), RCCDB_DICDI (P0C7G9 ), RPGRH_CAEEL (Q5DX34 ), RPGR_CANLF (Q9N1T2 ), RPGR_HUMAN (Q92834 ), RPGR_MOUSE (Q9R0X5 ), RPM1_CAEEL (Q17551 ), RUG3_ARATH (Q9FJG9 ), SAF1_YEAST (P38352 ), SPKUL_DICDI (Q8SSY6 ), SRGEF_BOVIN (Q3MHW0 ), SRGEF_HUMAN (Q9UGK8 ), SRGEF_MOUSE (Q80YD6 ), TIRA_DICDI (Q54HT1 ), UVR8_ARATH (Q9FN03 ), YF94_SCHPO (O42645 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
18 sequences
BTB1_SCHPO (O74881 ), FBX24_HUMAN (O75426 ), FBX24_MACFA (Q4R327 ), FBX24_MOUSE (Q9D417 ), GACGG_DICDI (Q54VW7 ), IBTK_HUMAN (Q9P2D0 ), IBTK_MOUSE (Q6ZPR6 ), IBTK_XENLA (Q6NRS1 ), NEK8_DANRE (Q90XC2 ), NEK8_HUMAN (Q86SG6 ), NEK8_MOUSE (Q91ZR4 ), NEK8_RAT (D3ZGQ5 ), NEK9_HUMAN (Q8TD19 ), NEK9_MOUSE (Q8K1R7 ), POF9_SCHPO (O74381 ), RCC1L_MOUSE (Q9CYF5 ), RCCDC_DICDI (Q54Q89 ), TITIN_MOUSE (A2ASS6 )» more |
UniProtKB/Swiss-Prot 'Unknown' sequences |
2 sequences
ATTY_CAEEL (Q93703 ), YENB_YERET (B6A880 ) |
UniProtKB/Swiss-Prot False positive sequences |
247 sequences
095R_FRG3G (Q6GZN0 ), ABRB_ABRPR (Q06077 ), ACBM_ACTS5 (Q8RIS8 ), ACCD1_ROSS1 (A5UQC0 ), ACUK_AJECG (C0NCM1 ), ACUK_AJECN (A6R213 ), ACYP_PECAS (Q6D6C4 ), ADPG1_ARATH (O23147 ), ADPG2_ARATH (Q8RY29 ), AGS_AGRRH (P27875 ), AHPF_STAAM (P66012 ), AHPF_STAAN (P99118 ), AHPF_STAAR (Q6GJR8 ), AHPF_STAAS (Q6GC92 ), AHPF_STAAW (P66013 ), ALAT_SCHPO (Q10334 ), AQP1_RHIIR (I3W9F6 ), AREL1_HUMAN (O15033 ), AREL1_MOUSE (Q8CHG5 ), ARK1_CAEEL (G5EBZ8 ), AROA2_STRCO (Q9L213 ), AROC_LEIXX (Q6AF97 ), AROC_STRMU (Q8DUW1 ), AROC_STRP6 (Q5XCT6 ), AROC_STRP8 (Q8P1H5 ), AROC_STRPG (A2RF78 ), AROC_STRSV (A3CNV6 ), AROC_TROW8 (Q83HU6 ), AROC_TROWT (Q83GD5 ), ARSB1_ECOLX (P08691 ), AT18C_ARATH (Q8GYD7 ), AT18D_ARATH (Q0WPK3 ), ATGT_SULTO (Q975U5 ), ATTY_TRYCR (P33447 ), AXE1_ASPAW (Q92194 ), AXE1_ASPFI (Q96W96 ), AXE1_ASPFU (Q4WBW4 ), AXE1_ASPNC (A2QZI3 ), AXE1_ASPTN (Q0C8Z1 ), AXE1_NEOFI (A1DBP9 ), BASB_HALS3 (B0R6I5 ), BCH_HAELA (Q9SPK6 ), BOYB_DROME (Q9VNP5 ), C508B_DICDI (Q54SK0 ), CLA2_CLACD (A0A0Y0M151), CLH_DROME (P29742 ), COBN_PSEAE (Q9HZQ3 ), COPE2_ARATH (O64748 ), CSGE_ECO57 (P0AE97 ), CSGE_ECOL6 (P0AE96 ), CSGE_ECOLI (P0AE95 ), CTAA_PARDP (A1B8C2 ), CTAA_RUEPO (Q5LRS1 ), CURS1_ASPTE (L7X8J4 ), CYLD_BOVIN (Q1RMU2 ), DABA_HYDCU (Q31HC3 ), DAPAT_NATTJ (B2A250 ), DDB1A_ARATH (Q9M0V3 ), DDB1B_ARATH (O49552 ), DDB1_ORYSJ (Q6L4S0 ), DDB1_SOLCE (Q6E7D1 ), DDB1_SOLLC (Q6QNU4 ), DESA_SPHSK (G2IJ05 ), DHC3_ALTCI (A0A0N7D4P6), DLG5_HUMAN (Q8TDM6 ), DLG5_MOUSE (E9Q9R9 ), DNAJ_STRPN (P95830 ), DNAJ_STRR6 (Q8CWT2 ), DTDA_HALS3 (B0R384 ), DTDA_HALSA (Q9HS70 ), EGFL8_PIG (A5A8Y8 ), EGTE_MYCTO (Q7D515 ), EGTE_MYCTU (O69668 ), EIF3E_YARLI (Q6C0Q2 ), ELCG_PHANO (Q0UHZ8 ), ELP2_DROME (Q7K4B3 ), FABH_STRLI (Q9F6D4 ), FAP_CHLRE (A8JHB7 ), GCSP_GLUOX (Q5FRY0 ), GLGA2_NOSS1 (Q8Z0Q9 ), GLGA2_SYNY3 (P72623 ), GLGB_BURTA (Q2T6R3 ), GOPC_HUMAN (Q9HD26 ), GOPC_MOUSE (Q8BH60 ), GOPC_PONAB (Q5RD32 ), GOX_ASPNG (P13006 ), GP183_RAT (D4A7K7 ), GPMI_GLUOX (Q5FU33 ), GPMI_RHOPA (Q6NCX7 ), GPMI_STRCO (Q9L214 ), GRA1_GIBZE (A0A098D1P1), GRP1_PETHY (P09789 ), HDA4_CAEEL (O17323 ), HIS1_PROMM (Q7V6G9 ), HIS4_DEIRA (Q9RRJ5 ), HIS4_VIBCH (Q9KSW9 ), HOX16_ORYSI (A2X980 ), HOX16_ORYSJ (Q6YWR4 ), ICE1_MOUSE (E9Q286 ), IF61_TRYCC (Q4E097 ), ILVD_MYCBO (P65155 ), ILVD_MYCTO (P9WKJ4 ), ILVD_MYCTU (P9WKJ5 ), INT13_XENLA (Q6GLY5 ), INT13_XENTR (Q6DIK0 ), KATIP_XENLA (Q5XK85 ), KPR5_SCHPO (P87171 ), LCKB2_ARATH (O82359 ), LRRK2_HUMAN (Q5S007 ), LRRK2_MOUSE (Q5S006 ), MALD1_HUMAN (Q9BSK0 ), MDV1_USTMA (Q4P8R5 ), MEND_DECAR (Q47DK0 ), MQO_AGRFC (Q8UH73 ), MSBA_METCA (Q60AA3 ), MURD_NOVAD (Q2G997 ), NORG_STAA3 (Q2FKF1 ), NORG_STAA8 (Q2G1P1 ), NORG_STAAB (Q2YUS3 ), NORG_STAAC (Q5HJR1 ), NORG_STAAM (Q99XA5 ), NORG_STAAN (Q7A875 ), NORR_VIBVU (Q8D4F9 ), NORR_VIBVY (Q7MFY9 ), NUD24_ARATH (P0C026 ), PCBA_PROMP (O07295 ), PDXK_TREPA (O83153 ), PEPL1_HUMAN (Q8NDH3 ), PEPL1_MOUSE (Q6NSR8 ), PEPL1_PONAB (Q5R7G6 ), PGLR1_MAIZE (P26216 ), PGLR2_JUNAS (Q9FY19 ), PGLR2_MAIZE (P35338 ), PGLR3_MAIZE (P35339 ), PGLR4_ARATH (Q949Z1 ), PGLR_ACTDE (P35336 ), PGLR_CUPSE (C0HKB1 ), PGLR_GOSBA (Q39766 ), PGLR_GOSHI (Q39786 ), PGLR_MALDO (P48978 ), PGLR_OENOR (P24548 ), PGLR_PERAE (Q02096 ), PGLR_PRUPE (P48979 ), PGLR_SOLLC (P05117 ), PGLR_TOBAC (Q05967 ), PHNW_PSEAB (Q02JF1 ), PHNW_PSEAE (Q9I434 ), PHNW_PSEPF (Q3K9Y3 ), POC1B_RAT (D3ZW91 ), POLG_HAV88 (Q8V0N6 ), POLG_HAVCF (Q5Y944 ), POLG_HAVCR (P06442 ), POLG_HAVGB (Q67825 ), POLG_HAVH2 (A3FMB2 ), POLG_HAVHA (Q05794 ), POLG_HAVHM (P08617 ), POLG_HAVJ8 (A5LGW7 ), POLG_HAVLA (P06441 ), POLG_HAVMB (P13901 ), POLG_HAVNO (Q9DWR1 ), POLG_HAVS2 (P14553 ), POLG_HAVSC (P31788 ), POLN_EOPV (Q6UP17 ), PP16A_HUMAN (Q96I34 ), PP16A_MOUSE (Q923M0 ), PPE14_MYCTO (P9WI32 ), PPE14_MYCTU (P9WI33 ), PREU1_PREIS (P9WET8 ), PRO1_CAEBR (A8WSU9 ), PRO1_CAEEL (Q22006 ), PROF_TRYBB (Q26734 ), PRPD1_CORGL (Q8NSH9 ), PULA_THEMA (O33840 ), PYRE_COXBU (Q45918 ), PYRE_ENTFA (P0DH75 ), PYRE_ENTFO (F2MMN7 ), PYRE_FUSNN (P58856 ), PYRE_HALH5 (Q9K9W3 ), PYRE_LACJO (Q74J27 ), PYRE_LACPL (P77889 ), PYRE_LISIN (Q92AH7 ), PYRE_LISMF (Q71YI5 ), PYRE_LISMO (Q8Y668 ), PYRE_MALP2 (Q8EUY4 ), PYRE_OCEIH (Q8ER35 ), PYRE_STAAC (Q5HGM7 ), PYRE_STAAM (P65916 ), PYRE_STAAN (P99144 ), PYRE_STAAR (Q6GHN0 ), PYRE_STAAS (Q6GA08 ), PYRE_STAAW (Q8NX25 ), PYRE_STAEQ (Q5HPY6 ), PYRE_STAES (Q8CSW7 ), PYRE_STAHJ (Q4L5Q7 ), PYRE_STAS1 (Q49WY6 ), QRT2_ARATH (Q9SFB7 ), RAV1_SCHPO (Q9Y817 ), RETST_HUMAN (Q6NUM9 ), RH13_ARATH (Q93Y39 ), RIBA_PECAS (Q6D5U5 ), RIBA_SALCH (Q57NU9 ), RIBA_SALPA (Q5PCY8 ), RIBA_SALTI (P66031 ), RIBA_SALTY (P66030 ), RIBA_YERPE (Q8ZEF0 ), RIBA_YERPS (Q66AI6 ), RL25_BORBR (Q7WNY3 ), RL25_BORPA (Q7W180 ), RL25_BORPE (Q7VUH2 ), RL6_MYCS5 (Q4A5D6 ), RLMG_PSEE4 (Q1I4K4 ), RLMG_PSEPG (B0KHQ8 ), RLMG_PSEPW (B1J2W7 ), RNE_NOSS1 (Q8YP69 ), RS8_FRAAA (Q0RRQ7 ), RTBDN_CANLF (Q4TUC0 ), SADH_MYCTO (P9WGP8 ), SADH_MYCTU (P9WGP9 ), SALK6_KALTU (W8P8Q3 ), SHBG_CROCR (A0EQL2 ), SL11_ORYSI (A2ZLU6 ), SL11_ORYSJ (Q0IMG9 ), SYE_LEPBA (B0SCM4 ), SYE_LEPBP (B0SKQ2 ), T38B2_CAEEL (Q9NA73 ), TAF2_YEAST (P23255 ), TAF5_YEAST (P38129 ), TAZB_ASPTN (Q0CS88 ), TRM82_VANPO (A7TEN6 ), TRPG_THEKO (Q9YGB2 ), TSAD_ACET2 (A3DJ13 ), TSAD_CALS4 (Q8RC98 ), TUAE_BACSU (O32270 ), UBR2_HUMAN (Q8IWV8 ), UBR2_MOUSE (Q6WKZ8 ), UGPA3_ARATH (F4IY62 ), USB1_DANRE (Q6DEF6 ), VPC51_MYCTU (L0T5V6 ), WDR12_DICDI (Q54W52 ), WDR6_SCHPO (Q9USZ0 ), Y1082_HAEIN (P45026 ), Y1534_ARATH (C0LGG7 ), Y2599_MYCTO (P9WL68 ), Y2599_MYCTU (P9WL69 ), Y5258_ARATH (Q9FK81 ), YTM1_PICGU (A5DL92 ), ZD23B_DANRE (F1QX91 )» more |
PDB [Detailed view] |
39 PDB
1A12; 1I2M; 3MVD; 3OF7; 4D4O; 4D4P; 4D4Q; 4D9S; 4DNU; 4DNV; 4DNW; 4IGL; 4JHN; 4JHP; 4NAA; 4NBM; 4NC4; 4O2W; 4QAM; 4X33; 5GWN; 5HQ2; 5KIS; 5T94; 5TBK; 5XGS; 6DD7; 6XZL; 6XZM; 6XZN; 7Q40; 7Q41; 7Q42; 7Q43; 7Q44; 7Q45; 7Q46; 7VGG; 8GQE » more |