PROSITE entry PS00723

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	POLYPRENYL_SYNTHASE_1
Accession [info]	PS00723
Entry type [info]	PATTERN
Date [info]	01-DEC-1992 CREATED; 01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00407

Name and characterization of the entry

Description [info]	Polyprenyl synthases signature 1.
Pattern [info]	[LIVM](2)-x-D-D-x(2,4)-D-x(4)-R-R-[GH].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	176 in 176 different sequences
Number of true positive hits	176 in 176 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	21
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	89.34 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

176 sequences

ABVS_ASPBC  (A0A1L9UKS1), ASTC_TALWO  (A0A3Q9FFM1), ATMG_ASPFL  (Q672V6),

AUAS_ASPUT  (P9WEP0), BTCA_COLOR  (N4V6D4), BTCA_NEOBT  (A0A2Z6FZ31), 
CGCS_COLGL  (A0A8H4CUY8), CGDS_COLGL  (P9WEV7), CHRDS_ARTSI (Q7XYS8), 
CHRYS_TANCI (P0C565), COQ1_NEUCR  (Q7S565), COQ1_YARLI  (Q6CBH3), 
COQ1_YEAST  (P18900), CRTE_CERS4  (P54976), CRTE_CYAPA  (P48368), 
CRTE_PANAN  (P21684), CRTE_PICP2  (B1XJV9), CRTE_PSEVU  (P22873), 
CRTE_RHOCB  (P17060), DPASD_APISA (P9WEX3), DPCHD_COLHI (H1VQB1), 
DPFGD_GIBZE (I1RL14), DPMAD_METAN (P9WEX9), DPMPD_MACPH (P9WEW8), 
DPS1_HUMAN  (Q5T2R2), DPS1_MOUSE  (Q33DR2), DPS1_SCHPO  (O43091), 
ERG20_ASPFU (Q4WEB8), ERG20_CANAL (A0A1D8PH78), ERG20_GANLU (B4YA15), 
ERG20_GIBZE (V6RG22), ERG20_SCHPO (O14230), ERG20_YEAST (P08524), 
ERIE_HERER  (A0A1V0QSA8), EVAS_EMEVA  (A0A169T193), EVVS_EMEVA  (A0A0P0ZD79), 
FC1_PHOAM   (A2PZA5), FOFS_FUSOX  (P9WER6), FPPS1_ARATH (Q09152), 
FPPS1_ARTSI (Q7XYS9), FPPS1_LUPAL (P49351), FPPS1_PARAR (O24241), 
FPPS2_ARATH (Q43315), FPPS2_ARTSI (Q7XYT0), FPPS2_LUPAL (P49352), 
FPPS2_PARAR (O24242), FPPS_ARTAN  (P49350), FPPS_BOVIN  (Q8WMY2), 
FPPS_CHICK  (P08836), FPPS_GIBFU  (Q92235), FPPS_HELAN  (O64905), 
FPPS_HUMAN  (P14324), FPPS_KLULA  (P49349), FPPS_MAIZE  (P49353), 
FPPS_MOUSE  (Q920E5), FPPS_MURHI  (A0A343W970), FPPS_MYCBO  (P0A5H9), 
FPPS_MYCTO  (P9WKH0), FPPS_MYCTU  (P9WKH1), FPPS_NEUCR  (Q92250), 
FPPS_NEZVI  (A0A386JVA3), FPPS_RAT(P05369), FPS_DICDI   (Q9NH03), 
FPS_PANGI   (Q4JHN6), FUP1_FUSPR  (A0A1L7VFX3), GA5_GIBF5   (S0E627), 
GFDPS_LEUCN (A0A0U3BRC5), GFPPS_MYCTU (O53507), GFPS_AERPX  (Q9UWR6), 
GFPS_NATPD  (Q3IPL1), GGDPS_MELLI (A0A858E6N7), GGDPS_MELLP (A0A858E7G0), 
GGPP1_ARATH (P34802), GGPP2_ARATH (O04046), GGPP3_ARATH (Q9LUD9), 
GGPP4_ARATH (Q9SLG2), GGPP6_ARATH (O22043), GGPP7_ARATH (Q9ZU77), 
GGPP8_ARATH (Q9LRR0), GGPP9_ARATH (Q9LUE1), GGPPA_ARATH (Q9LJY2), 
GGPPB_ARATH (Q9LIA0), GGPPC_ARATH (Q9LHR4), GGPPS_BOVIN (P56966), 
GGPPS_CAPAN (P80042), GGPPS_CATRO (Q42698), GGPPS_DICDI (Q54BK1), 
GGPPS_EREGS (Q758K0), GGPPS_GEOAI (A0A0A7GEY4), GGPPS_GIBFU (Q92236), 
GGPPS_HEVBR (Q94ID7), GGPPS_HUMAN (O95749), GGPPS_MOUSE (Q9WTN0), 
GGPPS_MUCCL (Q9P885), GGPPS_MYCTU (O50410), GGPPS_NEUCR (P24322), 
GGPPS_RAT   (Q6F596), GGPPS_SCHPO (O59703), GGPPS_SINAL (Q43133), 
GGPPS_YEAST (Q12051), GGPP_METMA  (Q8PW34), GGPS_SACS2  (P95999), 
GGPS_SULAC  (P39464), GGR_ARATH   (Q39108), GGS1_HYPPI  (A0A2I6PJ05), 
GGS2_ZYMTI  (F9WWF1), GGS3_ZYMTI  (F9XLC1), GGS4_PHOAM  (B2DBE9), 
GGS_NEOBT   (Q6F5E6), GSS1_ZYMTI  (F9WZD2), HEPS2_BACSU (P31114), 
HEPS2_GEOSE (P55785), HEXB_MICLU  (O66129), IDSA_METJA  (Q58270), 
IDSA_METTH  (O26156), IDSA_METTM  (Q53479), IDTG_CLAPA  (J7FIX8), 
ISPA_AQUAE  (O66952), ISPA_BACSU  (P54383), ISPA_BRADU  (Q45220), 
ISPA_BUCAI  (P57537), ISPA_BUCAP  (Q8K9A0), ISPA_ECOLI  (P22939), 
ISPA_GEOSE  (Q08291), ISPA_HAEIN  (P45204), ISPA_MICLU  (O66126), 
ISPA_SINFN  (P55539), ISPB_ECOLI  (P0AD57), ISPB_HAEIN  (P44916), 
ISPB_SHIFL  (P0AD58), JANG_PENJA  (A0A0E3D8M9), LTMG_EPIFF  (Q56RZ3), 
LTMG_EPIFI  (Q56RZ7), MPMS_MACPH  (K2SUY0), NFSS_NEOFI  (A1DN30), 
OBLA_ASPCI  (A0A0U5G0B1), OBLA_ASPCL  (A1C8C3), OBLA_COCH5  (M2V8C1), 
OLCC_PENCN  (P9WEQ2), PAPS_PHOAM  (P9WEV6), PAXG_PENPX  (Q9C446), 
PBCB_EMENI  (A0A1U8QLG8), PBSS_PENBI  (A0A2Z6AQX7), PCCS_PENCH  (A0A348DU52), 
PCHDS_PENRW (B6HFX8), PENG_PENCR  (A0A0E3D8P4), PLE4_CLIPA  (A0A2L0VXR5), 
PLE4_RHOPP  (A0A6S6QJ62), PRDS_PENRF  (W6QAE7), PREA_CYACA  (Q9TLS1), 
PREA_CYAPA  (P31171), PREA_NEOYE  (Q1XDL8), PREA_PORPU  (P51268), 
PTMG_PENSI  (A0A140JWS2), PVCPS_TALVE (A0A348FUE1), PVPS_TALVE  (A0A2Z6AQX6), 
QNN1_EMEVA  (A0A1Y1C7Q5), SDNC_SORAA  (A0A1B4XBK0), SDSA_RHOCA  (O24743), 
SPS1_ARATH  (Q8S948), SPS1_ORYSJ  (Q653T6), SPS2_ARATH  (Q76FS5), 
SPS2_ORYSJ  (Q75HZ9), SPS3_ARATH  (Q5HZ00), SPS3_ORYSJ  (Q0INZ4), 
STLSS_EMEVA (A0A0P0ZEM1), STTA_ASPTE  (P9WEV2), STTA_ASPTN  (Q0CRW6), 
SUBD_METRA  (E9F5E9), TNDC_ASPFV  (A0A8K1AY78), TPCA_COCH5  (M2U578), 
TPS_MATON   (A0A7D0AGU9), VRCA_ASPA1  (A0A1L9WQI2), VRTD_PENAE  (D7PHZ5), 
Y8742_DICDI (Q55EU7), Y8823_DICDI (Q54XP1)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

21 sequences

BSC8_ALTBR  (C9K2Q3), COMQ_BACIU  (P0DV08), COMQ_BACNB  (D4G0R4),

COMQ_BACSC  (P0DV09), COMQ_BACSU  (P33690), DLP1_HUMAN  (Q86YH6), 
DLP1_MOUSE  (Q33DR3), DLP1_RAT(Q5U2R1), DLP1_SCHPO  (O13851), 
DPS1_DICDI  (Q54VJ9), GGS1_PHOAM  (B2DBE8), GPPS_IPSPI  (Q58GE8), 
GPPS_MYCTU  (O05572), HEXPP_SACS2 (Q97W92), NPPPS_MYCTU (O06428), 
PREA_SYNY3  (P72580), TPRT_ASFB7  (Q65164), TPRT_ASFK5  (P0C9E2), 
TPRT_ASFM2  (Q8V9T7), TPRT_ASFP4  (P0C9E0), TPRT_ASFWA  (P0C9E1)

» more

PDB
[Detailed view]

154 PDB

1FPS; 1RQI; 1RQJ; 1UBV; 1UBW; 1UBX; 1UBY; 1YQ7; 1YV5; 1ZW5; 2DH4; 2E8T; 2E8U; 2E8V; 2E8W; 2E8X; 2E90; 2E91; 2E92; 2E93; 2E94; 2E95; 2F7M; 2F89; 2F8C; 2F8Z; 2F92; 2F94; 2F9K; 2J1P; 2OPM; 2OPN; 2Q80; 2QIS; 2RAH; 2VF6; 2Z4V; 2Z4W; 2Z4X; 2Z4Y; 2Z4Z; 2Z50; 2Z52; 2Z78; 2Z7H; 2Z7I; 2ZEU; 2ZEV; 3APZ; 3AQ0; 3AQB; 3AQC; 3B7L; 3CP6; 3N1V; 3N1W; 3N3L; 3N45; 3N46; 3N49; 3N5H; 3N5J; 3N6K; 3RYE; 3S4J; 4DEM; 4GA3; 4H5C; 4H5D; 4H5E; 4JVJ; 4KFA; 4KK2; 4KPD; 4KPJ; 4KQ5; 4KQS; 4KQU; 4L2X; 4LFV; 4LPG; 4LPH; 4N1Z; 4N9U; 4NFI; 4NFJ; 4NFK; 4NG6; 4NKE; 4NKF; 4NUA; 4OGU; 4P0V; 4P0W; 4P0X; 4PVX; 4PVY; 4Q23; 4QPF; 4QXS; 4RXA; 4XQR; 4XQS; 4XQT; 5AYP; 5CG5; 5CG6; 5DGM; 5DGN; 5DGS; 5DIQ; 5DJP; 5DJR; 5DJV; 5E8H; 5E8K; 5E8L; 5ERN; 5ERO; 5JA0; 5JFQ; 5JUZ; 5JV0; 5JV1; 5JV2; 5KSX; 5YGI; 5ZE6; 5ZLF; 6C56; 6C57; 6G31; 6G32; 6N7Y; 6N7Z; 6N82; 6N83; 6OAG; 6OAH; 6R4V; 6SXL; 6SXN; 6V0K; 7JTH; 7S09; 7S0A; 7S0H; 7S0L; 7S0M; 7WIJ; 8EAX; 8F8F; 8F8K; 8F8L
» more