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PROSITE entry PS00715


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PURL: https://purl.expasy.org/prosite/signature/PS00715

Direct ScanProsite submission
General information about the entry

Entry name [info] SIGMA70_1
Accession [info] PS00715
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-NOV-1997 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00592

Name and characterization of the entry

Description [info] Sigma-70 factors family signature 1.
Pattern [info] 
[DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 152 in 152 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 13
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.34 %
Recall (true positives / (true positives + false negatives)) 92.07 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 151 sequences 

FLIA_ECO57  (P0AEM8), FLIA_ECOL6  (P0AEM7), FLIA_ECOLI  (P0AEM6), 

FLIA_PSEAE  (P29248), FLIA_SALTI  (P0A2E9), FLIA_SALTY  (P0A2E8), 
FLIA_YEREN  (P52621), HRDA_STRCO  (P18182), HRDC_STRCO  (P18184), 
HRDD_STRCO  (P18249), HRDD_STRGR  (Q59914), HRDD_STRVF  (Q60012), 
RP28_BACAN  (P62182), RP28_BACCR  (P62180), RP28_BACTK  (P62181), 
RP35_BACAN  (P62177), RP35_BACCR  (P62178), RP35_BACTK  (P62179), 
RPOD_AGRFC  (P33452), RPOD_BORBU  (P52323), RPOD_BUCAI  (P57163), 
RPOD_BUCAP  (P32001), RPOD_BUCBP  (Q89B10), RPOD_CAUVC  (P52324), 
RPOD_COXBU  (Q83BB6), RPOD_ECOLI  (P00579), RPOD_HAEIN  (P43766), 
RPOD_HELPJ  (Q9ZMY3), RPOD_HELPY  (P55993), RPOD_LEPIC  (P61540), 
RPOD_LEPIN  (P59117), RPOD_MYXXA  (P17531), RPOD_NEIGO  (P52325), 
RPOD_PSEAE  (P26480), RPOD_PSEPH  (P52326), RPOD_PSEPU  (P52327), 
RPOD_RHIEC  (Q2K619), RPOD_RHIME  (Q59753), RPOD_RHOCA  (P0CZ15), 
RPOD_RHOCB  (D5AQI9), RPOD_RICBR  (Q1RKH7), RPOD_RICCN  (Q92FZ8), 
RPOD_RICFE  (Q4UJT1), RPOD_RICPR  (P33451), RPOD_RICTY  (Q68VQ5), 
RPOD_SALTI  (P0A2E4), RPOD_SALTY  (P0A2E3), RPOD_SERMA  (P43344), 
RPOD_SHEVD  (O24744), RPOD_TREPA  (O83506), RPOD_XANAC  (Q8PG33), 
RPOD_XANCP  (Q8P4H2), RPOD_XYLFA  (Q9PDM9), RPOD_XYLFT  (Q87DT7), 
RPOF_KITAU  (P37970), RPOF_STRCO  (P37971), RPOH_BUCAI  (O05385), 
RPOH_BUCAP  (Q8KA76), RPOH_BUCBP  (Q89B27), RPOH_CAUVC  (P0CAW9), 
RPOH_CAUVN  (B8H3C3), RPOH_CITFR  (P11539), RPOH_ECO57  (P0AGB5), 
RPOH_ECOL6  (P0AGB4), RPOH_ECOLI  (P0AGB3), RPOH_ENTCL  (P50508), 
RPOH_HAEIN  (P44404), RPOH_PROMI  (P50509), RPOH_PSEAE  (P42378), 
RPOH_RHIRD  (P50507), RPOH_SERMA  (P50510), RPOH_VIBCH  (P50511), 
RPOH_VIBVU  (Q8DD54), RPOH_ZYMMO  (P50512), RPOS_COXBU  (Q9KI19), 
RPOS_ECOLI  (P13445), RPOS_PSEAE  (P45684), RPOS_SALDU  (P0A2E7), 
RPOS_SALT1  (D0ZVL4), RPOS_SALTI  (P0A2E6), RPOS_SALTU  (F5ZTT9), 
RPOS_SALTY  (P0DM81), RPOS_SHIFL  (P35540), RPOS_VIBCH  (O51804), 
RPOS_YEREN  (P47765), RPSB_BACAN  (Q9K5J6), RPSB_CORDI  (P33118), 
RPSB_MYXXA  (P19433), RPSB_NOSS1  (Q03065), RPSB_STIAD  (Q01624), 
RPSC_NOSS1  (Q03066), RPSC_SYNY3  (Q59996), RPSD_BACSU  (P10726), 
RPSE_BACSU  (P06222), RPSE_CLOAB  (P33657), RPSF_BACLI  (P26764), 
RPSF_BACSU  (P07860), RPSF_PRIMG  (P35145), RPSG_BACSU  (P19940), 
RPSG_CLOAB  (P33658), RPSH_BACLI  (P02964), RPSH_BACSU  (P17869), 
RPSK_BACSU  (P12254), RPSW_STRCO  (P17211), RPSX_BACTK  (P26768), 
SIGA1_SYNE7 (P38023), SIGA2_SYNE7 (Q31ME3), SIGA4_SYNE7 (Q31QR8), 
SIGA_ARATH  (O24629), SIGA_BACSP  (P52328), SIGA_BACSU  (P06224), 
SIGA_CHLMU  (P56835), SIGA_CHLPN  (Q9Z7F0), SIGA_CHLTR  (P18333), 
SIGA_CLOAB  (P33656), SIGA_ENTFA  (P52329), SIGA_HALH5  (O66381), 
SIGA_KITAU  (P27785), SIGA_LACLA  (Q04506), SIGA_LACLC  (P58290), 
SIGA_LISIN  (Q92BQ6), SIGA_LISMO  (P52331), SIGA_MICAE  (P52322), 
SIGA_MYCBO  (P0A603), SIGA_MYCGE  (P47491), SIGA_MYCPN  (P78022), 
SIGA_MYCTO  (P9WGI0), SIGA_MYCTU  (P9WGI1), SIGA_NOSS1  (P26683), 
SIGA_ORYSJ  (Q0J7T6), SIGA_STAA8  (P0A0J0), SIGA_STAAC  (Q5HFJ9), 
SIGA_STAAM  (P0A0I8), SIGA_STAAN  (Q99TT5), SIGA_STAAR  (Q6GGD8), 
SIGA_STAAS  (Q6G905), SIGA_STAAW  (P0A0I9), SIGA_STAEQ  (Q5HNY7), 
SIGA_STAES  (Q8CP24), SIGA_STRCO  (P18183), SIGA_STRGG  (B1VXR4), 
SIGA_STRGR  (P77951), SIGA_STRMU  (O33662), SIGA_STRPN  (P0A4I9), 
SIGA_STRR6  (P0A4J0), SIGA_SYNY3  (P74565), SIGA_THEMA  (P77994), 
SIGB_MYCTO  (P9WGI4), SIGB_MYCTU  (P9WGI5), SIGD_ARATH  (Q9ZSL6), 
SIGF_ARATH  (Q9LD95)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

LAFS_VIBPA  (Q03474), RPSB_BACSU  (P06574), RPSC_MYXXA  (Q07083), 

SHBA_STRGG  (B1W3T1), SIGA3_SYNE7 (Q31QG5), SIGA_THEAQ  (Q9EZJ8), 
SIGA_THET2  (Q72L95), SIGI_BACAN  (P0DO98), SIGI_BACSU  (O31654), 
SIGO_BACSU  (O34843), TCSR1_PARSO (V5T8H7), TCSR2_PARSO (P0DUB5), 
TCSR3_PARS9 (T0CUB8)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

HLDE_STRCO  (Q9Z5B5)


				
	

	

		PDB
[Detailed view]		
		
			191 PDB
			


			pdb_00001sig; pdb_00003iyd; pdb_00004jk1; pdb_00004jk2; pdb_00004jkr; pdb_00004kmu; pdb_00004kn4; pdb_00004kn7; pdb_00004ljz; pdb_00004lk0; pdb_00004lk1; pdb_00004llg; 
			
				pdb_00004mex; pdb_00004mey; pdb_00004x8k; pdb_00004xsx; pdb_00004xsy; pdb_00004xsz; pdb_00004yfk; pdb_00004yfn; pdb_00004yfx; pdb_00004yg2; pdb_00004yln; pdb_00004ylo; 
				pdb_00004ylp; pdb_00004zh2; pdb_00004zh3; pdb_00004zh4; pdb_00005ipl; pdb_00005ipm; pdb_00005ipn; pdb_00005uac; pdb_00005uag; pdb_00005uah; pdb_00005uaj; pdb_00005ual; 
				pdb_00005uaq; pdb_00005uh5; pdb_00005uh6; pdb_00005uh8; pdb_00005uh9; pdb_00005uha; pdb_00005uhb; pdb_00005uhc; pdb_00005uhd; pdb_00005uhe; pdb_00005uhf; pdb_00005uhg; 
				pdb_00005vsw; pdb_00005vt0; pdb_00005w1s; pdb_00005w1t; pdb_00006b6h; pdb_00006byu; pdb_00006bzo; pdb_00006c04; pdb_00006c05; pdb_00006c06; pdb_00006c9y; pdb_00006ca0; 
				pdb_00006cux; pdb_00006edt; pdb_00006ee8; pdb_00006eec; pdb_00006fbv; pdb_00006jnx; pdb_00006k4y; pdb_00006kj6; pdb_00006ldi; pdb_00006m7j; pdb_00006n4c; pdb_00006n57; 
				pdb_00006n58; pdb_00006n62; pdb_00006oul; pdb_00006p18; pdb_00006p1k; pdb_00006pb4; pdb_00006pb5; pdb_00006pb6; pdb_00006pmi; pdb_00006pmj; pdb_00006psq; pdb_00006psr; 
				pdb_00006pss; pdb_00006pst; pdb_00006psu; pdb_00006psv; pdb_00006psw; pdb_00006utv; pdb_00006utw; pdb_00006utx; pdb_00006uty; pdb_00006utz; pdb_00006uu0; pdb_00006uu1; 
				pdb_00006uu2; pdb_00006uu3; pdb_00006uu4; pdb_00006uu5; pdb_00006uu6; pdb_00006uu7; pdb_00006uu8; pdb_00006uu9; pdb_00006uua; pdb_00006uub; pdb_00006uuc; pdb_00006vjs; 
				pdb_00006vvx; pdb_00006vvy; pdb_00006vvz; pdb_00006vw0; pdb_00006wmu; pdb_00006xh7; pdb_00006xh8; pdb_00006xl5; pdb_00006xl9; pdb_00006xlj; pdb_00006xll; pdb_00006xlm; 
				pdb_00007bef; pdb_00007beg; pdb_00007c17; pdb_00007c97; pdb_00007chw; pdb_00007ckq; pdb_00007dy6; pdb_00007f0r; pdb_00007f75; pdb_00007khb; pdb_00007khc; pdb_00007khe; 
				pdb_00007khi; pdb_00007kif; pdb_00007kim; pdb_00007kin; pdb_00007mkd; pdb_00007mke; pdb_00007mki; pdb_00007mkj; pdb_00007n4e; pdb_00007pp4; pdb_00007q4u; pdb_00007q59; 
				pdb_00007szj; pdb_00007szk; pdb_00007u22; pdb_00007ubm; pdb_00007ubn; pdb_00007vf9; pdb_00007vpz; pdb_00007vwy; pdb_00007vwz; pdb_00007w5w; pdb_00007w5x; pdb_00007w5y; 
				pdb_00007x74; pdb_00007x75; pdb_00007x76; pdb_00007xl3; pdb_00007xl4; pdb_00007xui; pdb_00007xya; pdb_00007zf2; pdb_00008ad1; pdb_00008b3z; pdb_00008ftd; pdb_00008gzg; 
				pdb_00008gzh; pdb_00008h3v; pdb_00008h40; pdb_00008hih; pdb_00008hkc; pdb_00008hvr; pdb_00008igr; pdb_00008igs; pdb_00008jke; pdb_00008jo2; pdb_00008k59; pdb_00008k60; 
				pdb_00008to1; pdb_00008to6; pdb_00008to8; pdb_00008toe; pdb_00008tom; pdb_00008u3b; pdb_00008vjl; pdb_00008vjm; pdb_00008x6f; pdb_00008xa7; pdb_00008y6u
			
			

			» more