PROSITE entry PS00652
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General information about the entry
Entry name [info] | TNFR_NGFR_1 |
Accession [info] | PS00652 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE; 03-MAY-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00561 |
Name and characterization of the entry
Description [info] | TNFR/NGFR family cysteine-rich region signature. |
Pattern [info] |
C-x(4,6)-[FYH]-x(5,10)-C-x(0,2)-C-x(2,3)-C-x(7,11)-C-x(4,6)-[DNEQSKP]- {PD}-{CP}-C. |
Numerical results [info]
Total number of hits | 178 in 117 different sequences |
Number of true positive hits | 138 in 78 different sequences |
Number of 'unknown' hits | 1 |
Number of false positive hits | 39 in 38 different sequences |
Number of false negative sequences | 20 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 77.97 % |
Recall (true positives / (true positives + false negatives)) | 87.34 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 3 |
Site [info] | disulfide at position 1 |
Site [info] | disulfide at position 5 |
Site [info] | disulfide at position 7 |
Site [info] | disulfide at position 9 |
Site [info] | disulfide at position 11 |
Site [info] | disulfide at position 16 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
78 sequences
A53R_VACCW (P24756 ), A53_VACCC (P21071 ), CD27_HUMAN (P26842 ), CD27_MOUSE (P41272 ), CRMB_CAMPM (P68636 ), CRMB_CAMPS (P68637 ), CRMB_CWPXG (O73559 ), CRMB_MONPV (P0DTN0 ), CRMB_VAR67 (P0DSV7 ), CRMB_VARV (P0DSV8 ), TNF6B_HUMAN (O95407 ), TNR11_HUMAN (Q9Y6Q6 ), TNR11_MOUSE (O35305 ), TNR14_HUMAN (Q92956 ), TNR14_MOUSE (Q80WM9 ), TNR16_CHICK (P18519 ), TNR16_HUMAN (P08138 ), TNR16_MOUSE (Q9Z0W1 ), TNR16_RAT (P07174 ), TNR19_HUMAN (Q9NS68 ), TNR19_MOUSE (Q9JLL3 ), TNR1A_BOVIN (O19131 ), TNR1A_HUMAN (P19438 ), TNR1A_MOUSE (P25118 ), TNR1A_PIG (P50555 ), TNR1A_RAT (P22934 ), TNR1B_HUMAN (P20333 ), TNR1B_MOUSE (P25119 ), TNR1B_RAT (Q80WY6 ), TNR21_HUMAN (O75509 ), TNR21_MOUSE (Q9EPU5 ), TNR21_RAT (D3ZF92 ), TNR22_MOUSE (Q9ER62 ), TNR23_MOUSE (Q9ER63 ), TNR25_HUMAN (Q93038 ), TNR26_MOUSE (P83626 ), TNR27_HUMAN (Q9HAV5 ), TNR27_MOUSE (Q8BX35 ), TNR3_HUMAN (P36941 ), TNR3_MOUSE (P50284 ), TNR4_HUMAN (P43489 ), TNR4_MOUSE (P47741 ), TNR4_RAT (P15725 ), TNR5_BOVIN (Q28203 ), TNR5_CALJA (Q3LRP1 ), TNR5_CANLF (Q7YRL5 ), TNR5_HORSE (Q3ZTK5 ), TNR5_HUMAN (P25942 ), TNR5_MOUSE (P27512 ), TNR5_PIG (Q8SQ34 ), TNR6_BOVIN (P51867 ), TNR6_CERAT (Q9BDN4 ), TNR6_HUMAN (P25445 ), TNR6_MACFA (Q9TSN4 ), TNR6_MACMU (Q9BDP2 ), TNR6_MACNE (Q9BDN0 ), TNR6_MOUSE (P25446 ), TNR6_PIG (O77736 ), TNR6_RAT (Q63199 ), TNR8_HUMAN (P28908 ), TNR8_MOUSE (Q60846 ), TNR9_HUMAN (Q07011 ), TNR9_MOUSE (P20334 ), TR10A_HUMAN (O00220 ), TR10B_HUMAN (O14763 ), TR10B_MOUSE (Q9QZM4 ), TR10C_HUMAN (O14798 ), TR10D_HUMAN (Q9UBN6 ), TR11B_BOVIN (A5D7R1 ), TR11B_HUMAN (O00300 ), TR11B_MOUSE (O08712 ), TR11B_RAT (O08727 ), TR13B_HUMAN (O14836 ), UL144_HCMVM (F5HAM0 ), UL144_HCMVO (Q68396 ), USP3_PINMG (H2A0M8 ), VT2_MYXVL (P29825 ), VT2_RFVKA (P25943 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
20 sequences
ACCR2_ARATH (O80963 ), C22L_VACCC (P21106 ), CRI4_MAIZE (O24585 ), EDAR_HUMAN (Q9UNE0 ), EDAR_MOUSE (Q9R187 ), EDAR_ORYLA (Q90VY2 ), TNR12_HUMAN (Q9NP84 ), TNR12_MOUSE (Q9CR75 ), TNR17_HUMAN (Q02223 ), TNR17_MOUSE (O88472 ), TNR18_HUMAN (Q9Y5U5 ), TNR18_MOUSE (O35714 ), TNR8_RAT (P97525 ), TR13B_MOUSE (Q9ET35 ), TR13C_HUMAN (Q96RJ3 ), TR13C_MOUSE (Q9D8D0 ), TR19L_HUMAN (Q969Z4 ), TR19L_MACFA (Q9N092 ), TR19L_MOUSE (Q8BX43 ), WGN_DROME (Q9VWS4 )» more |
UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
SCGR7_HUMAN (A0A286YF01) |
UniProtKB/Swiss-Prot False positive sequences |
38 sequences
DEFI8_DROME (Q9VTT9 ), EPI1_CAEEL (Q21313 ), GG3_ARATH (Q6AWT8 ), IGFR1_BOVIN (A5PJC7 ), KR134_HYLAG (Q4W7H1 ), KR134_HYLLA (Q4W7H0 ), KR134_MACFA (Q4W7G9 ), KR134_MACFU (Q4W7G8 ), KR134_SAPAP (Q4W7G7 ), KR416_HUMAN (G5E9R7 ), KRA21_HUMAN (Q9BYU5 ), KRA22_HUMAN (Q9BYT5 ), KRA43_HUMAN (Q9BYR4 ), KRA44_HUMAN (Q9BYR3 ), KRA45_HUMAN (Q9BYR2 ), KRA47_HUMAN (Q9BYR0 ), KRA49_HUMAN (Q9BYQ8 ), KRA59_HUMAN (P26371 ), LAMA5_HUMAN (O15230 ), LAMA5_MOUSE (Q61001 ), M1BL1_HUMAN (P0DM35 ), MDFI_HUMAN (Q99750 ), MEDEA_ARATH (O65312 ), MT4_HUMAN (P47944 ), PTPR_CAEEL (H2KZM6 ), SCGR2_HUMAN (A0A286YFB4), SCGR3_HUMAN (A0A286YF60), SCGR4_HUMAN (A0A286YEV6), SCGR5_HUMAN (A0A286YF46), SCGR6_HUMAN (A0A286YF77), SCGR8_HUMAN (A0A286YFG1), SCGR9_HUMAN (P0DSO2 ), STIG1_SOLLC (Q6EEH1 ), TRI42_HUMAN (Q8IWZ5 ), TRI42_MOUSE (Q9D2H5 ), UL32_EHV2 (Q66671 ), YL264_MIMIV (Q5UPU7 ), YL724_MIMIV (Q5UNX6 )» more |
PDB [Detailed view] |
88 PDB
1D0G; 1D4V; 1DU3; 1EXT; 1FT4; 1JMA; 1NCF; 1SG1; 1TNR; 1ZA3; 2AW2; 2H9G; 2HEV; 2HEY; 3ALQ; 3BUK; 3IJ2; 3K51; 3ME2; 3ME4; 3MHD; 3MI8; 3QBQ; 3QD6; 3QO4; 3THM; 3TJE; 3U3P; 3U3Q; 3U3S; 3U3T; 3U3V; 3URF; 3X3F; 4E4D; 4FHQ; 4GIQ; 4I9X; 4J6G; 4KGG; 4KGQ; 4MSV; 4MXW; 4N90; 4OD2; 4RSU; 4YN0; 5BNQ; 5CIR; 5DMI; 5DMJ; 5IHL; 5L36; 5T2Q; 5T2R; 5TL5; 5TLJ; 5TLK; 5WI8; 5WIW; 5WJF; 6A3V; 6A3W; 6BWV; 6CPR; 6CU0; 6FAX; 6MGP; 6MHR; 6MI2; 6MKZ; 6NG3; 6OGX; 6OKM; 6OKN; 6PE8; 6PE9; 6T3J; 6Y8K; 7D4B; 7KP7; 7KP8; 7KPB; 7KX0; 7MSG; 7MSJ; 7P3I; 8DS5 » more |