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PROSITE entry PS00688


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General information about the entry

Entry name [info] SIGMA54_INTERACT_3
Accession [info] PS00688
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-JUN-1994 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain C-terminal part signature.
Pattern [info] 
[FYW]-P-[GS]-N-[LIVM]-R-[EQ]-L-x-[NHAT].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 142 in 142 different sequences
Number of true positive hits 142 in 142 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.61 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 142 sequences 

ACOR_BACSU  (O31551), ACOR_CUPNH  (P28614), ALGB_PSEAE  (P23747), 

ALGB_PSEPK  (Q88RJ6), ALGB_PSESM  (Q88AQ2), ANFA_AZOVI  (P12626), 
ATOC_ECOLI  (Q06065), DCTD_PSEAE  (Q9HU19), DCTD_RHILE  (P10046), 
DCTD_RHIME  (P13632), FHLA_ECOLI  (P19323), FHLA_SALTS  (E1WAA4), 
FHLA_SALTY  (P0CL46), FLBD_CAUVC  (P17899), FLEQ_PSEAE  (G3XCV0), 
FLER_PSEAE  (Q9I4N3), GLRR_ECOLI  (P0AFU4), HOXA_BRADU  (P31908), 
HOXA_CUPNH  (P29267), HRPS_PSESH  (P26316), HRPS_PSESY  (P37931), 
HUPR_RHOCA  (P26408), HYFR_ECOLI  (P71229), LIHY_GEOSE  (O85057), 
LUXO_VIBC1  (A7MVC2), LUXO_VIBC3  (O87455), LUXO_VIBCH  (Q9KT84), 
LUXO_VIBHA  (P0C5S5), LUXO_VIBPA  (Q87MX7), LUXO_VIBVU  (Q8CWJ5), 
LUXO_VIBVY  (Q7MM78), MOPR_ACIGI  (Q43965), NIFA_AZOBR  (P30667), 
NIFA_AZOC5  (P09133), NIFA_AZOLI  (P54929), NIFA_AZOVI  (P09570), 
NIFA_BRADU  (P05407), NIFA_ENTAG  (P54930), NIFA_HERSE  (P27713), 
NIFA_KLEOX  (P56266), NIFA_KLEPN  (P03027), NIFA_RHIEC  (P54931), 
NIFA_RHILE  (P09828), NIFA_RHILT  (P24426), NIFA_RHIME  (P03028), 
NIFA_RHOCA  (P0CY94), NIFA_RHOCB  (D5ARW9), NIFA_SINFN  (Q53206), 
NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), NORR_AERHH  (A0KEJ0), 
NORR_AERS4  (A4STH5), NORR_ALIF1  (Q5E3W8), NORR_CITK8  (A8ANR6), 
NORR_ECO24  (A7ZQD8), NORR_ECO27  (B7UHC1), NORR_ECO45  (B7MKH8), 
NORR_ECO55  (B7LEC0), NORR_ECO57  (Q8X854), NORR_ECO5E  (B5Z370), 
NORR_ECO7I  (B7NSI9), NORR_ECO81  (B7MZ04), NORR_ECO8A  (B7M9E6), 
NORR_ECOBW  (C4ZYV4), NORR_ECODH  (B1XCN6), NORR_ECOHS  (A8A3I6), 
NORR_ECOK1  (A1AEP9), NORR_ECOL5  (Q0TEH1), NORR_ECOL6  (Q8FEN6), 
NORR_ECOLC  (B1IUX0), NORR_ECOLI  (P37013), NORR_ECOLU  (B7N6T9), 
NORR_ECOSE  (B6I695), NORR_ECOSM  (B1LQ27), NORR_ECOUT  (Q1R7Z1), 
NORR_ENT38  (A4WDR5), NORR_ESCF3  (B7LW25), NORR_KLEP3  (B5XVA2), 
NORR_KLEP7  (A6TCX4), NORR_PECAS  (Q6D8R9), NORR_SALA4  (B5F363), 
NORR_SALAR  (A9MFX7), NORR_SALCH  (Q57KT4), NORR_SALDC  (B5FSZ0), 
NORR_SALEP  (B5QV88), NORR_SALG2  (B5RDG4), NORR_SALHS  (B4TF23), 
NORR_SALNS  (B4T3B0), NORR_SALPA  (Q5PF20), NORR_SALPB  (A9N0D7), 
NORR_SALPC  (C0PWN2), NORR_SALSV  (B4TT16), NORR_SALTI  (Q8Z4C6), 
NORR_SALTY  (Q8ZMJ8), NORR_SERP5  (A8GG93), NORR_SHIBS  (Q31X73), 
NORR_SHIDS  (Q32CL9), NORR_SHIF8  (Q0T1D4), NORR_SHIFL  (P59402), 
NORR_SHISS  (Q3YYF5), NORR_VIBVU  (Q8D4F9), NORR_VIBVY  (Q7MFY9), 
NTRC_AZOBR  (P45671), NTRC_AZOC5  (Q04848), NTRC_BRASR  (P10576), 
NTRC_ECO57  (P0AFB9), NTRC_ECOLI  (P0AFB8), NTRC_KLEPN  (P03029), 
NTRC_RHIME  (P10577), NTRC_RHOCB  (P09432), NTRC_SALTY  (P41789), 
NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), NTRXL_RICFE (Q4UL27), 
NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), NTRX_AZOC5  (Q04849), 
PGTA_SALTY  (P06184), PILR_PSEAE  (Q00934), PRPR_ECOLI  (P77743), 
PRPR_SALTY  (P74839), PSPF_ECOLI  (P37344), QSEF_ECO57  (P0AFU5), 
ROCR_BACSU  (P38022), SFNR_PSEPF  (Q3K999), SFNR_PSEPU  (Q845S7), 
STC_CLOBE   (P26047), TYRR_ECOLI  (P07604), TYRR_ENTAG  (Q9ZIB7), 
TYRR_SALTI  (P0A2D8), TYRR_SALTY  (P0A2D7), UACR_ECOLI  (Q46802), 
VASH_VIBCH  (Q9KN48), VNFA_AZOVI  (P12627), WTSA_PANSE  (P36219), 
XYLR_PSEPU  (P06519), YQIR_BACSU  (P54529), ZRAR_ECO57  (Q8X613), 
ZRAR_ECOLI  (P14375), ZRAR_KLEOX  (Q9APD9), ZRAR_SALTI  (Q8Z333), 
ZRAR_SALTY  (P25852)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

DGAR_SALT1  (D0ZLR9), DHAR_CITFR  (P45512), DHAR_ECOLI  (P76016), 

HRPR_PSESY  (P37930), LEVR_BACSU  (P23914), MIMR_MYCGD  (G3XGC1), 
MIMR_MYCS2  (A0QTU7), NTRC_PROHU  (P28787), RTCR_ECOLI  (P38035), 
TYRR_CITBR  (O54426), TYRR_HAEIN  (P44694), Y4PA_SINFN  (P55610), 
YPLP_BACSU  (P54156)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 4 sequences 

NIFA_AZOCH  (P56269), NTRC_VIBAL  (P19905), YFHA_KLEOX  (P21710), 

YHYA_PSESN  (Q01265)
» more

PDB
[Detailed view]		 22 PDB

1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2VII; 4QNM; 4QNR; 4QOS; 5EXP; 5EXS; 5EXT; 5EXX; 5NSS; 6J7E; 6JDI; 6JDL; 7EJW; 7QV9; 8P53; 8PB9
» more