PROSITE entry PS00723

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General information about the entry

Entry name [info]	POLYPRENYL_SYNTHASE_1
Accession [info]	PS00723
Entry type [info]	PATTERN
Date [info]	01-DEC-1992 CREATED; 01-NOV-1997 DATA UPDATE; 03-MAY-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00407

Name and characterization of the entry

Description [info]	Polyprenyl synthases signature 1.
Pattern [info]	[LIVM](2)-x-D-D-x(2,4)-D-x(4)-R-R-[GH].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_02 which contains 569'516 sequence entries.

Total number of hits	173 in 173 different sequences
Number of true positive hits	173 in 173 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	21
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	89.18 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

173 sequences

ABVS_ASPBC  (A0A1L9UKS1), ASTC_TALWO  (A0A3Q9FFM1), ATMG_ASPFL  (Q672V6    ),

AUAS_ASPUT  (P9WEP0    ), BTCA_COLOR  (N4V6D4    ), BTCA_NEOBT  (A0A2Z6FZ31), 
CGDS_COLGL  (P9WEV7    ), CHRDS_ARTSI (Q7XYS8    ), CHRYS_TANCI (P0C565    ), 
COQ1_NEUCR  (Q7S565    ), COQ1_YARLI  (Q6CBH3    ), COQ1_YEAST  (P18900    ), 
CRTE_CERS4  (P54976    ), CRTE_CYAPA  (P48368    ), CRTE_PANAN  (P21684    ), 
CRTE_PSEVU  (P22873    ), CRTE_RHOCB  (P17060    ), CRTE_SYNP2  (B1XJV9    ), 
DPASD_ARTSH (P9WEX3    ), DPCHD_COLHI (H1VQB1    ), DPFGD_GIBZE (I1RL14    ), 
DPMAD_METAN (P9WEX9    ), DPMPD_MACPH (P9WEW8    ), DPS1_HUMAN  (Q5T2R2    ), 
DPS1_MOUSE  (Q33DR2    ), DPS1_SCHPO  (O43091    ), ERG20_ASPFU (Q4WEB8    ), 
ERG20_CANAL (A0A1D8PH78), ERG20_GANLU (B4YA15    ), ERG20_GIBZE (V6RG22    ), 
ERG20_SCHPO (O14230    ), ERG20_YEAST (P08524    ), ERIE_HERER  (A0A1V0QSA8), 
EVAS_EMEVA  (A0A169T193), EVVS_EMEVA  (A0A0P0ZD79), FC1_PHOAM   (A2PZA5    ), 
FOFS_FUSOX  (P9WER6    ), FPPS1_ARATH (Q09152    ), FPPS1_ARTSI (Q7XYS9    ), 
FPPS1_LUPAL (P49351    ), FPPS1_PARAR (O24241    ), FPPS2_ARATH (Q43315    ), 
FPPS2_ARTSI (Q7XYT0    ), FPPS2_LUPAL (P49352    ), FPPS2_PARAR (O24242    ), 
FPPS_ARTAN  (P49350    ), FPPS_BOVIN  (Q8WMY2    ), FPPS_CHICK  (P08836    ), 
FPPS_GIBFU  (Q92235    ), FPPS_HELAN  (O64905    ), FPPS_HUMAN  (P14324    ), 
FPPS_KLULA  (P49349    ), FPPS_MAIZE  (P49353    ), FPPS_MOUSE  (Q920E5    ), 
FPPS_MURHI  (A0A343W970), FPPS_MYCBO  (P0A5H9    ), FPPS_MYCTO  (P9WKH0    ), 
FPPS_MYCTU  (P9WKH1    ), FPPS_NEUCR  (Q92250    ), FPPS_NEZVI  (A0A386JVA3), 
FPPS_RAT    (P05369    ), FPS_DICDI   (Q9NH03    ), FPS_PANGI   (Q4JHN6    ), 
GA5_GIBF5   (S0E627    ), GFDPS_LEUCN (A0A0U3BRC5), GFPPS_MYCTU (O53507    ), 
GFPS_AERPX  (Q9UWR6    ), GFPS_NATPD  (Q3IPL1    ), GGDPS_MELLI (A0A858E6N7), 
GGDPS_MELLP (A0A858E7G0), GGPP1_ARATH (P34802    ), GGPP2_ARATH (O04046    ), 
GGPP3_ARATH (Q9LUD9    ), GGPP4_ARATH (Q9SLG2    ), GGPP6_ARATH (O22043    ), 
GGPP7_ARATH (Q9ZU77    ), GGPP8_ARATH (Q9LRR0    ), GGPP9_ARATH (Q9LUE1    ), 
GGPPA_ARATH (Q9LJY2    ), GGPPB_ARATH (Q9LIA0    ), GGPPC_ARATH (Q9LHR4    ), 
GGPPS_ASHGO (Q758K0    ), GGPPS_BOVIN (P56966    ), GGPPS_CAPAN (P80042    ), 
GGPPS_CATRO (Q42698    ), GGPPS_DICDI (Q54BK1    ), GGPPS_GEOAI (A0A0A7GEY4), 
GGPPS_GIBFU (Q92236    ), GGPPS_HEVBR (Q94ID7    ), GGPPS_HUMAN (O95749    ), 
GGPPS_MOUSE (Q9WTN0    ), GGPPS_MUCCL (Q9P885    ), GGPPS_MYCTU (O50410    ), 
GGPPS_NEUCR (P24322    ), GGPPS_RAT   (Q6F596    ), GGPPS_SCHPO (O59703    ), 
GGPPS_SINAL (Q43133    ), GGPPS_YEAST (Q12051    ), GGPP_METMA  (Q8PW34    ), 
GGPS_SACS2  (P95999    ), GGPS_SULAC  (P39464    ), GGR_ARATH   (Q39108    ), 
GGS1_HYPPI  (A0A2I6PJ05), GGS2_ZYMTI  (F9WWF1    ), GGS3_ZYMTI  (F9XLC1    ), 
GGS4_PHOAM  (B2DBE9    ), GGS_NEOBT   (Q6F5E6    ), GSS1_ZYMTI  (F9WZD2    ), 
HEPS2_BACSU (P31114    ), HEPS2_GEOSE (P55785    ), HEXB_MICLU  (O66129    ), 
IDSA_METJA  (Q58270    ), IDSA_METTH  (O26156    ), IDSA_METTM  (Q53479    ), 
IDTG_CLAPA  (J7FIX8    ), ISPA_AQUAE  (O66952    ), ISPA_BACSU  (P54383    ), 
ISPA_BRADU  (Q45220    ), ISPA_BUCAI  (P57537    ), ISPA_BUCAP  (Q8K9A0    ), 
ISPA_ECOLI  (P22939    ), ISPA_GEOSE  (Q08291    ), ISPA_HAEIN  (P45204    ), 
ISPA_MICLU  (O66126    ), ISPA_SINFN  (P55539    ), ISPB_ECOLI  (P0AD57    ), 
ISPB_HAEIN  (P44916    ), ISPB_SHIFL  (P0AD58    ), JANG_PENJA  (A0A0E3D8M9), 
LTMG_EPIFF  (Q56RZ3    ), LTMG_EPIFI  (Q56RZ7    ), MPMS_MACPH  (K2SUY0    ), 
NFSS_NEOFI  (A1DN30    ), OBLA_ASPCI  (A0A0U5G0B1), OBLA_ASPCL  (A1C8C3    ), 
OBLA_COCH5  (M2V8C1    ), OLCC_PENCN  (P9WEQ2    ), PAPS_PHOAM  (P9WEV6    ), 
PAXG_PENPX  (Q9C446    ), PBCB_EMENI  (A0A1U8QLG8), PBSS_PENBI  (A0A2Z6AQX7), 
PCCS_PENCH  (A0A348DU52), PCHDS_PENRW (B6HFX8    ), PENG_PENCR  (A0A0E3D8P4), 
PLE4_CLIPA  (A0A2L0VXR5), PLE4_RHOPP  (A0A6S6QJ62), PRDS_PENRF  (W6QAE7    ), 
PREA_CYACA  (Q9TLS1    ), PREA_CYAPA  (P31171    ), PREA_NEOYE  (Q1XDL8    ), 
PREA_PORPU  (P51268    ), PTMG_PENSI  (A0A140JWS2), PVCPS_TALVE (A0A348FUE1), 
PVPS_TALVE  (A0A2Z6AQX6), QNN1_EMEVA  (A0A1Y1C7Q5), SDNC_SORAA  (A0A1B4XBK0), 
SDSA_RHOCA  (O24743    ), SPS1_ARATH  (Q8S948    ), SPS1_ORYSJ  (Q653T6    ), 
SPS2_ARATH  (Q76FS5    ), SPS2_ORYSJ  (Q75HZ9    ), SPS3_ARATH  (Q5HZ00    ), 
SPS3_ORYSJ  (Q0INZ4    ), STLSS_EMEVA (A0A0P0ZEM1), STTA_ASPTE  (P9WEV2    ), 
STTA_ASPTN  (Q0CRW6    ), SUBD_METRA  (E9F5E9    ), TNDC_ASPFV  (A0A8K1AY78), 
TPCA_COCH5  (M2U578    ), TPS_MATON   (A0A7D0AGU9), VRTD_PENAE  (D7PHZ5    ), 
Y8742_DICDI (Q55EU7    ), Y8823_DICDI (Q54XP1    )

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

21 sequences

BSC8_ALTBR  (C9K2Q3    ), COMQ_BACIU  (P0DV08    ), COMQ_BACNB  (D4G0R4    ),

COMQ_BACSC  (P0DV09    ), COMQ_BACSU  (P33690    ), DLP1_HUMAN  (Q86YH6    ), 
DLP1_MOUSE  (Q33DR3    ), DLP1_RAT    (Q5U2R1    ), DLP1_SCHPO  (O13851    ), 
DPS1_DICDI  (Q54VJ9    ), GGS1_PHOAM  (B2DBE8    ), GPPS_IPSPI  (Q58GE8    ), 
GPPS_MYCTU  (O05572    ), HEXPP_SACS2 (Q97W92    ), NPPPS_MYCTU (O06428    ), 
PREA_SYNY3  (P72580    ), TPRT_ASFB7  (Q65164    ), TPRT_ASFK5  (P0C9E2    ), 
TPRT_ASFM2  (Q8V9T7    ), TPRT_ASFP4  (P0C9E0    ), TPRT_ASFWA  (P0C9E1    )

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PDB
[Detailed view]

151 PDB

1FPS; 1RQI; 1RQJ; 1UBV; 1UBW; 1UBX; 1UBY; 1YQ7; 1YV5; 1ZW5; 2DH4; 2E8T; 2E8U; 2E8V; 2E8W; 2E8X; 2E90; 2E91; 2E92; 2E93; 2E94; 2E95; 2F7M; 2F89; 2F8C; 2F8Z; 2F92; 2F94; 2F9K; 2J1P; 2OPM; 2OPN; 2Q80; 2QIS; 2RAH; 2VF6; 2Z4V; 2Z4W; 2Z4X; 2Z4Y; 2Z4Z; 2Z50; 2Z52; 2Z78; 2Z7H; 2Z7I; 2ZEU; 2ZEV; 3APZ; 3AQ0; 3AQB; 3AQC; 3B7L; 3CP6; 3N1V; 3N1W; 3N3L; 3N45; 3N46; 3N49; 3N5H; 3N5J; 3N6K; 3RYE; 3S4J; 4DEM; 4GA3; 4H5C; 4H5D; 4H5E; 4JVJ; 4KFA; 4KK2; 4KPD; 4KPJ; 4KQ5; 4KQS; 4KQU; 4L2X; 4LFV; 4LPG; 4LPH; 4N1Z; 4N9U; 4NFI; 4NFJ; 4NFK; 4NG6; 4NKE; 4NKF; 4NUA; 4OGU; 4P0V; 4P0W; 4P0X; 4PVX; 4PVY; 4Q23; 4QPF; 4QXS; 4RXA; 4XQR; 4XQS; 4XQT; 5AYP; 5CG5; 5CG6; 5DGM; 5DGN; 5DGS; 5DIQ; 5DJP; 5DJR; 5DJV; 5E8H; 5E8K; 5E8L; 5ERN; 5ERO; 5JA0; 5JFQ; 5JUZ; 5JV0; 5JV1; 5JV2; 5KSX; 5YGI; 5ZE6; 5ZLF; 6C56; 6C57; 6G31; 6G32; 6N7Y; 6N7Z; 6N82; 6N83; 6OAG; 6OAH; 6R4V; 6SXL; 6SXN; 6V0K; 7JTH; 7S09; 7S0A; 7S0H; 7S0L; 7S0M; 7WIJ; 8EAX
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