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| Entry: PS00675 |
General information about the entry
| Entry name [info] | SIGMA54_INTERACT_1 |
| Accession [info] | PS00675 |
| Entry type [info] | PATTERN |
| Date [info] |
01-JUN-1992 CREATED;
01-NOV-1995 DATA UPDATE; 16-OCT-2019 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00579 |
Name and characterization of the entry
| Description [info] | Sigma-54 interaction domain ATP-binding region A signature. |
| Pattern [info] |
[LIVMFY](3)-x-G-[DEQ]-[STE]-G-[STAV]-G-K-x(2)-[LIVMFY]. |
Numerical results [info]
| Total number of hits | 381 in 381 different sequences |
| Number of true positive hits | 130 in 130 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 251 in 251 different sequences |
| Number of false negative sequences | 27 |
| Number of 'partial' sequences | 3 |
| Precision (true positives / (true positives + false positives)) | 34.12 % |
| Recall (true positives / (true positives + false negatives)) | 82.80 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
130 sequences
ACOR_CUPNH (P28614 ), ALGB_PSEAE (P23747 ), ALGB_PSEPK (Q88RJ6 ), ALGB_PSESM (Q88AQ2 ), ANFA_AZOVI (P12626 ), ATOC_ECOLI (Q06065 ), DCTD_PSEAE (Q9HU19 ), DCTD_RHILE (P10046 ), DCTD_RHIME (P13632 ), DHAR_CITFR (P45512 ), DHAR_ECOLI (P76016 ), FHLA_ECOLI (P19323 ), FHLA_SALTS (E1WAA4 ), FHLA_SALTY (P0CL46 ), FLBD_CAUVC (P17899 ), GLRR_ECOLI (P0AFU4 ), HOXA_BRADU (P31908 ), HOXA_CUPNH (P29267 ), HRPR_PSESY (P37930 ), HRPS_PSESH (P26316 ), HYFR_ECOLI (P71229 ), LIHY_GEOSE (O85057 ), LUXO_VIBC3 (O87455 ), MDN1_ARATH (A0A1P8AUY4), MDN1_DICDI (Q869L3 ), MOPR_ACIGI (Q43965 ), NIFA_AZOBR (P30667 ), NIFA_AZOC5 (P09133 ), NIFA_AZOLI (P54929 ), NIFA_AZOVI (P09570 ), NIFA_BRADU (P05407 ), NIFA_ENTAG (P54930 ), NIFA_HERSE (P27713 ), NIFA_KLEOX (P56266 ), NIFA_KLEPN (P03027 ), NIFA_RHIEC (P54931 ), NIFA_RHILE (P09828 ), NIFA_RHILT (P24426 ), NIFA_RHIME (P03028 ), NIFA_RHOCA (P0CY94 ), NIFA_RHOCB (D5ARW9 ), NIFA_SINFN (Q53206 ), NORR1_CUPNH (Q9K4V0 ), NORR2_CUPNH (Q9K4U8 ), NORR_AERHH (A0KEJ0 ), NORR_AERS4 (A4STH5 ), NORR_ALIF1 (Q5E3W8 ), NORR_CITK8 (A8ANR6 ), NORR_ECO24 (A7ZQD8 ), NORR_ECO27 (B7UHC1 ), NORR_ECO45 (B7MKH8 ), NORR_ECO55 (B7LEC0 ), NORR_ECO57 (Q8X854 ), NORR_ECO5E (B5Z370 ), NORR_ECO7I (B7NSI9 ), NORR_ECO81 (B7MZ04 ), NORR_ECO8A (B7M9E6 ), NORR_ECOBW (C4ZYV4 ), NORR_ECODH (B1XCN6 ), NORR_ECOHS (A8A3I6 ), NORR_ECOK1 (A1AEP9 ), NORR_ECOL5 (Q0TEH1 ), NORR_ECOL6 (Q8FEN6 ), NORR_ECOLC (B1IUX0 ), NORR_ECOLI (P37013 ), NORR_ECOLU (B7N6T9 ), NORR_ECOSE (B6I695 ), NORR_ECOSM (B1LQ27 ), NORR_ECOUT (Q1R7Z1 ), NORR_ENT38 (A4WDR5 ), NORR_ESCF3 (B7LW25 ), NORR_KLEP3 (B5XVA2 ), NORR_KLEP7 (A6TCX4 ), NORR_PECAS (Q6D8R9 ), NORR_SALA4 (B5F363 ), NORR_SALAR (A9MFX7 ), NORR_SALCH (Q57KT4 ), NORR_SALDC (B5FSZ0 ), NORR_SALEP (B5QV88 ), NORR_SALG2 (B5RDG4 ), NORR_SALHS (B4TF23 ), NORR_SALNS (B4T3B0 ), NORR_SALPA (Q5PF20 ), NORR_SALPB (A9N0D7 ), NORR_SALPC (C0PWN2 ), NORR_SALSV (B4TT16 ), NORR_SALTI (Q8Z4C6 ), NORR_SALTY (Q8ZMJ8 ), NORR_SERP5 (A8GG93 ), NORR_SHIBS (Q31X73 ), NORR_SHIDS (Q32CL9 ), NORR_SHIF8 (Q0T1D4 ), NORR_SHIFL (P59402 ), NORR_SHISS (Q3YYF5 ), NORR_VIBVU (Q8D4F9 ), NORR_VIBVY (Q7MFY9 ), NTRC_AZOC5 (Q04848 ), NTRC_BRASR (P10576 ), NTRC_ECO57 (P0AFB9 ), NTRC_ECOLI (P0AFB8 ), NTRC_KLEPN (P03029 ), NTRC_PROHU (P28787 ), NTRC_RHIME (P10577 ), NTRC_RHOCB (P09432 ), NTRC_SALTY (P41789 ), PILR_PSEAE (Q00934 ), QSEF_ECO57 (P0AFU5 ), RAC2A_ARATH (O49841 ), RAC2B_ARATH (Q9SF92 ), ROCR_BACSU (P38022 ), SFNR_PSEPF (Q3K999 ), SFNR_PSEPU (Q845S7 ), SHS1_CANAL (Q59VX8 ), STC_CLOBE (P26047 ), TYRR_ECOLI (P07604 ), TYRR_ENTAG (Q9ZIB7 ), TYRR_HAEIN (P44694 ), TYRR_SALTI (P0A2D8 ), TYRR_SALTY (P0A2D7 ), VNFA_AZOVI (P12627 ), WTSA_PANSE (P36219 ), XYLR_PSEPU (P06519 ), YGEV_ECOLI (Q46802 ), YHYA_PSESN (Q01265 ), YQIR_BACSU (P54529 ), ZRAR_ECO57 (Q8X613 ), ZRAR_ECOLI (P14375 ), ZRAR_KLEOX (Q9APD9 ), ZRAR_SALTI (Q8Z333 ), ZRAR_SALTY (P25852 )» more
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| UniProtKB/Swiss-Prot False negative sequences |
27 sequences
ACOR_BACSU (O31551 ), DGAR_SALT1 (D0ZLR9 ), HRPS_PSESY (P37931 ), HUPR_RHOCA (P26408 ), LEVR_BACSU (P23914 ), LUXO_VIBCB (A7MVC2 ), LUXO_VIBCH (Q9KT84 ), LUXO_VIBHA (P0C5S5 ), LUXO_VIBPA (Q87MX7 ), LUXO_VIBVU (Q8CWJ5 ), MIMR_MYCGD (G3XGC1 ), MIMR_MYCS2 (A0QTU7 ), NTRC_AZOBR (P45671 ), NTRXL_RICBR (Q1RJS1 ), NTRXL_RICCN (Q92HC2 ), NTRXL_RICFE (Q4UL27 ), NTRXL_RICPR (Q9ZCY9 ), NTRXL_RICTY (Q68WH4 ), NTRX_AZOC5 (Q04849 ), PGTA_SALTY (P06184 ), PRPR_ECOLI (P77743 ), PRPR_SALTY (P74839 ), PSPF_ECOLI (P37344 ), RTCR_ECOLI (P38035 ), TYRR_CITBR (O54426 ), Y4PA_SINFN (P55610 ), YPLP_BACSU (P54156 )» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
NIFA_AZOCH (P56269 ), NTRC_VIBAL (P19905 ), YFHA_KLEOX (P21710 ) |
| UniProtKB/Swiss-Prot False positive sequences |
251 sequences
DNAA_TROW8 (Q83NZ5 ), DNAA_TROWT (Q83N52 ), GEM1_KLULA (Q6CY37 ), GEM1_YARLI (Q6C2J1 ), GEM1_YEAST (P39722 ), HPRK2_OCEIH (Q8EL04 ), HPRK_NITEU (Q82Y30 ), HPRK_UREPA (Q9PR69 ), ISTB_BACFR (Q64NF1 ), LIIP1_ARATH (Q9C5J9 ), LIIP2_ARATH (F4KFD8 ), MDN1_YEAST (Q12019 ), PEZT_STRPN (Q97QZ1 ), PHNC2_HALWD (Q18H36 ), PHNC_HALSA (Q9HNI8 ), PTLH_BORBR (Q7WDT5 ), PTLH_BORPA (Q7W2T7 ), PTLH_BORPE (Q7VSX3 ), QKGA_DICDI (Q8SSS9 ), RAA1A_ARATH (P28185 ), RAA1B_ARATH (Q39222 ), RAA1C_ARATH (Q9FK68 ), RAA1D_ARATH (Q9SN35 ), RAA1E_ARATH (O49513 ), RAA1F_ARATH (Q9FJH0 ), RAA1G_ARATH (Q9LK99 ), RAA1H_ARATH (Q1PEX3 ), RAA1I_ARATH (Q9S810 ), RAA2A_ARATH (O04486 ), RAA2B_ARATH (Q9LNW1 ), RAA2C_ARATH (Q96283 ), RAA2D_ARATH (Q9FIF9 ), RAB10_CANLF (P24409 ), RAB10_CHICK (Q5ZIT5 ), RAB10_DIPOM (P22127 ), RAB10_HUMAN (P61026 ), RAB10_MOUSE (P61027 ), RAB10_PONAB (Q5R5U1 ), RAB10_RAT (P35281 ), RAB13_BOVIN (Q58DS5 ), RAB13_CANLF (F1PTE3 ), RAB13_DANRE (Q7T3A4 ), RAB13_HUMAN (P51153 ), RAB13_MESAU (Q5KTJ6 ), RAB13_MOUSE (Q9DD03 ), RAB13_RAT (P35286 ), RAB15_BOVIN (Q1RMR4 ), RAB15_HUMAN (P59190 ), RAB15_MOUSE (Q8K386 ), RAB15_RAT (P35289 ), RAB18_BOVIN (Q0IIG8 ), RAB18_CAEBR (P90726 ), RAB18_CAEEL (Q8MXS1 ), RAB18_CHICK (Q5ZLG1 ), RAB18_HUMAN (Q9NP72 ), RAB18_MOUSE (P35293 ), RAB18_PONAB (Q5R5H5 ), RAB18_RAT (Q5EB77 ), RAB1A_ARATH (O23561 ), RAB1A_CANLF (P62822 ), RAB1A_DICDI (P34139 ), RAB1A_HUMAN (P62820 ), RAB1A_LYMST (Q05974 ), RAB1A_MOUSE (P62821 ), RAB1A_PIG (Q52NJ2 ), RAB1A_RAT (Q6NYB7 ), RAB1B_ARATH (Q38922 ), RAB1B_BOVIN (Q2HJH2 ), RAB1B_DICDI (P34140 ), RAB1B_HUMAN (Q9H0U4 ), RAB1B_MACFA (Q4R8X3 ), RAB1B_MOUSE (Q9D1G1 ), RAB1B_PIG (Q06AU7 ), RAB1B_PONAB (Q5RE13 ), RAB1B_RAT (P10536 ), RAB1C_ARATH (P92963 ), RAB1C_DICDI (O76173 ), RAB1C_HUMAN (Q92928 ), RAB1D_DICDI (Q54NU2 ), RAB1_DIPOM (P22125 ), RAB1_THEAN (Q4UB16 ), RAB1_THEPA (Q9TVU5 ), RAB25_BOVIN (Q58DW6 ), RAB25_CANLF (E2RQ15 ), RAB25_HUMAN (P57735 ), RAB25_MOUSE (Q9WTL2 ), RAB25_RABIT (P46629 ), RAB26_BOVIN (Q29RR0 ), RAB26_HUMAN (Q9ULW5 ), RAB26_MOUSE (Q504M8 ), RAB26_RAT (P51156 ), RAB2A_CANLF (P61105 ), RAB2A_CHICK (Q90965 ), RAB2A_DICDI (P36409 ), RAB2A_HUMAN (P61019 ), RAB2A_MACFA (Q4R4X6 ), RAB2A_MAIZE (P49103 ), RAB2A_MOUSE (P53994 ), RAB2A_PONAB (Q5R6B6 ), RAB2A_RABIT (Q01971 ), RAB2A_RAT (P05712 ), RAB2B_HUMAN (Q8WUD1 ), RAB2B_MAIZE (P49104 ), RAB2B_MOUSE (P59279 ), RAB2_LYMST (Q05975 ), RAB35_HUMAN (Q15286 ), RAB35_MOUSE (Q6PHN9 ), RAB35_RAT (Q5U316 ), RAB37_HUMAN (Q96AX2 ), RAB37_MOUSE (Q9JKM7 ), RAB7A_BOVIN (Q3T0F5 ), RAB7A_CANLF (P18067 ), RAB7A_DICDI (P36411 ), RAB7A_HUMAN (P51149 ), RAB7A_MOUSE (P51150 ), RAB7A_PAROT (Q95UJ0 ), RAB7A_PONAB (Q5R9Y4 ), RAB7A_RABIT (O97572 ), RAB7A_RAT (P09527 ), RAB7B_PAROT (Q6DUB4 ), RAB7_CENCI (Q40787 ), RAB7_GOSHI (Q9XER8 ), RAB7_MESCR (P93267 ), RAB7_NEUCR (Q9C2L8 ), RAB7_PEA (P31022 ), RAB7_PRUAR (O24461 ), RAB7_SOYBN (Q43463 ), RAB7_VIGAC (Q41640 ), RAB8A_BOVIN (A4FV54 ), RAB8A_CANLF (P61007 ), RAB8A_DICDI (P20790 ), RAB8A_HUMAN (P61006 ), RAB8A_MACFA (Q4R5P1 ), RAB8A_MOUSE (P55258 ), RAB8A_PONAB (Q5R4A3 ), RAB8A_RAT (P35280 ), RAB8B_BOVIN (Q2HJI8 ), RAB8B_DICDI (P20791 ), RAB8B_HUMAN (Q92930 ), RAB8B_MOUSE (P61028 ), RAB8B_PONAB (Q5REC9 ), RAB8B_RAT (P70550 ), RAB8_DIPOM (P22128 ), RABA_DICDI (P34141 ), RABC1_ARATH (O23657 ), RABC_DICDI (P34143 ), RABF1_ARATH (Q9CB01 ), RABF1_DICDI (Q558I0 ), RABG1_ARATH (Q948K6 ), RABG2_ARATH (Q9SJ11 ), RABL3_BOVIN (Q32LJ6 ), RABL3_CHICK (Q5ZKR4 ), RABL3_DANRE (Q6TNS7 ), RABL3_HUMAN (Q5HYI8 ), RABL3_MOUSE (Q9D4V7 ), RABL3_XENLA (Q6GPS4 ), RABL3_XENTR (A4IHM6 ), RAD2A_ARATH (P28188 ), RAD2B_ARATH (Q9FPJ4 ), RAD2C_ARATH (Q9SEH3 ), RAE1A_ARATH (O24466 ), RAE1C_ARATH (P28186 ), RAE1D_ARATH (Q9LZD4 ), RAE1E_ARATH (Q9SF91 ), RAG3A_ARATH (Q948K8 ), RAG3B_ARATH (O04157 ), RAG3C_ARATH (Q9LW76 ), RAG3D_ARATH (Q9C820 ), RAG3E_ARATH (Q9XI98 ), RAG3F_ARATH (Q9LS94 ), RB11A_BOVIN (Q2TA29 ), RB11A_CAEEL (O01803 ), RB11A_CANLF (P62490 ), RB11A_CHICK (Q5ZJN2 ), RB11A_DICDI (P36412 ), RB11A_HUMAN (P62491 ), RB11A_MOUSE (P62492 ), RB11A_PIG (Q52NJ1 ), RB11A_PONAB (Q5R9M7 ), RB11A_RABIT (P62493 ), RB11A_RAT (P62494 ), RB11A_TOBAC (Q40523 ), RB11B_BOVIN (Q3MHP2 ), RB11B_DICDI (Q54KM9 ), RB11B_DIPOM (P22129 ), RB11B_HUMAN (Q15907 ), RB11B_MOUSE (P46638 ), RB11B_RAT (O35509 ), RB11B_TOBAC (Q40521 ), RB11C_LOTJA (Q40193 ), RB11D_LOTJA (Q40194 ), RB11E_LOTJA (Q40195 ), RB18A_LYMST (Q05976 ), RB18B_DANRE (Q6DHC1 ), RB1BV_BETVU (Q39433 ), RB2BV_BETVU (Q39434 ), REM2_HUMAN (Q8IYK8 ), REM2_MOUSE (Q8VEL9 ), REM2_RAT (Q9WTY2 ), RIC1_ORYSJ (P40392 ), RIC2_ORYSJ (P40393 ), RLGP2_ORYSJ (Q40723 ), ROC11_DICDI (Q6XHA5 ), ROCO4_DICDI (Q6XHB2 ), RSGA_STAAC (Q9KX08 ), RSGA_STAAM (P67681 ), RSGA_STAAN (P67682 ), RSGA_STAAR (Q6GHL4 ), RSGA_STAAS (Q6G9Z2 ), RSGA_STAAW (P67683 ), RSGA_STAEQ (Q5HPX0 ), RSGA_STAES (Q8CSV8 ), RSGA_STAHJ (Q4L5S2 ), RYL1_YARLI (P41924 ), SBCC_LACLA (Q9CFZ0 ), SEC4_CANAL (P0CY31 ), SEC4_CANAW (C4YL11 ), SEC4_CANAX (P0CY30 ), SEC4_CANGA (O42819 ), SEC4_YEAST (P07560 ), SPN1_SCHPO (O36023 ), SUNT_BACSU (P68579 ), SUNT_BPSPB (P68580 ), V3_SPTNK (B4YNE3 ), VIRBB_BRUA2 (Q2YJ82 ), VIRBB_BRUAB (P0C534 ), VIRBB_BRUME (Q8YDY9 ), VIRBB_BRUSU (Q8FXK7 ), Y6523_BACAN (Q6F054 ), Y7407_DICDI (Q54KD0 ), Y8923_DICDI (Q54FZ8 ), YPT1_NEUCR (P33723 ), YPT1_PHYIN (Q01890 ), YPT1_SCHPO (P11620 ), YPT2_SCHPO (P17609 ), YPT31_YEAST (P38555 ), YPT32_YEAST (P51996 ), YPT3_NICPL (Q01111 ), YPT71_SCHPO (Q9HDY0 ), YPT7_SCHPO (O94655 ), YPT7_YEAST (P32939 ), YPTC1_CHLRE (Q39571 ), YPTC4_CHLRE (Q39570 ), YPTC5_CHLRE (Q39573 ), YPTC6_CHLRE (Q39572 ), YPTM2_MAIZE (Q05737 ), YPTV1_VOLCA (P31584 ), YPTV2_VOLCA (P36861 ), YPTV3_VOLCA (P36862 ), YPTV4_VOLCA (P36863 ), YPTV5_VOLCA (P36864 )» more |
| PDB [Detailed view] |
1 PDB
1OJL |
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