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We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
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Amos Bairoch

PROSITE entry PS00715


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PURL: https://purl.expasy.org/prosite/signature/PS00715

Direct ScanProsite submission
General information about the entry

Entry name [info] SIGMA70_1
Accession [info] PS00715
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-NOV-1997 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00592

Name and characterization of the entry

Description [info] Sigma-70 factors family signature 1.
Pattern [info] 
[DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_04 which contains 573'661 sequence entries.


Total number of hits 152 in 152 different sequences
Number of true positive hits 151 in 151 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 13
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.34 %
Recall (true positives / (true positives + false negatives)) 92.07 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 151 sequences 

FLIA_ECO57  (P0AEM8), FLIA_ECOL6  (P0AEM7), FLIA_ECOLI  (P0AEM6), 

FLIA_PSEAE  (P29248), FLIA_SALTI  (P0A2E9), FLIA_SALTY  (P0A2E8), 
FLIA_YEREN  (P52621), HRDA_STRCO  (P18182), HRDC_STRCO  (P18184), 
HRDD_STRCO  (P18249), HRDD_STRGR  (Q59914), HRDD_STRVF  (Q60012), 
RP28_BACAN  (P62182), RP28_BACCR  (P62180), RP28_BACTK  (P62181), 
RP35_BACAN  (P62177), RP35_BACCR  (P62178), RP35_BACTK  (P62179), 
RPOD_AGRFC  (P33452), RPOD_BORBU  (P52323), RPOD_BUCAI  (P57163), 
RPOD_BUCAP  (P32001), RPOD_BUCBP  (Q89B10), RPOD_CAUVC  (P52324), 
RPOD_COXBU  (Q83BB6), RPOD_ECOLI  (P00579), RPOD_HAEIN  (P43766), 
RPOD_HELPJ  (Q9ZMY3), RPOD_HELPY  (P55993), RPOD_LEPIC  (P61540), 
RPOD_LEPIN  (P59117), RPOD_MYXXA  (P17531), RPOD_NEIGO  (P52325), 
RPOD_PSEAE  (P26480), RPOD_PSEPH  (P52326), RPOD_PSEPU  (P52327), 
RPOD_RHIEC  (Q2K619), RPOD_RHIME  (Q59753), RPOD_RHOCA  (P0CZ15), 
RPOD_RHOCB  (D5AQI9), RPOD_RICBR  (Q1RKH7), RPOD_RICCN  (Q92FZ8), 
RPOD_RICFE  (Q4UJT1), RPOD_RICPR  (P33451), RPOD_RICTY  (Q68VQ5), 
RPOD_SALTI  (P0A2E4), RPOD_SALTY  (P0A2E3), RPOD_SERMA  (P43344), 
RPOD_SHEVD  (O24744), RPOD_TREPA  (O83506), RPOD_XANAC  (Q8PG33), 
RPOD_XANCP  (Q8P4H2), RPOD_XYLFA  (Q9PDM9), RPOD_XYLFT  (Q87DT7), 
RPOF_KITAU  (P37970), RPOF_STRCO  (P37971), RPOH_BUCAI  (O05385), 
RPOH_BUCAP  (Q8KA76), RPOH_BUCBP  (Q89B27), RPOH_CAUVC  (P0CAW9), 
RPOH_CAUVN  (B8H3C3), RPOH_CITFR  (P11539), RPOH_ECO57  (P0AGB5), 
RPOH_ECOL6  (P0AGB4), RPOH_ECOLI  (P0AGB3), RPOH_ENTCL  (P50508), 
RPOH_HAEIN  (P44404), RPOH_PROMI  (P50509), RPOH_PSEAE  (P42378), 
RPOH_RHIRD  (P50507), RPOH_SERMA  (P50510), RPOH_VIBCH  (P50511), 
RPOH_VIBVU  (Q8DD54), RPOH_ZYMMO  (P50512), RPOS_COXBU  (Q9KI19), 
RPOS_ECOLI  (P13445), RPOS_PSEAE  (P45684), RPOS_SALDU  (P0A2E7), 
RPOS_SALT1  (D0ZVL4), RPOS_SALTI  (P0A2E6), RPOS_SALTU  (F5ZTT9), 
RPOS_SALTY  (P0DM81), RPOS_SHIFL  (P35540), RPOS_VIBCH  (O51804), 
RPOS_YEREN  (P47765), RPSB_BACAN  (Q9K5J6), RPSB_CORDI  (P33118), 
RPSB_MYXXA  (P19433), RPSB_NOSS1  (Q03065), RPSB_STIAD  (Q01624), 
RPSC_NOSS1  (Q03066), RPSC_SYNY3  (Q59996), RPSD_BACSU  (P10726), 
RPSE_BACSU  (P06222), RPSE_CLOAB  (P33657), RPSF_BACLI  (P26764), 
RPSF_BACSU  (P07860), RPSF_PRIMG  (P35145), RPSG_BACSU  (P19940), 
RPSG_CLOAB  (P33658), RPSH_BACLI  (P02964), RPSH_BACSU  (P17869), 
RPSK_BACSU  (P12254), RPSW_STRCO  (P17211), RPSX_BACTK  (P26768), 
SIGA1_SYNE7 (P38023), SIGA2_SYNE7 (Q31ME3), SIGA4_SYNE7 (Q31QR8), 
SIGA_ARATH  (O24629), SIGA_BACSP  (P52328), SIGA_BACSU  (P06224), 
SIGA_CHLMU  (P56835), SIGA_CHLPN  (Q9Z7F0), SIGA_CHLTR  (P18333), 
SIGA_CLOAB  (P33656), SIGA_ENTFA  (P52329), SIGA_HALH5  (O66381), 
SIGA_KITAU  (P27785), SIGA_LACLA  (Q04506), SIGA_LACLC  (P58290), 
SIGA_LISIN  (Q92BQ6), SIGA_LISMO  (P52331), SIGA_MICAE  (P52322), 
SIGA_MYCBO  (P0A603), SIGA_MYCGE  (P47491), SIGA_MYCPN  (P78022), 
SIGA_MYCTO  (P9WGI0), SIGA_MYCTU  (P9WGI1), SIGA_NOSS1  (P26683), 
SIGA_ORYSJ  (Q0J7T6), SIGA_STAA8  (P0A0J0), SIGA_STAAC  (Q5HFJ9), 
SIGA_STAAM  (P0A0I8), SIGA_STAAN  (Q99TT5), SIGA_STAAR  (Q6GGD8), 
SIGA_STAAS  (Q6G905), SIGA_STAAW  (P0A0I9), SIGA_STAEQ  (Q5HNY7), 
SIGA_STAES  (Q8CP24), SIGA_STRCO  (P18183), SIGA_STRGG  (B1VXR4), 
SIGA_STRGR  (P77951), SIGA_STRMU  (O33662), SIGA_STRPN  (P0A4I9), 
SIGA_STRR6  (P0A4J0), SIGA_SYNY3  (P74565), SIGA_THEMA  (P77994), 
SIGB_MYCTO  (P9WGI4), SIGB_MYCTU  (P9WGI5), SIGD_ARATH  (Q9ZSL6), 
SIGF_ARATH  (Q9LD95)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

LAFS_VIBPA  (Q03474), RPSB_BACSU  (P06574), RPSC_MYXXA  (Q07083), 

SHBA_STRGG  (B1W3T1), SIGA3_SYNE7 (Q31QG5), SIGA_THEAQ  (Q9EZJ8), 
SIGA_THET2  (Q72L95), SIGI_BACAN  (P0DO98), SIGI_BACSU  (O31654), 
SIGO_BACSU  (O34843), TCSR1_PARSO (V5T8H7), TCSR2_PARSO (P0DUB5), 
TCSR3_PARS9 (T0CUB8)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

HLDE_STRCO  (Q9Z5B5)


				
	

	

		PDB
[Detailed view]		
		
			191 PDB
			


			pdb_00001sig; pdb_00003iyd; pdb_00004jk1; pdb_00004jk2; pdb_00004jkr; pdb_00004kmu; pdb_00004kn4; pdb_00004kn7; pdb_00004ljz; pdb_00004lk0; pdb_00004lk1; pdb_00004llg; 
			
				pdb_00004mex; pdb_00004mey; pdb_00004x8k; pdb_00004xsx; pdb_00004xsy; pdb_00004xsz; pdb_00004yfk; pdb_00004yfn; pdb_00004yfx; pdb_00004yg2; pdb_00004yln; pdb_00004ylo; 
				pdb_00004ylp; pdb_00004zh2; pdb_00004zh3; pdb_00004zh4; pdb_00005ipl; pdb_00005ipm; pdb_00005ipn; pdb_00005uac; pdb_00005uag; pdb_00005uah; pdb_00005uaj; pdb_00005ual; 
				pdb_00005uaq; pdb_00005uh5; pdb_00005uh6; pdb_00005uh8; pdb_00005uh9; pdb_00005uha; pdb_00005uhb; pdb_00005uhc; pdb_00005uhd; pdb_00005uhe; pdb_00005uhf; pdb_00005uhg; 
				pdb_00005vsw; pdb_00005vt0; pdb_00005w1s; pdb_00005w1t; pdb_00006b6h; pdb_00006byu; pdb_00006bzo; pdb_00006c04; pdb_00006c05; pdb_00006c06; pdb_00006c9y; pdb_00006ca0; 
				pdb_00006cux; pdb_00006edt; pdb_00006ee8; pdb_00006eec; pdb_00006fbv; pdb_00006jnx; pdb_00006k4y; pdb_00006kj6; pdb_00006ldi; pdb_00006m7j; pdb_00006n4c; pdb_00006n57; 
				pdb_00006n58; pdb_00006n62; pdb_00006oul; pdb_00006p18; pdb_00006p1k; pdb_00006pb4; pdb_00006pb5; pdb_00006pb6; pdb_00006pmi; pdb_00006pmj; pdb_00006psq; pdb_00006psr; 
				pdb_00006pss; pdb_00006pst; pdb_00006psu; pdb_00006psv; pdb_00006psw; pdb_00006utv; pdb_00006utw; pdb_00006utx; pdb_00006uty; pdb_00006utz; pdb_00006uu0; pdb_00006uu1; 
				pdb_00006uu2; pdb_00006uu3; pdb_00006uu4; pdb_00006uu5; pdb_00006uu6; pdb_00006uu7; pdb_00006uu8; pdb_00006uu9; pdb_00006uua; pdb_00006uub; pdb_00006uuc; pdb_00006vjs; 
				pdb_00006vvx; pdb_00006vvy; pdb_00006vvz; pdb_00006vw0; pdb_00006wmu; pdb_00006xh7; pdb_00006xh8; pdb_00006xl5; pdb_00006xl9; pdb_00006xlj; pdb_00006xll; pdb_00006xlm; 
				pdb_00007bef; pdb_00007beg; pdb_00007c17; pdb_00007c97; pdb_00007chw; pdb_00007ckq; pdb_00007dy6; pdb_00007f0r; pdb_00007f75; pdb_00007khb; pdb_00007khc; pdb_00007khe; 
				pdb_00007khi; pdb_00007kif; pdb_00007kim; pdb_00007kin; pdb_00007mkd; pdb_00007mke; pdb_00007mki; pdb_00007mkj; pdb_00007n4e; pdb_00007pp4; pdb_00007q4u; pdb_00007q59; 
				pdb_00007szj; pdb_00007szk; pdb_00007u22; pdb_00007ubm; pdb_00007ubn; pdb_00007vf9; pdb_00007vpz; pdb_00007vwy; pdb_00007vwz; pdb_00007w5w; pdb_00007w5x; pdb_00007w5y; 
				pdb_00007x74; pdb_00007x75; pdb_00007x76; pdb_00007xl3; pdb_00007xl4; pdb_00007xui; pdb_00007xya; pdb_00007zf2; pdb_00008ad1; pdb_00008b3z; pdb_00008ftd; pdb_00008gzg; 
				pdb_00008gzh; pdb_00008h3v; pdb_00008h40; pdb_00008hih; pdb_00008hkc; pdb_00008hvr; pdb_00008igr; pdb_00008igs; pdb_00008jke; pdb_00008jo2; pdb_00008k59; pdb_00008k60; 
				pdb_00008to1; pdb_00008to6; pdb_00008to8; pdb_00008toe; pdb_00008tom; pdb_00008u3b; pdb_00008vjl; pdb_00008vjm; pdb_00008x6f; pdb_00008xa7; pdb_00008y6u
			
			

			» more