PROSITE logo

PROSITE entry PS00688


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] SIGMA54_INTERACT_3
Accession [info] PS00688
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-JUN-1994 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain C-terminal part signature.
Pattern [info]
[FYW]-P-[GS]-N-[LIVM]-R-[EQ]-L-x-[NHAT].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 142 in 142 different sequences
Number of true positive hits 142 in 142 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.61 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
142 sequences

ACOR_BACSU  (O31551), ACOR_CUPNH  (P28614), ALGB_PSEAE  (P23747), 
ALGB_PSEPK  (Q88RJ6), ALGB_PSESM  (Q88AQ2), ANFA_AZOVI  (P12626), 
ATOC_ECOLI  (Q06065), DCTD_PSEAE  (Q9HU19), DCTD_RHILE  (P10046), 
DCTD_RHIME  (P13632), FHLA_ECOLI  (P19323), FHLA_SALTS  (E1WAA4), 
FHLA_SALTY  (P0CL46), FLBD_CAUVC  (P17899), FLEQ_PSEAE  (G3XCV0), 
FLER_PSEAE  (Q9I4N3), GLRR_ECOLI  (P0AFU4), HOXA_BRADU  (P31908), 
HOXA_CUPNH  (P29267), HRPS_PSESH  (P26316), HRPS_PSESY  (P37931), 
HUPR_RHOCA  (P26408), HYFR_ECOLI  (P71229), LIHY_GEOSE  (O85057), 
LUXO_VIBC1  (A7MVC2), LUXO_VIBC3  (O87455), LUXO_VIBCH  (Q9KT84), 
LUXO_VIBHA  (P0C5S5), LUXO_VIBPA  (Q87MX7), LUXO_VIBVU  (Q8CWJ5), 
LUXO_VIBVY  (Q7MM78), MOPR_ACIGI  (Q43965), NIFA_AZOBR  (P30667), 
NIFA_AZOC5  (P09133), NIFA_AZOLI  (P54929), NIFA_AZOVI  (P09570), 
NIFA_BRADU  (P05407), NIFA_ENTAG  (P54930), NIFA_HERSE  (P27713), 
NIFA_KLEOX  (P56266), NIFA_KLEPN  (P03027), NIFA_RHIEC  (P54931), 
NIFA_RHILE  (P09828), NIFA_RHILT  (P24426), NIFA_RHIME  (P03028), 
NIFA_RHOCA  (P0CY94), NIFA_RHOCB  (D5ARW9), NIFA_SINFN  (Q53206), 
NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), NORR_AERHH  (A0KEJ0), 
NORR_AERS4  (A4STH5), NORR_ALIF1  (Q5E3W8), NORR_CITK8  (A8ANR6), 
NORR_ECO24  (A7ZQD8), NORR_ECO27  (B7UHC1), NORR_ECO45  (B7MKH8), 
NORR_ECO55  (B7LEC0), NORR_ECO57  (Q8X854), NORR_ECO5E  (B5Z370), 
NORR_ECO7I  (B7NSI9), NORR_ECO81  (B7MZ04), NORR_ECO8A  (B7M9E6), 
NORR_ECOBW  (C4ZYV4), NORR_ECODH  (B1XCN6), NORR_ECOHS  (A8A3I6), 
NORR_ECOK1  (A1AEP9), NORR_ECOL5  (Q0TEH1), NORR_ECOL6  (Q8FEN6), 
NORR_ECOLC  (B1IUX0), NORR_ECOLI  (P37013), NORR_ECOLU  (B7N6T9), 
NORR_ECOSE  (B6I695), NORR_ECOSM  (B1LQ27), NORR_ECOUT  (Q1R7Z1), 
NORR_ENT38  (A4WDR5), NORR_ESCF3  (B7LW25), NORR_KLEP3  (B5XVA2), 
NORR_KLEP7  (A6TCX4), NORR_PECAS  (Q6D8R9), NORR_SALA4  (B5F363), 
NORR_SALAR  (A9MFX7), NORR_SALCH  (Q57KT4), NORR_SALDC  (B5FSZ0), 
NORR_SALEP  (B5QV88), NORR_SALG2  (B5RDG4), NORR_SALHS  (B4TF23), 
NORR_SALNS  (B4T3B0), NORR_SALPA  (Q5PF20), NORR_SALPB  (A9N0D7), 
NORR_SALPC  (C0PWN2), NORR_SALSV  (B4TT16), NORR_SALTI  (Q8Z4C6), 
NORR_SALTY  (Q8ZMJ8), NORR_SERP5  (A8GG93), NORR_SHIBS  (Q31X73), 
NORR_SHIDS  (Q32CL9), NORR_SHIF8  (Q0T1D4), NORR_SHIFL  (P59402), 
NORR_SHISS  (Q3YYF5), NORR_VIBVU  (Q8D4F9), NORR_VIBVY  (Q7MFY9), 
NTRC_AZOBR  (P45671), NTRC_AZOC5  (Q04848), NTRC_BRASR  (P10576), 
NTRC_ECO57  (P0AFB9), NTRC_ECOLI  (P0AFB8), NTRC_KLEPN  (P03029), 
NTRC_RHIME  (P10577), NTRC_RHOCB  (P09432), NTRC_SALTY  (P41789), 
NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), NTRXL_RICFE (Q4UL27), 
NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), NTRX_AZOC5  (Q04849), 
PGTA_SALTY  (P06184), PILR_PSEAE  (Q00934), PRPR_ECOLI  (P77743), 
PRPR_SALTY  (P74839), PSPF_ECOLI  (P37344), QSEF_ECO57  (P0AFU5), 
ROCR_BACSU  (P38022), SFNR_PSEPF  (Q3K999), SFNR_PSEPU  (Q845S7), 
STC_CLOBE   (P26047), TYRR_ECOLI  (P07604), TYRR_ENTAG  (Q9ZIB7), 
TYRR_SALTI  (P0A2D8), TYRR_SALTY  (P0A2D7), UACR_ECOLI  (Q46802), 
VASH_VIBCH  (Q9KN48), VNFA_AZOVI  (P12627), WTSA_PANSE  (P36219), 
XYLR_PSEPU  (P06519), YQIR_BACSU  (P54529), ZRAR_ECO57  (Q8X613), 
ZRAR_ECOLI  (P14375), ZRAR_KLEOX  (Q9APD9), ZRAR_SALTI  (Q8Z333), 
ZRAR_SALTY  (P25852)
» more

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

DGAR_SALT1  (D0ZLR9), DHAR_CITFR  (P45512), DHAR_ECOLI  (P76016), 
HRPR_PSESY  (P37930), LEVR_BACSU  (P23914), MIMR_MYCGD  (G3XGC1), 
MIMR_MYCS2  (A0QTU7), NTRC_PROHU  (P28787), RTCR_ECOLI  (P38035), 
TYRR_CITBR  (O54426), TYRR_HAEIN  (P44694), Y4PA_SINFN  (P55610), 
YPLP_BACSU  (P54156)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

NIFA_AZOCH  (P56269), NTRC_VIBAL  (P19905), YFHA_KLEOX  (P21710), 
YHYA_PSESN  (Q01265)
» more

PDB
[Detailed view]
22 PDB

1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2VII; 4QNM; 4QNR; 4QOS; 5EXP; 5EXS; 5EXT; 5EXX; 5NSS; 6J7E; 6JDI; 6JDL; 7EJW; 7QV9; 8P53; 8PB9
» more