PROSITE entry PS00652
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
Entry name [info] | TNFR_NGFR_1 |
Accession [info] | PS00652 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00561 |
Name and characterization of the entry
Description [info] | TNFR/NGFR family cysteine-rich region signature. |
Pattern [info] |
C-x(4,6)-[FYH]-x(5,10)-C-x(0,2)-C-x(2,3)-C-x(7,11)-C-x(4,6)-[DNEQSKP]- {PD}-{CP}-C. |
Numerical results [info]
Total number of hits | 178 in 117 different sequences |
Number of true positive hits | 138 in 78 different sequences |
Number of 'unknown' hits | 1 |
Number of false positive hits | 39 in 38 different sequences |
Number of false negative sequences | 20 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 77.97 % |
Recall (true positives / (true positives + false negatives)) | 87.34 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 3 |
Site [info] | disulfide at position 1 |
Site [info] | disulfide at position 5 |
Site [info] | disulfide at position 7 |
Site [info] | disulfide at position 9 |
Site [info] | disulfide at position 11 |
Site [info] | disulfide at position 16 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
78 sequences
A53R_VACCW (P24756), A53_VACCC (P21071), CD27_HUMAN (P26842), CD27_MOUSE (P41272), CRMB_CAMPM (P68636), CRMB_CAMPS (P68637), CRMB_CWPXG (O73559), CRMB_MONPV (P0DTN0), CRMB_VAR67 (P0DSV7), CRMB_VARV (P0DSV8), TNF6B_HUMAN (O95407), TNR11_HUMAN (Q9Y6Q6), TNR11_MOUSE (O35305), TNR14_HUMAN (Q92956), TNR14_MOUSE (Q80WM9), TNR16_CHICK (P18519), TNR16_HUMAN (P08138), TNR16_MOUSE (Q9Z0W1), TNR16_RAT (P07174), TNR19_HUMAN (Q9NS68), TNR19_MOUSE (Q9JLL3), TNR1A_BOVIN (O19131), TNR1A_HUMAN (P19438), TNR1A_MOUSE (P25118), TNR1A_PIG (P50555), TNR1A_RAT (P22934), TNR1B_HUMAN (P20333), TNR1B_MOUSE (P25119), TNR1B_RAT (Q80WY6), TNR21_HUMAN (O75509), TNR21_MOUSE (Q9EPU5), TNR21_RAT (D3ZF92), TNR22_MOUSE (Q9ER62), TNR23_MOUSE (Q9ER63), TNR25_HUMAN (Q93038), TNR26_MOUSE (P83626), TNR27_HUMAN (Q9HAV5), TNR27_MOUSE (Q8BX35), TNR3_HUMAN (P36941), TNR3_MOUSE (P50284), TNR4_HUMAN (P43489), TNR4_MOUSE (P47741), TNR4_RAT(P15725), TNR5_BOVIN (Q28203), TNR5_CALJA (Q3LRP1), TNR5_CANLF (Q7YRL5), TNR5_HORSE (Q3ZTK5), TNR5_HUMAN (P25942), TNR5_MOUSE (P27512), TNR5_PIG(Q8SQ34), TNR6_BOVIN (P51867), TNR6_CERAT (Q9BDN4), TNR6_HUMAN (P25445), TNR6_MACFA (Q9TSN4), TNR6_MACMU (Q9BDP2), TNR6_MACNE (Q9BDN0), TNR6_MOUSE (P25446), TNR6_PIG(O77736), TNR6_RAT(Q63199), TNR8_HUMAN (P28908), TNR8_MOUSE (Q60846), TNR9_HUMAN (Q07011), TNR9_MOUSE (P20334), TR10A_HUMAN (O00220), TR10B_HUMAN (O14763), TR10B_MOUSE (Q9QZM4), TR10C_HUMAN (O14798), TR10D_HUMAN (Q9UBN6), TR11B_BOVIN (A5D7R1), TR11B_HUMAN (O00300), TR11B_MOUSE (O08712), TR11B_RAT (O08727), TR13B_HUMAN (O14836), UL144_HCMVM (F5HAM0), UL144_HCMVO (Q68396), USP3_PINMG (H2A0M8), VT2_MYXVL (P29825), VT2_RFVKA (P25943)» more
|
UniProtKB/Swiss-Prot False negative sequences |
20 sequences
ACCR2_ARATH (O80963), C22L_VACCC (P21106), CRI4_MAIZE (O24585), EDAR_HUMAN (Q9UNE0), EDAR_MOUSE (Q9R187), EDAR_ORYLA (Q90VY2), TNR12_HUMAN (Q9NP84), TNR12_MOUSE (Q9CR75), TNR17_HUMAN (Q02223), TNR17_MOUSE (O88472), TNR18_HUMAN (Q9Y5U5), TNR18_MOUSE (O35714), TNR8_RAT(P97525), TR13B_MOUSE (Q9ET35), TR13C_HUMAN (Q96RJ3), TR13C_MOUSE (Q9D8D0), TR19L_HUMAN (Q969Z4), TR19L_MACFA (Q9N092), TR19L_MOUSE (Q8BX43), WGN_DROME (Q9VWS4)» more |
UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
SCGR7_HUMAN (A0A286YF01) |
UniProtKB/Swiss-Prot False positive sequences |
38 sequences
DEFI8_DROME (Q9VTT9), EPI1_CAEEL (Q21313), GG3_ARATH (Q6AWT8), IGFR1_BOVIN (A5PJC7), KR134_HYLAG (Q4W7H1), KR134_HYLLA (Q4W7H0), KR134_MACFA (Q4W7G9), KR134_MACFU (Q4W7G8), KR134_SAPAP (Q4W7G7), KR416_HUMAN (G5E9R7), KRA21_HUMAN (Q9BYU5), KRA22_HUMAN (Q9BYT5), KRA43_HUMAN (Q9BYR4), KRA44_HUMAN (Q9BYR3), KRA45_HUMAN (Q9BYR2), KRA47_HUMAN (Q9BYR0), KRA49_HUMAN (Q9BYQ8), KRA59_HUMAN (P26371), LAMA5_HUMAN (O15230), LAMA5_MOUSE (Q61001), M1BL1_HUMAN (P0DM35), MDFI_HUMAN (Q99750), MEDEA_ARATH (O65312), MT4_HUMAN (P47944), PTPR_CAEEL (H2KZM6), SCGR2_HUMAN (A0A286YFB4), SCGR3_HUMAN (A0A286YF60), SCGR4_HUMAN (A0A286YEV6), SCGR5_HUMAN (A0A286YF46), SCGR6_HUMAN (A0A286YF77), SCGR8_HUMAN (A0A286YFG1), SCGR9_HUMAN (P0DSO2), STIG1_SOLLC (Q6EEH1), TRI42_HUMAN (Q8IWZ5), TRI42_MOUSE (Q9D2H5), UL32_EHV2 (Q66671), YL264_MIMIV (Q5UPU7), YL724_MIMIV (Q5UNX6)» more |
PDB [Detailed view] |
90 PDB
1D0G; 1D4V; 1DU3; 1EXT; 1FT4; 1JMA; 1NCF; 1SG1; 1TNR; 1ZA3; 2AW2; 2H9G; 2HEV; 2HEY; 3ALQ; 3BUK; 3IJ2; 3K51; 3ME2; 3ME4; 3MHD; 3MI8; 3QBQ; 3QD6; 3QO4; 3THM; 3TJE; 3U3P; 3U3Q; 3U3S; 3U3T; 3U3V; 3URF; 3X3F; 4E4D; 4FHQ; 4GIQ; 4I9X; 4J6G; 4KGG; 4KGQ; 4MSV; 4MXW; 4N90; 4OD2; 4RSU; 4YN0; 5BNQ; 5CIR; 5DMI; 5DMJ; 5IHL; 5L36; 5T2Q; 5T2R; 5TL5; 5TLJ; 5TLK; 5WI8; 5WIW; 5WJF; 6A3V; 6A3W; 6BWV; 6CPR; 6CU0; 6FAX; 6MGP; 6MHR; 6MI2; 6MKZ; 6NG3; 6OGX; 6OKM; 6OKN; 6PE8; 6PE9; 6T3J; 6Y8K; 7D4B; 7KP7; 7KP8; 7KPB; 7KX0; 7MSG; 7MSJ; 7P3I; 7YXU; 8DPX; 8DS5 » more |