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PROSITE entry PS00676


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General information about the entry

Entry name [info] SIGMA54_INTERACT_2
Accession [info] PS00676
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain ATP-binding region B signature.
Pattern [info] 
[GS]-x-[LIVMFA]-x(2)-[AS]-[DNEQASH]-[GNEKT]-G-[STIM]-[LIVMFY](3)-[DE]-
[EK]-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 143 in 143 different sequences
Number of true positive hits 138 in 138 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 19
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 96.50 %
Recall (true positives / (true positives + false negatives)) 87.90 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 138 sequences 

ACOR_CUPNH  (P28614), ALGB_PSEAE  (P23747), ALGB_PSEPK  (Q88RJ6), 

ALGB_PSESM  (Q88AQ2), ANFA_AZOVI  (P12626), ATOC_ECOLI  (Q06065), 
DCTD_PSEAE  (Q9HU19), DCTD_RHILE  (P10046), DCTD_RHIME  (P13632), 
DHAR_CITFR  (P45512), DHAR_ECOLI  (P76016), FLBD_CAUVC  (P17899), 
FLEQ_PSEAE  (G3XCV0), FLER_PSEAE  (Q9I4N3), FLGR_HELPY  (O25408), 
GLRR_ECOLI  (P0AFU4), HOXA_BRADU  (P31908), HOXA_CUPNH  (P29267), 
HRPR_PSESY  (P37930), HRPS_PSESH  (P26316), HRPS_PSESY  (P37931), 
HYFR_ECOLI  (P71229), LEVR_BACSU  (P23914), LIHY_GEOSE  (O85057), 
LUXO_VIBC1  (A7MVC2), LUXO_VIBC3  (O87455), LUXO_VIBCH  (Q9KT84), 
LUXO_VIBHA  (P0C5S5), LUXO_VIBPA  (Q87MX7), LUXO_VIBVU  (Q8CWJ5), 
LUXO_VIBVY  (Q7MM78), MOPR_ACIGI  (Q43965), NIFA_AZOBR  (P30667), 
NIFA_AZOC5  (P09133), NIFA_AZOLI  (P54929), NIFA_AZOVI  (P09570), 
NIFA_BRADU  (P05407), NIFA_ENTAG  (P54930), NIFA_HERSE  (P27713), 
NIFA_KLEOX  (P56266), NIFA_KLEPN  (P03027), NIFA_RHIEC  (P54931), 
NIFA_RHILE  (P09828), NIFA_RHILT  (P24426), NIFA_RHIME  (P03028), 
NIFA_RHOCA  (P0CY94), NIFA_RHOCB  (D5ARW9), NIFA_SINFN  (Q53206), 
NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), NORR_AERS4  (A4STH5), 
NORR_ALIF1  (Q5E3W8), NORR_CITK8  (A8ANR6), NORR_ECO24  (A7ZQD8), 
NORR_ECO27  (B7UHC1), NORR_ECO45  (B7MKH8), NORR_ECO55  (B7LEC0), 
NORR_ECO57  (Q8X854), NORR_ECO5E  (B5Z370), NORR_ECO7I  (B7NSI9), 
NORR_ECO81  (B7MZ04), NORR_ECO8A  (B7M9E6), NORR_ECOBW  (C4ZYV4), 
NORR_ECODH  (B1XCN6), NORR_ECOHS  (A8A3I6), NORR_ECOK1  (A1AEP9), 
NORR_ECOL5  (Q0TEH1), NORR_ECOL6  (Q8FEN6), NORR_ECOLC  (B1IUX0), 
NORR_ECOLI  (P37013), NORR_ECOLU  (B7N6T9), NORR_ECOSE  (B6I695), 
NORR_ECOSM  (B1LQ27), NORR_ECOUT  (Q1R7Z1), NORR_ENT38  (A4WDR5), 
NORR_ESCF3  (B7LW25), NORR_KLEP3  (B5XVA2), NORR_KLEP7  (A6TCX4), 
NORR_PECAS  (Q6D8R9), NORR_SALA4  (B5F363), NORR_SALAR  (A9MFX7), 
NORR_SALCH  (Q57KT4), NORR_SALDC  (B5FSZ0), NORR_SALEP  (B5QV88), 
NORR_SALG2  (B5RDG4), NORR_SALHS  (B4TF23), NORR_SALNS  (B4T3B0), 
NORR_SALPA  (Q5PF20), NORR_SALPB  (A9N0D7), NORR_SALPC  (C0PWN2), 
NORR_SALSV  (B4TT16), NORR_SALTI  (Q8Z4C6), NORR_SALTY  (Q8ZMJ8), 
NORR_SERP5  (A8GG93), NORR_SHIBS  (Q31X73), NORR_SHIDS  (Q32CL9), 
NORR_SHIF8  (Q0T1D4), NORR_SHIFL  (P59402), NORR_SHISS  (Q3YYF5), 
NORR_VIBVU  (Q8D4F9), NORR_VIBVY  (Q7MFY9), NTRC_AZOBR  (P45671), 
NTRC_AZOC5  (Q04848), NTRC_BRASR  (P10576), NTRC_ECO57  (P0AFB9), 
NTRC_ECOLI  (P0AFB8), NTRC_KLEPN  (P03029), NTRC_PROHU  (P28787), 
NTRC_RHIME  (P10577), NTRC_SALTY  (P41789), NTRX_AZOC5  (Q04849), 
PILR_PSEAE  (Q00934), PRPR_ECOLI  (P77743), PRPR_SALTY  (P74839), 
PSPF_ECOLI  (P37344), QSEF_ECO57  (P0AFU5), ROCR_BACSU  (P38022), 
RTCR_ECOLI  (P38035), SFNR_PSEPF  (Q3K999), SFNR_PSEPU  (Q845S7), 
STC_CLOBE   (P26047), TYRR_CITBR  (O54426), TYRR_ECOLI  (P07604), 
TYRR_ENTAG  (Q9ZIB7), TYRR_SALTI  (P0A2D8), TYRR_SALTY  (P0A2D7), 
UACR_ECOLI  (Q46802), VASH_VIBCH  (Q9KN48), VNFA_AZOVI  (P12627), 
WTSA_PANSE  (P36219), XYLR_PSEPU  (P06519), YHYA_PSESN  (Q01265), 
YQIR_BACSU  (P54529), ZRAR_ECO57  (Q8X613), ZRAR_ECOLI  (P14375), 
ZRAR_KLEOX  (Q9APD9), ZRAR_SALTI  (Q8Z333), ZRAR_SALTY  (P25852)
» more

UniProtKB/Swiss-Prot
False negative sequences		 19 sequences 

ACOR_BACSU  (O31551), DGAR_SALT1  (D0ZLR9), FHLA_ECOLI  (P19323), 

FHLA_SALTS  (E1WAA4), FHLA_SALTY  (P0CL46), HUPR_RHOCA  (P26408), 
MIMR_MYCGD  (G3XGC1), MIMR_MYCS2  (A0QTU7), NORR_AERHH  (A0KEJ0), 
NTRC_RHOCB  (P09432), NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), 
NTRXL_RICFE (Q4UL27), NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), 
PGTA_SALTY  (P06184), TYRR_HAEIN  (P44694), Y4PA_SINFN  (P55610), 
YPLP_BACSU  (P54156)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 3 sequences 

NIFA_AZOCH  (P56269), NTRC_VIBAL  (P19905), YFHA_KLEOX  (P21710)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			5 sequences
			


			
CLPX_BORBU  (O51557), CLPX_BORGP  (Q660R1), CLPX_CAMJE  (Q9PIM0), 

			
CLPX_HELHP  (Q7VGY5), YIFB_SALTY  (P57015)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			20 PDB
			


			1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2C9C; 2VII; 5EXP; 5EXS; 5EXT; 5EXX; 
			
				5NSS; 6J7E; 6JDI; 6JDL; 7EJW; 7QV9; 8P53; 8PB9
			
			

			» more