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PROSITE entry PS00699


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General information about the entry

Entry name [info] NITROGENASE_1_1
Accession [info] PS00699
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-NOV-1995 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00085

Name and characterization of the entry

Description [info] Nitrogenases component 1 alpha and beta subunits signature 1.
Pattern [info] 
[LIVMFYH]-[LIVMFST]-H-[AG]-[AGSP]-[LIVMNQA]-[AG]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 87 in 87 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits 1
Number of false positive hits 7 in 7 different sequences
Number of false negative sequences 6
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 91.86 %
Recall (true positives / (true positives + false negatives)) 92.94 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] iron_sulfur(?) at position 8
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 79 sequences 

ANFD_AZOVI  (P16266), ANFD_HELGE  (O68955), ANFD_RHOCA  (Q07933), 

ANFD_RUMHU  (Q46082), ANFK_AZOVI  (P16267), ANFK_RHOCA  (Q07935), 
ANFK_RUMHU  (Q46084), NIFD_ACIFI  (P06662), NIFD_ALCFA  (Q44045), 
NIFD_AZOBR  (P25313), NIFD_AZOVI  (P07328), NIFD_BRADU  (P06121), 
NIFD_BRASP  (P06120), NIFD_CLOPA  (P00467), NIFD_CROS5  (O07642), 
NIFD_FRAAL  (Q02452), NIFD_HERSE  (P77874), NIFD_KLEPN  (P00466), 
NIFD_LEPBY  (Q00239), NIFD_METBA  (P55170), NIFD_METTL  (P20620), 
NIFD_NOSCO  (P52337), NIFD_NOSS1  (P00464), NIFD_RHICP  (P06769), 
NIFD_RHILT  (P00465), NIFD_RHOCA  (P08717), NIFD_RIPO1  (Q55029), 
NIFD_SINFN  (P19066), NIFE_AZOVI  (P08293), NIFE_BRADU  (P26506), 
NIFE_CLOPA  (P10996), NIFE_KLEPN  (P08737), NIFE_METBA  (P51755), 
NIFE_METMI  (P0CW54), NIFE_METMP  (P0CW55), NIFE_METTH  (O27607), 
NIFE_METTM  (P95297), NIFE_NOSS1  (Q44144), NIFE_RHILO  (Q98AP4), 
NIFE_RHIME  (Q92ZL2), NIFE_RHOCA  (P19055), NIFE_RIPO1  (O07355), 
NIFE_SINFN  (P55673), NIFK_ACIFI  (P15052), NIFK_AZOBR  (P25314), 
NIFK_AZOVI  (P07329), NIFK_BRADU  (P20621), NIFK_BRASP  (P06122), 
NIFK_CLOPA  (P11347), NIFK_CROS5  (O07643), NIFK_FRAAL  (Q57118), 
NIFK_HERSE  (P77875), NIFK_KLEPN  (P09772), NIFK_METBA  (P51754), 
NIFK_METMI  (P0CW52), NIFK_METMP  (P0CW53), NIFK_METTH  (O27606), 
NIFK_METTM  (P95296), NIFK_RIPO1  (Q55030), NIFK_SINFN  (P19067), 
NIFN_AZOVI  (P10336), NIFN_BRADU  (P26507), NIFN_HERSE  (O87627), 
NIFN_KLEPN  (P08738), NIFN_NOSS1  (Q44145), NIFN_RHILO  (Q98AP3), 
NIFN_RHIME  (P12781), NIFN_RHOCA  (P19077), NIFN_RIPO1  (O07356), 
NIFN_SINFN  (P55674), VNFD_AZOCH  (P15332), VNFD_AZOPA  (O68953), 
VNFD_AZOSA  (O68954), VNFD_AZOVI  (P16855), VNFK_AZOCH  (P15334), 
VNFK_AZOPA  (O68949), VNFK_AZOSA  (O68952), VNFK_AZOVI  (P16856), 
VNFK_TRIV2  (Q57302)
» more

UniProtKB/Swiss-Prot
False negative sequences		 6 sequences 

NIFD_METMI  (P0CW50), NIFD_METMP  (P0CW51), NIFD_METTH  (O27605), 

NIFD_METTM  (Q50788), NIFK_METTL  (P20622), NIFK_NOSS1  (P00468)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 2 sequences 

NIFD_ANASL  (P33177), NIFD_METIV  (P51605)


				
	

	

		UniProtKB/Swiss-Prot
'Unknown' sequences		
		
			1 sequence
			


			
Y584_MYCTU  (O86365)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			7 sequences
			


			
CETP_CHICK  (Q3V6R6), MDGA1_CHICK (Q0WYX8), MDGA1_HUMAN (Q8NFP4), 

			
MDGA1_MOUSE (Q0PMG2), MDGA1_RAT   (P85171), NAGA_VIBFU  (P96166), 
Y025_OSHVF  (Q6R7J8)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			75 PDB
			


			1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 
			
				1QH8; 2AFH; 2AFI; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8; 4TKU; 4TKV; 4WES; 4WN9; 
				4WNA; 4WZA; 4WZB; 4XPI; 5BVG; 5BVH; 5CX1; 5N6Y; 5VPW; 5VQ3; 5VQ4; 6BBL; 
				6CDK; 6O7L; 6O7M; 6O7N; 6O7O; 6O7P; 6O7Q; 6O7R; 6O7S; 6OP1; 6OP2; 6OP3; 
				6OP4; 6UG0; 6VXT; 7ADR; 7ADY; 7AIZ; 7JRF; 7MCI; 7UT6; 7UT7; 7UT8; 7UT9; 
				7UTA; 8BTS; 8CRS; 8DBX; 8DBY; 8DFC; 8DFD; 8DPN; 8E3T; 8E3U; 8E3V; 8ENL; 
				8ENM; 8ENN; 8ENO
			
			

			» more