PROSITE entry PS00716

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General information about the entry

Entry name [info]	SIGMA70_2
Accession [info]	PS00716
Entry type [info]	PATTERN
Date [info]	01-DEC-1992 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00592

Name and characterization of the entry

Description [info]	Sigma-70 factors family signature 2.
Pattern [info]	[STN]-x(2)-[DENQ]-[LIVMT]-[GAS]-x(4)-[LIVMF]-[PSTG]-x(3)-[LIVMA]-x-[NQR]- [LIVMA]-[EQH]-x(3)-[LIVMFWK]-x(2)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	144 in 144 different sequences
Number of true positive hits	144 in 144 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	18
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	88.89 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

144 sequences

FLIA_ECO57  (P0AEM8), FLIA_ECOL6  (P0AEM7), FLIA_ECOLI  (P0AEM6),

FLIA_SALTI  (P0A2E9), FLIA_SALTY  (P0A2E8), FLIA_YEREN  (P52621), 
HRDA_STRCO  (P18182), HRDC_STRCO  (P18184), HRDD_STRCO  (P18249), 
HRDD_STRGR  (Q59914), HRDD_STRVF  (Q60012), LAFS_VIBPA  (Q03474), 
RP28_BACAN  (P62182), RP28_BACCR  (P62180), RP28_BACTK  (P62181), 
RP35_BACAN  (P62177), RP35_BACCR  (P62178), RP35_BACTK  (P62179), 
RPOD_AGRFC  (P33452), RPOD_BORBU  (P52323), RPOD_BUCAI  (P57163), 
RPOD_BUCAP  (P32001), RPOD_BUCBP  (Q89B10), RPOD_CAUVC  (P52324), 
RPOD_COXBU  (Q83BB6), RPOD_ECOLI  (P00579), RPOD_HAEIN  (P43766), 
RPOD_HELPJ  (Q9ZMY3), RPOD_HELPY  (P55993), RPOD_LEPIC  (P61540), 
RPOD_LEPIN  (P59117), RPOD_MYXXA  (P17531), RPOD_NEIGO  (P52325), 
RPOD_PSEAE  (P26480), RPOD_PSEPH  (P52326), RPOD_PSEPU  (P52327), 
RPOD_RHIEC  (Q2K619), RPOD_RHIME  (Q59753), RPOD_RHOCA  (P0CZ15), 
RPOD_RHOCB  (D5AQI9), RPOD_RICBR  (Q1RKH7), RPOD_RICCN  (Q92FZ8), 
RPOD_RICFE  (Q4UJT1), RPOD_RICPR  (P33451), RPOD_RICTY  (Q68VQ5), 
RPOD_SALTI  (P0A2E4), RPOD_SALTY  (P0A2E3), RPOD_SERMA  (P43344), 
RPOD_SHEVD  (O24744), RPOD_TREPA  (O83506), RPOD_XANAC  (Q8PG33), 
RPOD_XANCP  (Q8P4H2), RPOD_XYLFA  (Q9PDM9), RPOD_XYLFT  (Q87DT7), 
RPOH_BUCAI  (O05385), RPOH_BUCBP  (Q89B27), RPOH_CAUVC  (P0CAW9), 
RPOH_CAUVN  (B8H3C3), RPOH_CITFR  (P11539), RPOH_ECO57  (P0AGB5), 
RPOH_ECOL6  (P0AGB4), RPOH_ECOLI  (P0AGB3), RPOH_ENTCL  (P50508), 
RPOH_HAEIN  (P44404), RPOH_PROMI  (P50509), RPOH_PSEAE  (P42378), 
RPOH_RHIRD  (P50507), RPOH_SERMA  (P50510), RPOH_VIBCH  (P50511), 
RPOH_VIBVU  (Q8DD54), RPOH_ZYMMO  (P50512), RPOS_ECOLI  (P13445), 
RPOS_PSEAE  (P45684), RPOS_SALDU  (P0A2E7), RPOS_SALT1  (D0ZVL4), 
RPOS_SALTI  (P0A2E6), RPOS_SALTU  (F5ZTT9), RPOS_SALTY  (P0DM81), 
RPOS_SHIFL  (P35540), RPOS_VIBCH  (O51804), RPOS_YEREN  (P47765), 
RPSB_BACSU  (P06574), RPSB_CORDI  (P33118), RPSB_MYXXA  (P19433), 
RPSB_NOSS1  (Q03065), RPSB_STIAD  (Q01624), RPSC_MYXXA  (Q07083), 
RPSC_NOSS1  (Q03066), RPSC_SYNY3  (Q59996), RPSD_BACSU  (P10726), 
RPSE_BACSU  (P06222), RPSE_CLOAB  (P33657), RPSF_BACLI  (P26764), 
RPSF_BACSU  (P07860), RPSF_PRIMG  (P35145), RPSG_BACSU  (P19940), 
RPSG_CLOAB  (P33658), RPSK_BACSU  (P12254), RPSW_STRCO  (P17211), 
SIGA1_SYNE7 (P38023), SIGA4_SYNE7 (Q31QR8), SIGA_BACSP  (P52328), 
SIGA_BACSU  (P06224), SIGA_CHLMU  (P56835), SIGA_CHLPN  (Q9Z7F0), 
SIGA_CHLTR  (P18333), SIGA_CLOAB  (P33656), SIGA_ENTFA  (P52329), 
SIGA_HALH5  (O66381), SIGA_KITAU  (P27785), SIGA_LACLA  (Q04506), 
SIGA_LACLC  (P58290), SIGA_LISIN  (Q92BQ6), SIGA_LISMO  (P52331), 
SIGA_MICAE  (P52322), SIGA_MYCBO  (P0A603), SIGA_MYCGE  (P47491), 
SIGA_MYCPN  (P78022), SIGA_MYCTO  (P9WGI0), SIGA_MYCTU  (P9WGI1), 
SIGA_NOSS1  (P26683), SIGA_STAA8  (P0A0J0), SIGA_STAAC  (Q5HFJ9), 
SIGA_STAAM  (P0A0I8), SIGA_STAAN  (Q99TT5), SIGA_STAAR  (Q6GGD8), 
SIGA_STAAS  (Q6G905), SIGA_STAAW  (P0A0I9), SIGA_STAEQ  (Q5HNY7), 
SIGA_STAES  (Q8CP24), SIGA_STRCO  (P18183), SIGA_STRGG  (B1VXR4), 
SIGA_STRGR  (P77951), SIGA_STRMU  (O33662), SIGA_STRPN  (P0A4I9), 
SIGA_STRR6  (P0A4J0), SIGA_SYNY3  (P74565), SIGA_THEAQ  (Q9EZJ8), 
SIGA_THEMA  (P77994), SIGA_THET2  (Q72L95), SIGB_ARATH  (O22056), 
SIGB_MYCTO  (P9WGI4), SIGB_MYCTU  (P9WGI5), SIGF_ARATH  (Q9LD95)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

18 sequences

FLIA_PSEAE  (P29248), RPOF_KITAU  (P37970), RPOF_STRCO  (P37971),

RPOH_BUCAP  (Q8KA76), RPOS_COXBU  (Q9KI19), RPSB_BACAN  (Q9K5J6), 
RPSH_BACLI  (P02964), RPSH_BACSU  (P17869), RPSX_BACTK  (P26768), 
SHBA_STRGG  (B1W3T1), SIGA2_SYNE7 (Q31ME3), SIGA3_SYNE7 (Q31QG5), 
SIGI_BACAN  (P0DO98), SIGI_BACSU  (O31654), SIGO_BACSU  (O34843), 
TCSR1_PARSO (V5T8H7), TCSR2_PARSO (P0DUB5), TCSR3_PARS9 (T0CUB8)

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PDB
[Detailed view]

214 PDB

1IW7; 1KU3; 1KU7; 1L9U; 1L9Z; 1RIO; 1SMY; 1TLH; 1TTY; 2P7V; 3IYD; 3N97; 3T72; 4G6D; 4G8X; 4G94; 4JK1; 4JK2; 4JKR; 4KMU; 4KN4; 4KN7; 4LJZ; 4LK0; 4LK1; 4LLG; 4MEX; 4MEY; 4XLN; 4XLP; 4XLQ; 4XLR; 4XLS; 4XSX; 4XSY; 4XSZ; 4YFK; 4YFN; 4YFX; 4YG2; 4YLN; 4YLO; 4YLP; 4ZH2; 4ZH3; 4ZH4; 5IPL; 5IPM; 5IPN; 5TJG; 5UAC; 5UAG; 5UAH; 5UAJ; 5UAL; 5UAQ; 5UH5; 5UH6; 5UH8; 5UH9; 5UHA; 5UHB; 5UHC; 5UHD; 5UHE; 5UHF; 5UHG; 5VSW; 5VT0; 5W1S; 5W1T; 6B6H; 6BYU; 6BZO; 6C04; 6C05; 6C06; 6C9Y; 6CA0; 6CUX; 6EDT; 6EE8; 6EEC; 6FBV; 6FI7; 6IDO; 6JNX; 6K4Y; 6KJ6; 6LDI; 6M7J; 6N4C; 6N57; 6N58; 6N62; 6ONO; 6ONU; 6OUL; 6P18; 6P1K; 6PB4; 6PB5; 6PB6; 6PMI; 6PMJ; 6PSQ; 6PSR; 6PSS; 6PST; 6PSU; 6PSV; 6PSW; 6UTV; 6UTW; 6UTX; 6UTY; 6UTZ; 6UU0; 6UU1; 6UU2; 6UU3; 6UU4; 6UU5; 6UU6; 6UU7; 6UU8; 6UU9; 6UUA; 6UUB; 6UUC; 6VJS; 6VVX; 6VVY; 6VVZ; 6VW0; 6WMU; 6XH7; 6XH8; 6XL5; 6XL9; 6XLJ; 6XLL; 6XLM; 7BEF; 7BEG; 7C17; 7C97; 7CHW; 7CKQ; 7DY6; 7F0R; 7F75; 7KHB; 7KHC; 7KHE; 7KHI; 7KIF; 7KIM; 7KIN; 7KUF; 7KUG; 7MKD; 7MKE; 7MKI; 7MKJ; 7N4E; 7PP4; 7Q4U; 7Q59; 7SZJ; 7SZK; 7U22; 7UBM; 7UBN; 7VF9; 7VPZ; 7VWY; 7VWZ; 7W5W; 7W5X; 7W5Y; 7X74; 7X75; 7X76; 7XL3; 7XL4; 7XUI; 7XYA; 7ZF2; 8AD1; 8CWR; 8CWT; 8CYF; 8D5V; 8FTD; 8GZG; 8GZH; 8H3V; 8H40; 8HIH; 8HKC; 8HVR; 8IGR; 8IGS; 8JKE; 8JO2; 8K60; 8TO1; 8TO6; 8TO8; 8TOE; 8TOM; 8U3B; 8X6F
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