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Entry: PS00688 |
Entry name [info] | SIGMA54_INTERACT_3 |
Accession [info] | PS00688 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-JUN-1994 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00579 |
Description [info] | Sigma-54 interaction domain C-terminal part signature. |
Pattern [info] |
[FYW]-P-[GS]-N-[LIVM]-R-[EQ]-L-x-[NHAT]. |
Total number of hits | 142 in 142 different sequences |
Number of true positive hits | 142 in 142 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 13 |
Number of 'partial' sequences | 4 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 91.61 % |
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
142 sequences
ACOR_BACSU (O31551 ), ACOR_CUPNH (P28614 ), ALGB_PSEAE (P23747 ), ALGB_PSEPK (Q88RJ6 ), ALGB_PSESM (Q88AQ2 ), ANFA_AZOVI (P12626 ), ATOC_ECOLI (Q06065 ), DCTD_PSEAE (Q9HU19 ), DCTD_RHILE (P10046 ), DCTD_RHIME (P13632 ), FHLA_ECOLI (P19323 ), FHLA_SALTS (E1WAA4 ), FHLA_SALTY (P0CL46 ), FLBD_CAUVC (P17899 ), FLEQ_PSEAE (G3XCV0 ), FLER_PSEAE (Q9I4N3 ), GLRR_ECOLI (P0AFU4 ), HOXA_BRADU (P31908 ), HOXA_CUPNH (P29267 ), HRPS_PSESH (P26316 ), HRPS_PSESY (P37931 ), HUPR_RHOCA (P26408 ), HYFR_ECOLI (P71229 ), LIHY_GEOSE (O85057 ), LUXO_VIBC3 (O87455 ), LUXO_VIBCB (A7MVC2 ), LUXO_VIBCH (Q9KT84 ), LUXO_VIBHA (P0C5S5 ), LUXO_VIBPA (Q87MX7 ), LUXO_VIBVU (Q8CWJ5 ), LUXO_VIBVY (Q7MM78 ), MOPR_ACIGI (Q43965 ), NIFA_AZOBR (P30667 ), NIFA_AZOC5 (P09133 ), NIFA_AZOLI (P54929 ), NIFA_AZOVI (P09570 ), NIFA_BRADU (P05407 ), NIFA_ENTAG (P54930 ), NIFA_HERSE (P27713 ), NIFA_KLEOX (P56266 ), NIFA_KLEPN (P03027 ), NIFA_RHIEC (P54931 ), NIFA_RHILE (P09828 ), NIFA_RHILT (P24426 ), NIFA_RHIME (P03028 ), NIFA_RHOCA (P0CY94 ), NIFA_RHOCB (D5ARW9 ), NIFA_SINFN (Q53206 ), NORR1_CUPNH (Q9K4V0 ), NORR2_CUPNH (Q9K4U8 ), NORR_AERHH (A0KEJ0 ), NORR_AERS4 (A4STH5 ), NORR_ALIF1 (Q5E3W8 ), NORR_CITK8 (A8ANR6 ), NORR_ECO24 (A7ZQD8 ), NORR_ECO27 (B7UHC1 ), NORR_ECO45 (B7MKH8 ), NORR_ECO55 (B7LEC0 ), NORR_ECO57 (Q8X854 ), NORR_ECO5E (B5Z370 ), NORR_ECO7I (B7NSI9 ), NORR_ECO81 (B7MZ04 ), NORR_ECO8A (B7M9E6 ), NORR_ECOBW (C4ZYV4 ), NORR_ECODH (B1XCN6 ), NORR_ECOHS (A8A3I6 ), NORR_ECOK1 (A1AEP9 ), NORR_ECOL5 (Q0TEH1 ), NORR_ECOL6 (Q8FEN6 ), NORR_ECOLC (B1IUX0 ), NORR_ECOLI (P37013 ), NORR_ECOLU (B7N6T9 ), NORR_ECOSE (B6I695 ), NORR_ECOSM (B1LQ27 ), NORR_ECOUT (Q1R7Z1 ), NORR_ENT38 (A4WDR5 ), NORR_ESCF3 (B7LW25 ), NORR_KLEP3 (B5XVA2 ), NORR_KLEP7 (A6TCX4 ), NORR_PECAS (Q6D8R9 ), NORR_SALA4 (B5F363 ), NORR_SALAR (A9MFX7 ), NORR_SALCH (Q57KT4 ), NORR_SALDC (B5FSZ0 ), NORR_SALEP (B5QV88 ), NORR_SALG2 (B5RDG4 ), NORR_SALHS (B4TF23 ), NORR_SALNS (B4T3B0 ), NORR_SALPA (Q5PF20 ), NORR_SALPB (A9N0D7 ), NORR_SALPC (C0PWN2 ), NORR_SALSV (B4TT16 ), NORR_SALTI (Q8Z4C6 ), NORR_SALTY (Q8ZMJ8 ), NORR_SERP5 (A8GG93 ), NORR_SHIBS (Q31X73 ), NORR_SHIDS (Q32CL9 ), NORR_SHIF8 (Q0T1D4 ), NORR_SHIFL (P59402 ), NORR_SHISS (Q3YYF5 ), NORR_VIBVU (Q8D4F9 ), NORR_VIBVY (Q7MFY9 ), NTRC_AZOBR (P45671 ), NTRC_AZOC5 (Q04848 ), NTRC_BRASR (P10576 ), NTRC_ECO57 (P0AFB9 ), NTRC_ECOLI (P0AFB8 ), NTRC_KLEPN (P03029 ), NTRC_RHIME (P10577 ), NTRC_RHOCB (P09432 ), NTRC_SALTY (P41789 ), NTRXL_RICBR (Q1RJS1 ), NTRXL_RICCN (Q92HC2 ), NTRXL_RICFE (Q4UL27 ), NTRXL_RICPR (Q9ZCY9 ), NTRXL_RICTY (Q68WH4 ), NTRX_AZOC5 (Q04849 ), PGTA_SALTY (P06184 ), PILR_PSEAE (Q00934 ), PRPR_ECOLI (P77743 ), PRPR_SALTY (P74839 ), PSPF_ECOLI (P37344 ), QSEF_ECO57 (P0AFU5 ), ROCR_BACSU (P38022 ), SFNR_PSEPF (Q3K999 ), SFNR_PSEPU (Q845S7 ), STC_CLOBE (P26047 ), TYRR_ECOLI (P07604 ), TYRR_ENTAG (Q9ZIB7 ), TYRR_SALTI (P0A2D8 ), TYRR_SALTY (P0A2D7 ), UACR_ECOLI (Q46802 ), VASH_VIBCH (Q9KN48 ), VNFA_AZOVI (P12627 ), WTSA_PANSE (P36219 ), XYLR_PSEPU (P06519 ), YQIR_BACSU (P54529 ), ZRAR_ECO57 (Q8X613 ), ZRAR_ECOLI (P14375 ), ZRAR_KLEOX (Q9APD9 ), ZRAR_SALTI (Q8Z333 ), ZRAR_SALTY (P25852 )» more
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UniProtKB/Swiss-Prot False negative sequences |
13 sequences
DGAR_SALT1 (D0ZLR9 ), DHAR_CITFR (P45512 ), DHAR_ECOLI (P76016 ), HRPR_PSESY (P37930 ), LEVR_BACSU (P23914 ), MIMR_MYCGD (G3XGC1 ), MIMR_MYCS2 (A0QTU7 ), NTRC_PROHU (P28787 ), RTCR_ECOLI (P38035 ), TYRR_CITBR (O54426 ), TYRR_HAEIN (P44694 ), Y4PA_SINFN (P55610 ), YPLP_BACSU (P54156 )» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
4 sequences
NIFA_AZOCH (P56269 ), NTRC_VIBAL (P19905 ), YFHA_KLEOX (P21710 ), YHYA_PSESN (Q01265 )» more |
PDB [Detailed view] |
18 PDB
1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2VII; 4QNM; 4QNR; 4QOS; 5EXP; 5EXS; 5EXT; 5EXX; 5NSS; 6J7E; 6JDI; 6JDL » more |