PROSITE entry PS00669

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	GAS_VESICLE_A_2
Accession [info]	PS00669
Entry type [info]	PATTERN
Date [info]	01-JUN-1992 CREATED; 01-DEC-2004 DATA UPDATE; 27-MAR-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00207

Name and characterization of the entry

Description [info]	Gas vesicles protein GVPa signature 2.
Pattern [info]	R-[LIVA](3)-A-[GS]-[LIVMFY]-x-[TK]-x(3)-[YFI]-[AG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_02 which contains 571'282 sequence entries.

Total number of hits	40 in 40 different sequences
Number of true positive hits	40 in 40 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	7
Number of 'partial' sequences	1

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	85.11 %

Comments [info]

Taxonomic range [info]	Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	40 sequences GVPA1_HALSA (P08958), GVPA1_PRIMG (O68680), GVPA1_STRCO (Q9ZC13), GVPA2_HALSA (P08959), GVPA2_PRIMG (O68677), GVPA2_STRCO (Q9RJB4), GVPA_ANCAQ (Q9RH31), GVPA_BRASO (A4YMQ7), GVPA_CERS1 (A3PPT5), GVPA_CERS4 (Q3IWB1), GVPA_CERSK (B9KU72), GVPA_DOLFA (P10397), GVPA_GEOUR (A5G5E4), GVPA_HALMT (P23761), GVPA_HALVU (O33397), GVPA_HALWD (Q18JA1), GVPA_KORVE (Q1INZ5), GVPA_MICAN (B0JPK6), GVPA_MICBC (P08412), GVPA_MICDP (P07060), GVPA_MYCSJ (A3PZ32), GVPA_MYCSK (A1UFH1), GVPA_MYCSS (Q1B9J2), GVPA_NOSP7 (B2J663), GVPA_NOSS1 (Q8XFU1), GVPA_PLAAG (P0A3G0), GVPA_PLARU (P0A3G1), GVPA_PSEGP (P22453), GVPA_STRX0 (A0A1Q5LR04), GVPA_SYNJA (Q2JW39), GVPA_SYNJB (Q2JKK1), GVPA_THIPN (P80998), GVPJ1_HALSA (P24374), GVPJ2_HALSA (P33956), GVPJ_HALMT (Q02235), GVPJ_PRIMG (O68669), GVPJ_PSEGP (Q9AKS3), GVPM1_HALSA (P24377), GVPM2_HALSA (P33957), GVPM_HALMT (Q02238) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	7 sequences GVPA_SPICC (P80997), GVPJ1_STRCO (Q9ZC08), GVPJ2_STRCO (Q9RJA9), GVPJ_DOLFA (P55147), GVPJ_NOSS1 (Q8YUT1), GVPS_PRIMG (O68671), GVPS_STRX0 (A0A1Q5LQW7) » more
UniProtKB/Swiss-Prot 'Partial' sequences	1 sequence GVPA_DACSA (Q9R5H8)
PDB [Detailed view]	1 PDB 8GBS