PROSITE entry PS00715
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | SIGMA70_1 |
| Accession [info] | PS00715 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1992 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00592 |
Name and characterization of the entry
| Description [info] | Sigma-70 factors family signature 1. |
| Pattern [info] |
[DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP]. |
Numerical results [info]
| Total number of hits | 152 in 152 different sequences |
| Number of true positive hits | 151 in 151 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 13 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 99.34 % |
| Recall (true positives / (true positives + false negatives)) | 92.07 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
151 sequences
FLIA_ECO57 (P0AEM8), FLIA_ECOL6 (P0AEM7), FLIA_ECOLI (P0AEM6), FLIA_PSEAE (P29248), FLIA_SALTI (P0A2E9), FLIA_SALTY (P0A2E8), FLIA_YEREN (P52621), HRDA_STRCO (P18182), HRDC_STRCO (P18184), HRDD_STRCO (P18249), HRDD_STRGR (Q59914), HRDD_STRVF (Q60012), RP28_BACAN (P62182), RP28_BACCR (P62180), RP28_BACTK (P62181), RP35_BACAN (P62177), RP35_BACCR (P62178), RP35_BACTK (P62179), RPOD_AGRFC (P33452), RPOD_BORBU (P52323), RPOD_BUCAI (P57163), RPOD_BUCAP (P32001), RPOD_BUCBP (Q89B10), RPOD_CAUVC (P52324), RPOD_COXBU (Q83BB6), RPOD_ECOLI (P00579), RPOD_HAEIN (P43766), RPOD_HELPJ (Q9ZMY3), RPOD_HELPY (P55993), RPOD_LEPIC (P61540), RPOD_LEPIN (P59117), RPOD_MYXXA (P17531), RPOD_NEIGO (P52325), RPOD_PSEAE (P26480), RPOD_PSEPH (P52326), RPOD_PSEPU (P52327), RPOD_RHIEC (Q2K619), RPOD_RHIME (Q59753), RPOD_RHOCA (P0CZ15), RPOD_RHOCB (D5AQI9), RPOD_RICBR (Q1RKH7), RPOD_RICCN (Q92FZ8), RPOD_RICFE (Q4UJT1), RPOD_RICPR (P33451), RPOD_RICTY (Q68VQ5), RPOD_SALTI (P0A2E4), RPOD_SALTY (P0A2E3), RPOD_SERMA (P43344), RPOD_SHEVD (O24744), RPOD_TREPA (O83506), RPOD_XANAC (Q8PG33), RPOD_XANCP (Q8P4H2), RPOD_XYLFA (Q9PDM9), RPOD_XYLFT (Q87DT7), RPOF_KITAU (P37970), RPOF_STRCO (P37971), RPOH_BUCAI (O05385), RPOH_BUCAP (Q8KA76), RPOH_BUCBP (Q89B27), RPOH_CAUVC (P0CAW9), RPOH_CAUVN (B8H3C3), RPOH_CITFR (P11539), RPOH_ECO57 (P0AGB5), RPOH_ECOL6 (P0AGB4), RPOH_ECOLI (P0AGB3), RPOH_ENTCL (P50508), RPOH_HAEIN (P44404), RPOH_PROMI (P50509), RPOH_PSEAE (P42378), RPOH_RHIRD (P50507), RPOH_SERMA (P50510), RPOH_VIBCH (P50511), RPOH_VIBVU (Q8DD54), RPOH_ZYMMO (P50512), RPOS_COXBU (Q9KI19), RPOS_ECOLI (P13445), RPOS_PSEAE (P45684), RPOS_SALDU (P0A2E7), RPOS_SALT1 (D0ZVL4), RPOS_SALTI (P0A2E6), RPOS_SALTU (F5ZTT9), RPOS_SALTY (P0DM81), RPOS_SHIFL (P35540), RPOS_VIBCH (O51804), RPOS_YEREN (P47765), RPSB_BACAN (Q9K5J6), RPSB_CORDI (P33118), RPSB_MYXXA (P19433), RPSB_NOSS1 (Q03065), RPSB_STIAD (Q01624), RPSC_NOSS1 (Q03066), RPSC_SYNY3 (Q59996), RPSD_BACSU (P10726), RPSE_BACSU (P06222), RPSE_CLOAB (P33657), RPSF_BACLI (P26764), RPSF_BACSU (P07860), RPSF_PRIMG (P35145), RPSG_BACSU (P19940), RPSG_CLOAB (P33658), RPSH_BACLI (P02964), RPSH_BACSU (P17869), RPSK_BACSU (P12254), RPSW_STRCO (P17211), RPSX_BACTK (P26768), SIGA1_SYNE7 (P38023), SIGA2_SYNE7 (Q31ME3), SIGA4_SYNE7 (Q31QR8), SIGA_ARATH (O24629), SIGA_BACSP (P52328), SIGA_BACSU (P06224), SIGA_CHLMU (P56835), SIGA_CHLPN (Q9Z7F0), SIGA_CHLTR (P18333), SIGA_CLOAB (P33656), SIGA_ENTFA (P52329), SIGA_HALH5 (O66381), SIGA_KITAU (P27785), SIGA_LACLA (Q04506), SIGA_LACLC (P58290), SIGA_LISIN (Q92BQ6), SIGA_LISMO (P52331), SIGA_MICAE (P52322), SIGA_MYCBO (P0A603), SIGA_MYCGE (P47491), SIGA_MYCPN (P78022), SIGA_MYCTO (P9WGI0), SIGA_MYCTU (P9WGI1), SIGA_NOSS1 (P26683), SIGA_ORYSJ (Q0J7T6), SIGA_STAA8 (P0A0J0), SIGA_STAAC (Q5HFJ9), SIGA_STAAM (P0A0I8), SIGA_STAAN (Q99TT5), SIGA_STAAR (Q6GGD8), SIGA_STAAS (Q6G905), SIGA_STAAW (P0A0I9), SIGA_STAEQ (Q5HNY7), SIGA_STAES (Q8CP24), SIGA_STRCO (P18183), SIGA_STRGG (B1VXR4), SIGA_STRGR (P77951), SIGA_STRMU (O33662), SIGA_STRPN (P0A4I9), SIGA_STRR6 (P0A4J0), SIGA_SYNY3 (P74565), SIGA_THEMA (P77994), SIGB_MYCTO (P9WGI4), SIGB_MYCTU (P9WGI5), SIGD_ARATH (Q9ZSL6), SIGF_ARATH (Q9LD95)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
13 sequences
LAFS_VIBPA (Q03474), RPSB_BACSU (P06574), RPSC_MYXXA (Q07083), SHBA_STRGG (B1W3T1), SIGA3_SYNE7 (Q31QG5), SIGA_THEAQ (Q9EZJ8), SIGA_THET2 (Q72L95), SIGI_BACAN (P0DO98), SIGI_BACSU (O31654), SIGO_BACSU (O34843), TCSR1_PARSO (V5T8H7), TCSR2_PARSO (P0DUB5), TCSR3_PARS9 (T0CUB8)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
HLDE_STRCO (Q9Z5B5) |
| PDB [Detailed view] |
179 PDB
1SIG; 3IYD; 4JK1; 4JK2; 4JKR; 4KMU; 4KN4; 4KN7; 4LJZ; 4LK0; 4LK1; 4LLG; 4MEX; 4MEY; 4X8K; 4XSX; 4XSY; 4XSZ; 4YFK; 4YFN; 4YFX; 4YG2; 4YLN; 4YLO; 4YLP; 4ZH2; 4ZH3; 4ZH4; 5IPL; 5IPM; 5IPN; 5UAC; 5UAG; 5UAH; 5UAJ; 5UAL; 5UAQ; 5UH5; 5UH6; 5UH8; 5UH9; 5UHA; 5UHB; 5UHC; 5UHD; 5UHE; 5UHF; 5UHG; 5VSW; 5VT0; 5W1S; 5W1T; 6B6H; 6BYU; 6BZO; 6C04; 6C05; 6C06; 6C9Y; 6CA0; 6CUX; 6EDT; 6EE8; 6EEC; 6FBV; 6JNX; 6K4Y; 6KJ6; 6LDI; 6M7J; 6N4C; 6N57; 6N58; 6N62; 6OUL; 6P18; 6P1K; 6PB4; 6PB5; 6PB6; 6PMI; 6PMJ; 6PSQ; 6PSR; 6PSS; 6PST; 6PSU; 6PSV; 6PSW; 6UTV; 6UTW; 6UTX; 6UTY; 6UTZ; 6UU0; 6UU1; 6UU2; 6UU3; 6UU4; 6UU5; 6UU6; 6UU7; 6UU8; 6UU9; 6UUA; 6UUB; 6UUC; 6VJS; 6VVX; 6VVY; 6VVZ; 6VW0; 6WMU; 6XH7; 6XH8; 6XL5; 6XL9; 6XLJ; 6XLL; 6XLM; 7BEF; 7BEG; 7C17; 7C97; 7CHW; 7CKQ; 7DY6; 7F0R; 7F75; 7KHB; 7KHC; 7KHE; 7KHI; 7KIF; 7KIM; 7KIN; 7MKD; 7MKE; 7MKI; 7MKJ; 7N4E; 7PP4; 7Q4U; 7Q59; 7SZJ; 7SZK; 7U22; 7UBM; 7UBN; 7VF9; 7VPZ; 7VWY; 7VWZ; 7W5W; 7W5X; 7W5Y; 7X74; 7X75; 7X76; 7XL3; 7XL4; 7XUI; 7XYA; 7ZF2; 8AD1; 8B3Z; 8GZG; 8GZH; 8H3V; 8H40; 8HIH; 8HKC; 8HVR; 8IGR; 8IGS; 8JKE; 8JO2; 8U3B; 8X6F » more |