PROSITE logo

PROSITE entry PS00669


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] GAS_VESICLE_A_2
Accession [info] PS00669
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00207

Name and characterization of the entry

Description [info] Gas vesicles protein GVPa signature 2.
Pattern [info]
R-[LIVA](3)-A-[GS]-[LIVMFY]-x-[TK]-x(3)-[YFI]-[AG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 40 in 40 different sequences
Number of true positive hits 40 in 40 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.11 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
40 sequences

GVPA1_HALSA (P08958), GVPA1_PRIMG (O68680), GVPA1_STRCO (Q9ZC13), 
GVPA2_HALSA (P08959), GVPA2_PRIMG (O68677), GVPA2_STRCO (Q9RJB4), 
GVPA_ANCAQ  (Q9RH31), GVPA_BRASO  (A4YMQ7), GVPA_CERS1  (A3PPT5), 
GVPA_CERS4  (Q3IWB1), GVPA_CERSK  (B9KU72), GVPA_DOLFA  (P10397), 
GVPA_GEOUR  (A5G5E4), GVPA_HALMT  (P23761), GVPA_HALVU  (O33397), 
GVPA_HALWD  (Q18JA1), GVPA_KORVE  (Q1INZ5), GVPA_MICAN  (B0JPK6), 
GVPA_MICBC  (P08412), GVPA_MICDP  (P07060), GVPA_MYCSJ  (A3PZ32), 
GVPA_MYCSK  (A1UFH1), GVPA_MYCSS  (Q1B9J2), GVPA_NOSP7  (B2J663), 
GVPA_NOSS1  (Q8XFU1), GVPA_PLAAG  (P0A3G0), GVPA_PLARU  (P0A3G1), 
GVPA_PSEGP  (P22453), GVPA_STRX0  (A0A1Q5LR04), GVPA_SYNJA  (Q2JW39), 
GVPA_SYNJB  (Q2JKK1), GVPA_THIPN  (P80998), GVPJ1_HALSA (P24374), 
GVPJ2_HALSA (P33956), GVPJ_HALMT  (Q02235), GVPJ_PRIMG  (O68669), 
GVPJ_PSEGP  (Q9AKS3), GVPM1_HALSA (P24377), GVPM2_HALSA (P33957), 
GVPM_HALMT  (Q02238)
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

GVPA_SPICC  (P80997), GVPJ1_STRCO (Q9ZC08), GVPJ2_STRCO (Q9RJA9), 
GVPJ_DOLFA  (P55147), GVPJ_NOSS1  (Q8YUT1), GVPS_PRIMG  (O68671), 
GVPS_STRX0  (A0A1Q5LQW7)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

GVPA_DACSA  (Q9R5H8)

		
PDB
[Detailed view]
1 PDB

8GBS