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Entry: PS00715 |
Entry name [info] | SIGMA70_1 |
Accession [info] | PS00715 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1992 CREATED;
01-NOV-1997 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00592 |
Description [info] | Sigma-70 factors family signature 1. |
Pattern [info] |
[DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP]. |
Total number of hits | 152 in 152 different sequences |
Number of true positive hits | 151 in 151 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 13 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 99.34 % |
Recall (true positives / (true positives + false negatives)) | 92.07 % |
Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
151 sequences
FLIA_ECO57 (P0AEM8 ), FLIA_ECOL6 (P0AEM7 ), FLIA_ECOLI (P0AEM6 ), FLIA_PSEAE (P29248 ), FLIA_SALTI (P0A2E9 ), FLIA_SALTY (P0A2E8 ), FLIA_YEREN (P52621 ), HRDA_STRCO (P18182 ), HRDC_STRCO (P18184 ), HRDD_STRCO (P18249 ), HRDD_STRGR (Q59914 ), HRDD_STRVF (Q60012 ), RP28_BACAN (P62182 ), RP28_BACCR (P62180 ), RP28_BACTK (P62181 ), RP35_BACAN (P62177 ), RP35_BACCR (P62178 ), RP35_BACTK (P62179 ), RPOD_AGRFC (P33452 ), RPOD_BORBU (P52323 ), RPOD_BUCAI (P57163 ), RPOD_BUCAP (P32001 ), RPOD_BUCBP (Q89B10 ), RPOD_CAUVC (P52324 ), RPOD_COXBU (Q83BB6 ), RPOD_ECOLI (P00579 ), RPOD_HAEIN (P43766 ), RPOD_HELPJ (Q9ZMY3 ), RPOD_HELPY (P55993 ), RPOD_LEPIC (P61540 ), RPOD_LEPIN (P59117 ), RPOD_MYXXA (P17531 ), RPOD_NEIGO (P52325 ), RPOD_PSEAE (P26480 ), RPOD_PSEPH (P52326 ), RPOD_PSEPU (P52327 ), RPOD_RHIEC (Q2K619 ), RPOD_RHIME (Q59753 ), RPOD_RHOCA (P0CZ15 ), RPOD_RHOCB (D5AQI9 ), RPOD_RICBR (Q1RKH7 ), RPOD_RICCN (Q92FZ8 ), RPOD_RICFE (Q4UJT1 ), RPOD_RICPR (P33451 ), RPOD_RICTY (Q68VQ5 ), RPOD_SALTI (P0A2E4 ), RPOD_SALTY (P0A2E3 ), RPOD_SERMA (P43344 ), RPOD_SHEVD (O24744 ), RPOD_TREPA (O83506 ), RPOD_XANAC (Q8PG33 ), RPOD_XANCP (Q8P4H2 ), RPOD_XYLFA (Q9PDM9 ), RPOD_XYLFT (Q87DT7 ), RPOF_KITAU (P37970 ), RPOF_STRCO (P37971 ), RPOH_BUCAI (O05385 ), RPOH_BUCAP (Q8KA76 ), RPOH_BUCBP (Q89B27 ), RPOH_CAUVC (P0CAW9 ), RPOH_CAUVN (B8H3C3 ), RPOH_CITFR (P11539 ), RPOH_ECO57 (P0AGB5 ), RPOH_ECOL6 (P0AGB4 ), RPOH_ECOLI (P0AGB3 ), RPOH_ENTCL (P50508 ), RPOH_HAEIN (P44404 ), RPOH_PROMI (P50509 ), RPOH_PSEAE (P42378 ), RPOH_RHIRD (P50507 ), RPOH_SERMA (P50510 ), RPOH_VIBCH (P50511 ), RPOH_VIBVU (Q8DD54 ), RPOH_ZYMMO (P50512 ), RPOS_COXBU (Q9KI19 ), RPOS_ECOLI (P13445 ), RPOS_PSEAE (P45684 ), RPOS_SALDU (P0A2E7 ), RPOS_SALT1 (D0ZVL4 ), RPOS_SALTI (P0A2E6 ), RPOS_SALTU (F5ZTT9 ), RPOS_SALTY (P0DM81 ), RPOS_SHIFL (P35540 ), RPOS_VIBCH (O51804 ), RPOS_YEREN (P47765 ), RPSB_BACAN (Q9K5J6 ), RPSB_CORDI (P33118 ), RPSB_MYXXA (P19433 ), RPSB_NOSS1 (Q03065 ), RPSB_STIAD (Q01624 ), RPSC_NOSS1 (Q03066 ), RPSC_SYNY3 (Q59996 ), RPSD_BACSU (P10726 ), RPSE_BACSU (P06222 ), RPSE_CLOAB (P33657 ), RPSF_BACLI (P26764 ), RPSF_BACME (P35145 ), RPSF_BACSU (P07860 ), RPSG_BACSU (P19940 ), RPSG_CLOAB (P33658 ), RPSH_BACLI (P02964 ), RPSH_BACSU (P17869 ), RPSK_BACSU (P12254 ), RPSW_STRCO (P17211 ), RPSX_BACTK (P26768 ), SIGA1_SYNE7 (P38023 ), SIGA2_SYNE7 (Q31ME3 ), SIGA4_SYNE7 (Q31QR8 ), SIGA_ARATH (O24629 ), SIGA_BACHD (O66381 ), SIGA_BACSP (P52328 ), SIGA_BACSU (P06224 ), SIGA_CHLMU (P56835 ), SIGA_CHLPN (Q9Z7F0 ), SIGA_CHLTR (P18333 ), SIGA_CLOAB (P33656 ), SIGA_ENTFA (P52329 ), SIGA_KITAU (P27785 ), SIGA_LACLA (Q04506 ), SIGA_LACLC (P58290 ), SIGA_LISIN (Q92BQ6 ), SIGA_LISMO (P52331 ), SIGA_MICAE (P52322 ), SIGA_MYCBO (P0A603 ), SIGA_MYCGE (P47491 ), SIGA_MYCPN (P78022 ), SIGA_MYCTO (P9WGI0 ), SIGA_MYCTU (P9WGI1 ), SIGA_NOSS1 (P26683 ), SIGA_ORYSJ (Q0J7T6 ), SIGA_STAA8 (P0A0J0 ), SIGA_STAAC (Q5HFJ9 ), SIGA_STAAM (P0A0I8 ), SIGA_STAAN (Q99TT5 ), SIGA_STAAR (Q6GGD8 ), SIGA_STAAS (Q6G905 ), SIGA_STAAW (P0A0I9 ), SIGA_STAEQ (Q5HNY7 ), SIGA_STAES (Q8CP24 ), SIGA_STRCO (P18183 ), SIGA_STRGG (B1VXR4 ), SIGA_STRGR (P77951 ), SIGA_STRMU (O33662 ), SIGA_STRPN (P0A4I9 ), SIGA_STRR6 (P0A4J0 ), SIGA_SYNY3 (P74565 ), SIGA_THEMA (P77994 ), SIGB_MYCTO (P9WGI4 ), SIGB_MYCTU (P9WGI5 ), SIGD_ARATH (Q9ZSL6 ), SIGF_ARATH (Q9LD95 )» more
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UniProtKB/Swiss-Prot False negative sequences |
13 sequences
LAFS_VIBPA (Q03474 ), RPSB_BACSU (P06574 ), RPSC_MYXXA (Q07083 ), SHBA_STRGG (B1W3T1 ), SIGA3_SYNE7 (Q31QG5 ), SIGA_THEAQ (Q9EZJ8 ), SIGA_THET2 (Q72L95 ), SIGI_BACAN (P0DO98 ), SIGI_BACSU (O31654 ), SIGO_BACSU (O34843 ), TCSR1_PAESO (V5T8H7 ), TCSR2_PAESO (P0DUB5 ), TCSR3_PAES9 (T0CUB8 )» more |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
HLDE_STRCO (Q9Z5B5 ) |
PDB [Detailed view] |
108 PDB
1SIG; 3IYD; 4JK1; 4JK2; 4JKR; 4KMU; 4KN4; 4KN7; 4LJZ; 4LK0; 4LK1; 4LLG; 4MEX; 4MEY; 4X8K; 4XSX; 4XSY; 4XSZ; 4YFK; 4YFN; 4YFX; 4YG2; 4YLN; 4YLO; 4YLP; 4ZH2; 4ZH3; 4ZH4; 5IPL; 5IPM; 5IPN; 5UAC; 5UAG; 5UAH; 5UAJ; 5UAL; 5UAQ; 5UH5; 5UH6; 5UH8; 5UH9; 5UHA; 5UHB; 5UHC; 5UHD; 5UHE; 5UHF; 5UHG; 5VSW; 5VT0; 5W1S; 5W1T; 6B6H; 6BYU; 6BZO; 6C04; 6C05; 6C06; 6C9Y; 6CA0; 6CUX; 6EDT; 6EE8; 6EEC; 6FBV; 6JNX; 6K4Y; 6KJ6; 6LDI; 6M7J; 6N4C; 6N57; 6N58; 6OUL; 6P18; 6P1K; 6PB4; 6PB5; 6PB6; 6PMI; 6PMJ; 6PSQ; 6PSR; 6PSS; 6PST; 6PSU; 6PSV; 6PSW; 6UTV; 6UTW; 6UTX; 6UTY; 6UTZ; 6UU0; 6UU1; 6UU2; 6UU3; 6UU4; 6UU5; 6UU6; 6UU7; 6UUA; 6UUB; 6UUC; 7C17; 7KHB; 7KHC; 7KHI » more |