Home  |  Contact
Entry: PS00669

General information about the entry

Entry name [info] GAS_VESICLE_A_2
Accession [info] PS00669
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE;
29-SEP-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00207

Name and characterization of the entry

Description [info] Gas vesicles protein GVPa signature 2.
Pattern [info] 
R-[LIVA](3)-A-[GS]-[LIVMFY]-x-[TK]-x(3)-[YFI]-[AG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_04 which contains 565'928 sequence entries.


Total number of hits 39 in 39 different sequences
Number of true positive hits 39 in 39 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 5
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.64 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 39 sequences 

GVPA1_HALSA (P08958    ), GVPA1_STRCO (Q9ZC13    ), GVPA2_HALSA (P08959    ), 

GVPA2_STRCO (Q9RJB4    ), GVPA_ANCAQ  (Q9RH31    ), GVPA_BACME  (O68680    ), 
GVPA_BRASO  (A4YMQ7    ), GVPA_CERS4  (Q3IWB1    ), GVPA_DOLFA  (P10397    ), 
GVPA_GEOUR  (A5G5E4    ), GVPA_HALMT  (P23761    ), GVPA_HALVU  (O33397    ), 
GVPA_HALWD  (Q18JA1    ), GVPA_KORVE  (Q1INZ5    ), GVPA_MICAN  (B0JPK6    ), 
GVPA_MICBC  (P08412    ), GVPA_MICDP  (P07060    ), GVPA_MYCSJ  (A3PZ32    ), 
GVPA_MYCSK  (A1UFH1    ), GVPA_MYCSS  (Q1B9J2    ), GVPA_NOSP7  (B2J663    ), 
GVPA_NOSS1  (Q8XFU1    ), GVPA_PLAAG  (P0A3G0    ), GVPA_PLARU  (P0A3G1    ), 
GVPA_PSEGP  (P22453    ), GVPA_RHOS1  (A3PPT5    ), GVPA_RHOSK  (B9KU72    ), 
GVPA_SYNJA  (Q2JW39    ), GVPA_SYNJB  (Q2JKK1    ), GVPA_THIPN  (P80998    ), 
GVPB_BACME  (O68677    ), GVPJ1_HALSA (P24374    ), GVPJ2_HALSA (P33956    ), 
GVPJ_BACME  (O68669    ), GVPJ_HALMT  (Q02235    ), GVPJ_PSEGP  (Q9AKS3    ), 
GVPM1_HALSA (P24377    ), GVPM2_HALSI (P33957    ), GVPM_HALMT  (Q02238    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 5 sequences 

GVPJ1_STRCO (Q9ZC08    ), GVPJ2_STRCO (Q9RJA9    ), GVPJ_DOLFA  (P55147    ), 

GVPJ_NOSS1  (Q8YUT1    ), GVPS_BACME  (O68671    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

GVPA_DACSA  (Q9R5H8    )


				
	





View entry in original PROSITE format


View entry in raw text format (no links)


Direct ScanProsite submission