PROSITE entry PS00716
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General information about the entry
| Entry name [info] | SIGMA70_2 |
| Accession [info] | PS00716 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1992 CREATED;
01-DEC-2004 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00592 |
Name and characterization of the entry
| Description [info] | Sigma-70 factors family signature 2. |
| Pattern [info] |
[STN]-x(2)-[DENQ]-[LIVMT]-[GAS]-x(4)-[LIVMF]-[PSTG]-x(3)-[LIVMA]-x-[NQR]- [LIVMA]-[EQH]-x(3)-[LIVMFWK]-x(2)-[LIVM]. |
Numerical results [info]
| Total number of hits | 144 in 144 different sequences |
| Number of true positive hits | 144 in 144 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 18 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 88.89 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
144 sequences
FLIA_ECO57 (P0AEM8), FLIA_ECOL6 (P0AEM7), FLIA_ECOLI (P0AEM6), FLIA_SALTI (P0A2E9), FLIA_SALTY (P0A2E8), FLIA_YEREN (P52621), HRDA_STRCO (P18182), HRDC_STRCO (P18184), HRDD_STRCO (P18249), HRDD_STRGR (Q59914), HRDD_STRVF (Q60012), LAFS_VIBPA (Q03474), RP28_BACAN (P62182), RP28_BACCR (P62180), RP28_BACTK (P62181), RP35_BACAN (P62177), RP35_BACCR (P62178), RP35_BACTK (P62179), RPOD_AGRFC (P33452), RPOD_BORBU (P52323), RPOD_BUCAI (P57163), RPOD_BUCAP (P32001), RPOD_BUCBP (Q89B10), RPOD_CAUVC (P52324), RPOD_COXBU (Q83BB6), RPOD_ECOLI (P00579), RPOD_HAEIN (P43766), RPOD_HELPJ (Q9ZMY3), RPOD_HELPY (P55993), RPOD_LEPIC (P61540), RPOD_LEPIN (P59117), RPOD_MYXXA (P17531), RPOD_NEIGO (P52325), RPOD_PSEAE (P26480), RPOD_PSEPH (P52326), RPOD_PSEPU (P52327), RPOD_RHIEC (Q2K619), RPOD_RHIME (Q59753), RPOD_RHOCA (P0CZ15), RPOD_RHOCB (D5AQI9), RPOD_RICBR (Q1RKH7), RPOD_RICCN (Q92FZ8), RPOD_RICFE (Q4UJT1), RPOD_RICPR (P33451), RPOD_RICTY (Q68VQ5), RPOD_SALTI (P0A2E4), RPOD_SALTY (P0A2E3), RPOD_SERMA (P43344), RPOD_SHEVD (O24744), RPOD_TREPA (O83506), RPOD_XANAC (Q8PG33), RPOD_XANCP (Q8P4H2), RPOD_XYLFA (Q9PDM9), RPOD_XYLFT (Q87DT7), RPOH_BUCAI (O05385), RPOH_BUCBP (Q89B27), RPOH_CAUVC (P0CAW9), RPOH_CAUVN (B8H3C3), RPOH_CITFR (P11539), RPOH_ECO57 (P0AGB5), RPOH_ECOL6 (P0AGB4), RPOH_ECOLI (P0AGB3), RPOH_ENTCL (P50508), RPOH_HAEIN (P44404), RPOH_PROMI (P50509), RPOH_PSEAE (P42378), RPOH_RHIRD (P50507), RPOH_SERMA (P50510), RPOH_VIBCH (P50511), RPOH_VIBVU (Q8DD54), RPOH_ZYMMO (P50512), RPOS_ECOLI (P13445), RPOS_PSEAE (P45684), RPOS_SALDU (P0A2E7), RPOS_SALT1 (D0ZVL4), RPOS_SALTI (P0A2E6), RPOS_SALTU (F5ZTT9), RPOS_SALTY (P0DM81), RPOS_SHIFL (P35540), RPOS_VIBCH (O51804), RPOS_YEREN (P47765), RPSB_BACSU (P06574), RPSB_CORDI (P33118), RPSB_MYXXA (P19433), RPSB_NOSS1 (Q03065), RPSB_STIAD (Q01624), RPSC_MYXXA (Q07083), RPSC_NOSS1 (Q03066), RPSC_SYNY3 (Q59996), RPSD_BACSU (P10726), RPSE_BACSU (P06222), RPSE_CLOAB (P33657), RPSF_BACLI (P26764), RPSF_BACSU (P07860), RPSF_PRIMG (P35145), RPSG_BACSU (P19940), RPSG_CLOAB (P33658), RPSK_BACSU (P12254), RPSW_STRCO (P17211), SIGA1_SYNE7 (P38023), SIGA4_SYNE7 (Q31QR8), SIGA_BACSP (P52328), SIGA_BACSU (P06224), SIGA_CHLMU (P56835), SIGA_CHLPN (Q9Z7F0), SIGA_CHLTR (P18333), SIGA_CLOAB (P33656), SIGA_ENTFA (P52329), SIGA_HALH5 (O66381), SIGA_KITAU (P27785), SIGA_LACLA (Q04506), SIGA_LACLC (P58290), SIGA_LISIN (Q92BQ6), SIGA_LISMO (P52331), SIGA_MICAE (P52322), SIGA_MYCBO (P0A603), SIGA_MYCGE (P47491), SIGA_MYCPN (P78022), SIGA_MYCTO (P9WGI0), SIGA_MYCTU (P9WGI1), SIGA_NOSS1 (P26683), SIGA_STAA8 (P0A0J0), SIGA_STAAC (Q5HFJ9), SIGA_STAAM (P0A0I8), SIGA_STAAN (Q99TT5), SIGA_STAAR (Q6GGD8), SIGA_STAAS (Q6G905), SIGA_STAAW (P0A0I9), SIGA_STAEQ (Q5HNY7), SIGA_STAES (Q8CP24), SIGA_STRCO (P18183), SIGA_STRGG (B1VXR4), SIGA_STRGR (P77951), SIGA_STRMU (O33662), SIGA_STRPN (P0A4I9), SIGA_STRR6 (P0A4J0), SIGA_SYNY3 (P74565), SIGA_THEAQ (Q9EZJ8), SIGA_THEMA (P77994), SIGA_THET2 (Q72L95), SIGB_ARATH (O22056), SIGB_MYCTO (P9WGI4), SIGB_MYCTU (P9WGI5), SIGF_ARATH (Q9LD95)» more
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| UniProtKB/Swiss-Prot False negative sequences |
18 sequences
FLIA_PSEAE (P29248), RPOF_KITAU (P37970), RPOF_STRCO (P37971), RPOH_BUCAP (Q8KA76), RPOS_COXBU (Q9KI19), RPSB_BACAN (Q9K5J6), RPSH_BACLI (P02964), RPSH_BACSU (P17869), RPSX_BACTK (P26768), SHBA_STRGG (B1W3T1), SIGA2_SYNE7 (Q31ME3), SIGA3_SYNE7 (Q31QG5), SIGI_BACAN (P0DO98), SIGI_BACSU (O31654), SIGO_BACSU (O34843), TCSR1_PAESO (V5T8H7), TCSR2_PAESO (P0DUB5), TCSR3_PAES9 (T0CUB8)» more |
| PDB [Detailed view] |
198 PDB
1IW7; 1KU3; 1KU7; 1L9U; 1L9Z; 1RIO; 1SMY; 1TLH; 1TTY; 2P7V; 3IYD; 3N97; 3T72; 4G6D; 4G8X; 4G94; 4JK1; 4JK2; 4JKR; 4KMU; 4KN4; 4KN7; 4LJZ; 4LK0; 4LK1; 4LLG; 4MEX; 4MEY; 4XLN; 4XLP; 4XLQ; 4XLR; 4XLS; 4XSX; 4XSY; 4XSZ; 4YFK; 4YFN; 4YFX; 4YG2; 4YLN; 4YLO; 4YLP; 4ZH2; 4ZH3; 4ZH4; 5IPL; 5IPM; 5IPN; 5TJG; 5UAC; 5UAG; 5UAH; 5UAJ; 5UAL; 5UAQ; 5UH5; 5UH6; 5UH8; 5UH9; 5UHA; 5UHB; 5UHC; 5UHD; 5UHE; 5UHF; 5UHG; 5VSW; 5VT0; 5W1S; 5W1T; 6B6H; 6BYU; 6BZO; 6C04; 6C05; 6C06; 6C9Y; 6CA0; 6CUX; 6EDT; 6EE8; 6EEC; 6FBV; 6FI7; 6IDO; 6JNX; 6K4Y; 6KJ6; 6LDI; 6M7J; 6N4C; 6N57; 6N58; 6N62; 6ONO; 6ONU; 6OUL; 6P18; 6P1K; 6PB4; 6PB5; 6PB6; 6PMI; 6PMJ; 6PSQ; 6PSR; 6PSS; 6PST; 6PSU; 6PSV; 6PSW; 6UTV; 6UTW; 6UTX; 6UTY; 6UTZ; 6UU0; 6UU1; 6UU2; 6UU3; 6UU4; 6UU5; 6UU6; 6UU7; 6UU8; 6UU9; 6UUA; 6UUB; 6UUC; 6VJS; 6VVX; 6VVY; 6VVZ; 6VW0; 6WMU; 6XH7; 6XH8; 6XL5; 6XL9; 6XLJ; 6XLL; 6XLM; 7BEF; 7BEG; 7C17; 7C97; 7CHW; 7CKQ; 7DY6; 7F0R; 7F75; 7KHB; 7KHC; 7KHE; 7KHI; 7KIF; 7KIM; 7KIN; 7KUF; 7KUG; 7MKD; 7MKE; 7MKI; 7MKJ; 7N4E; 7PP4; 7Q4U; 7Q59; 7SZJ; 7SZK; 7U22; 7UBM; 7UBN; 7VF9; 7VPZ; 7VWY; 7VWZ; 7W5W; 7W5X; 7W5Y; 7X74; 7X75; 7X76; 7XL3; 7XL4; 7XUI; 7XYA; 8AD1; 8CWR; 8CWT; 8D5V; 8GZG; 8GZH; 8HIH; 8HKC; 8IGR; 8IGS » more |