Home  |  Contact
Entry: PS00715

General information about the entry

Entry name [info] SIGMA70_1
Accession [info] PS00715
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-NOV-1997 DATA UPDATE;
07-APR-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00592

Name and characterization of the entry

Description [info] Sigma-70 factors family signature 1.
Pattern [info] 
[DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_02 which contains 564'638 sequence entries.


Total number of hits 152 in 152 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 13
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.34 %
Recall (true positives / (true positives + false negatives)) 92.07 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 151 sequences 

FLIA_ECO57  (P0AEM8    ), FLIA_ECOL6  (P0AEM7    ), FLIA_ECOLI  (P0AEM6    ), 

FLIA_PSEAE  (P29248    ), FLIA_SALTI  (P0A2E9    ), FLIA_SALTY  (P0A2E8    ), 
FLIA_YEREN  (P52621    ), HRDA_STRCO  (P18182    ), HRDC_STRCO  (P18184    ), 
HRDD_STRCO  (P18249    ), HRDD_STRGR  (Q59914    ), HRDD_STRVF  (Q60012    ), 
RP28_BACAN  (P62182    ), RP28_BACCR  (P62180    ), RP28_BACTK  (P62181    ), 
RP35_BACAN  (P62177    ), RP35_BACCR  (P62178    ), RP35_BACTK  (P62179    ), 
RPOD_AGRFC  (P33452    ), RPOD_BORBU  (P52323    ), RPOD_BUCAI  (P57163    ), 
RPOD_BUCAP  (P32001    ), RPOD_BUCBP  (Q89B10    ), RPOD_CAUVC  (P52324    ), 
RPOD_COXBU  (Q83BB6    ), RPOD_ECOLI  (P00579    ), RPOD_HAEIN  (P43766    ), 
RPOD_HELPJ  (Q9ZMY3    ), RPOD_HELPY  (P55993    ), RPOD_LEPIC  (P61540    ), 
RPOD_LEPIN  (P59117    ), RPOD_MYXXA  (P17531    ), RPOD_NEIGO  (P52325    ), 
RPOD_PSEAE  (P26480    ), RPOD_PSEPH  (P52326    ), RPOD_PSEPU  (P52327    ), 
RPOD_RHIEC  (Q2K619    ), RPOD_RHIME  (Q59753    ), RPOD_RHOCA  (P0CZ15    ), 
RPOD_RHOCB  (D5AQI9    ), RPOD_RICBR  (Q1RKH7    ), RPOD_RICCN  (Q92FZ8    ), 
RPOD_RICFE  (Q4UJT1    ), RPOD_RICPR  (P33451    ), RPOD_RICTY  (Q68VQ5    ), 
RPOD_SALTI  (P0A2E4    ), RPOD_SALTY  (P0A2E3    ), RPOD_SERMA  (P43344    ), 
RPOD_SHEVD  (O24744    ), RPOD_TREPA  (O83506    ), RPOD_XANAC  (Q8PG33    ), 
RPOD_XANCP  (Q8P4H2    ), RPOD_XYLFA  (Q9PDM9    ), RPOD_XYLFT  (Q87DT7    ), 
RPOF_KITAU  (P37970    ), RPOF_STRCO  (P37971    ), RPOH_BUCAI  (O05385    ), 
RPOH_BUCAP  (Q8KA76    ), RPOH_BUCBP  (Q89B27    ), RPOH_CAUVC  (P0CAW9    ), 
RPOH_CAUVN  (B8H3C3    ), RPOH_CITFR  (P11539    ), RPOH_ECO57  (P0AGB5    ), 
RPOH_ECOL6  (P0AGB4    ), RPOH_ECOLI  (P0AGB3    ), RPOH_ENTCL  (P50508    ), 
RPOH_HAEIN  (P44404    ), RPOH_PROMI  (P50509    ), RPOH_PSEAE  (P42378    ), 
RPOH_RHIRD  (P50507    ), RPOH_SERMA  (P50510    ), RPOH_VIBCH  (P50511    ), 
RPOH_VIBVU  (Q8DD54    ), RPOH_ZYMMO  (P50512    ), RPOS_COXBU  (Q9KI19    ), 
RPOS_ECOLI  (P13445    ), RPOS_PSEAE  (P45684    ), RPOS_SALDU  (P0A2E7    ), 
RPOS_SALT1  (D0ZVL4    ), RPOS_SALTI  (P0A2E6    ), RPOS_SALTU  (F5ZTT9    ), 
RPOS_SALTY  (P0DM81    ), RPOS_SHIFL  (P35540    ), RPOS_VIBCH  (O51804    ), 
RPOS_YEREN  (P47765    ), RPSB_BACAN  (Q9K5J6    ), RPSB_CORDI  (P33118    ), 
RPSB_MYXXA  (P19433    ), RPSB_NOSS1  (Q03065    ), RPSB_STIAD  (Q01624    ), 
RPSC_NOSS1  (Q03066    ), RPSC_SYNY3  (Q59996    ), RPSD_BACSU  (P10726    ), 
RPSE_BACSU  (P06222    ), RPSE_CLOAB  (P33657    ), RPSF_BACLI  (P26764    ), 
RPSF_BACME  (P35145    ), RPSF_BACSU  (P07860    ), RPSG_BACSU  (P19940    ), 
RPSG_CLOAB  (P33658    ), RPSH_BACLI  (P02964    ), RPSH_BACSU  (P17869    ), 
RPSK_BACSU  (P12254    ), RPSW_STRCO  (P17211    ), RPSX_BACTK  (P26768    ), 
SIGA1_SYNE7 (P38023    ), SIGA2_SYNE7 (Q31ME3    ), SIGA4_SYNE7 (Q31QR8    ), 
SIGA_ARATH  (O24629    ), SIGA_BACHD  (O66381    ), SIGA_BACSP  (P52328    ), 
SIGA_BACSU  (P06224    ), SIGA_CHLMU  (P56835    ), SIGA_CHLPN  (Q9Z7F0    ), 
SIGA_CHLTR  (P18333    ), SIGA_CLOAB  (P33656    ), SIGA_ENTFA  (P52329    ), 
SIGA_KITAU  (P27785    ), SIGA_LACLA  (Q04506    ), SIGA_LACLC  (P58290    ), 
SIGA_LISIN  (Q92BQ6    ), SIGA_LISMO  (P52331    ), SIGA_MICAE  (P52322    ), 
SIGA_MYCBO  (P0A603    ), SIGA_MYCGE  (P47491    ), SIGA_MYCPN  (P78022    ), 
SIGA_MYCTO  (P9WGI0    ), SIGA_MYCTU  (P9WGI1    ), SIGA_NOSS1  (P26683    ), 
SIGA_ORYSJ  (Q0J7T6    ), SIGA_STAA8  (P0A0J0    ), SIGA_STAAC  (Q5HFJ9    ), 
SIGA_STAAM  (P0A0I8    ), SIGA_STAAN  (Q99TT5    ), SIGA_STAAR  (Q6GGD8    ), 
SIGA_STAAS  (Q6G905    ), SIGA_STAAW  (P0A0I9    ), SIGA_STAEQ  (Q5HNY7    ), 
SIGA_STAES  (Q8CP24    ), SIGA_STRCO  (P18183    ), SIGA_STRGG  (B1VXR4    ), 
SIGA_STRGR  (P77951    ), SIGA_STRMU  (O33662    ), SIGA_STRPN  (P0A4I9    ), 
SIGA_STRR6  (P0A4J0    ), SIGA_SYNY3  (P74565    ), SIGA_THEMA  (P77994    ), 
SIGB_MYCTO  (P9WGI4    ), SIGB_MYCTU  (P9WGI5    ), SIGD_ARATH  (Q9ZSL6    ), 
SIGF_ARATH  (Q9LD95    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

LAFS_VIBPA  (Q03474    ), RPSB_BACSU  (P06574    ), RPSC_MYXXA  (Q07083    ), 

SHBA_STRGG  (B1W3T1    ), SIGA3_SYNE7 (Q31QG5    ), SIGA_THEAQ  (Q9EZJ8    ), 
SIGA_THET2  (Q72L95    ), SIGI_BACAN  (P0DO98    ), SIGI_BACSU  (O31654    ), 
SIGO_BACSU  (O34843    ), TCSR1_PAESO (V5T8H7    ), TCSR2_PAESO (P0DUB5    ), 
TCSR3_PAES9 (T0CUB8    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

HLDE_STRCO  (Q9Z5B5    )


				
	

	

		PDB
[Detailed view]		
		
			114 PDB
			


			1SIG; 3IYD; 4JK1; 4JK2; 4JKR; 4KMU; 4KN4; 4KN7; 4LJZ; 4LK0; 4LK1; 4LLG; 
			
				4MEX; 4MEY; 4X8K; 4XSX; 4XSY; 4XSZ; 4YFK; 4YFN; 4YFX; 4YG2; 4YLN; 4YLO; 
				4YLP; 4ZH2; 4ZH3; 4ZH4; 5IPL; 5IPM; 5IPN; 5UAC; 5UAG; 5UAH; 5UAJ; 5UAL; 
				5UAQ; 5UH5; 5UH6; 5UH8; 5UH9; 5UHA; 5UHB; 5UHC; 5UHD; 5UHE; 5UHF; 5UHG; 
				5VSW; 5VT0; 5W1S; 5W1T; 6B6H; 6BYU; 6BZO; 6C04; 6C05; 6C06; 6C9Y; 6CA0; 
				6CUX; 6EDT; 6EE8; 6EEC; 6FBV; 6JNX; 6K4Y; 6KJ6; 6LDI; 6M7J; 6N4C; 6N57; 
				6N58; 6OUL; 6P18; 6P1K; 6PB4; 6PB5; 6PB6; 6PMI; 6PMJ; 6PSQ; 6PSR; 6PSS; 
				6PST; 6PSU; 6PSV; 6PSW; 6UTV; 6UTW; 6UTX; 6UTY; 6UTZ; 6UU0; 6UU1; 6UU2; 
				6UU3; 6UU4; 6UU5; 6UU6; 6UU7; 6UUA; 6UUB; 6UUC; 6VVX; 6VVY; 6VVZ; 6VW0; 
				7C17; 7CKQ; 7KHB; 7KHC; 7KHE; 7KHI
			
			

			» more

				
	





View entry in original PROSITE format


View entry in raw text format (no links)


Direct ScanProsite submission