PROSITE entry PS00725
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General information about the entry
| Entry name [info] | GERMIN |
| Accession [info] | PS00725 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1992 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00597 |
Name and characterization of the entry
| Description [info] | Germin family signature. |
| Pattern [info] |
G-x(4)-H-x-H-P-x-[AGS]-x-E-[LIVM]. |
Numerical results [info]
| Total number of hits | 79 in 79 different sequences |
| Number of true positive hits | 78 in 78 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 12 |
| Number of 'partial' sequences | 11 |
| Precision (true positives / (true positives + false positives)) | 98.73 % |
| Recall (true positives / (true positives + false negatives)) | 86.67 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Site [info] | manganese at position 3 |
| Site [info] | manganese at position 5 |
| Site [info] | manganese at position 10 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
78 sequences
AB19A_PRUPE (Q9ZRA4), AB19B_PRUPE (O04012), ABP20_PRUPE (O04011), GER2_WHEAT (P15290), GER3_WHEAT (P26759), GL110_ARATH (Q9FMA9), GL111_ARATH (Q9FMA8), GL111_ORYSJ (Q2R352), GL112_ARATH (Q9FMA6), GL113_ARATH (P92997), GL114_ARATH (Q9FID0), GL115_ARATH (Q9FIC9), GL116_ARATH (Q9FIC8), GL117_ARATH (Q9FIC6), GL118_ARATH (P92999), GL119_ARATH (Q9FL89), GL11_ARATH (P92998), GL11_ORYSJ (Q7F731), GL120_ARATH (P92996), GL121_ORYSJ (Q2QXJ4), GL122_ORYSJ (Q2QXJ2), GL123_ORYSJ (Q2QXJ1), GL124_ORYSJ (Q2QXJ0), GL12_ORYSJ (Q94JF3), GL13_ARATH (Q9M8X3), GL13_ORYSJ (Q942A8), GL14_ORYSJ (Q942A7), GL15_ARATH (Q9M8X5), GL16_ARATH (Q9M8X6), GL17_ARATH (Q9SFF9), GL18_ARATH (Q9LEA7), GL19_ARATH (Q9FMB0), GL21_ARATH (P94014), GL21_ORYSJ (Q6K5Q0), GL22_ARATH (Q9FZ27), GL22_ORYSJ (Q6K5P9), GL23_ORYSJ (Q6K5P8), GL24_ARATH (Q9M263), GL25_ARATH (O65252), GL31_ARATH (P94040), GL32_ORYSJ (Q7XZY1), GL33_ARATH (P94072), GL33_ORYSJ (Q851J8), GL34_ARATH (Q9FLT3), GL34_ORYSJ (Q851J9), GL35_ORYSJ (Q851K0), GL36_ORYSJ (Q851K1), GL37_ORYSJ (Q10BU2), GL38_ORYSJ (Q75HJ4), GL41_ORYSJ (Q7XSN6), GL52_ORYSJ (Q6I544), GL810_ORYSJ (Q6YZ97), GL811_ORYSJ (Q6YZY5), GL812_ORYSJ (Q6ZCR3), GL813_ORYSJ (Q6Z964), GL814_ORYSJ (Q6ZBZ2), GL81_ORYSJ (Q6YZB2), GL82_ORYSJ (Q6YZA9), GL83_ORYSJ (Q6YZZ7), GL84_ORYSJ (Q6YZZ6), GL85_ORYSJ (Q6YZA6), GL86_ORYSJ (Q6YZA4), GL87_ORYSJ (Q6YZZ2), GL88_ORYSJ (Q6YZA1), GL89_ORYSJ (Q6YZ99), GLP1_BRANA (P46271), GLP1_IPONI (P45853), GLP1_MESCR (P45852), GLP1_MORAL (L8BRS3), GLP1_SINAL (P45854), GLT1_ARATH (P92995), NEC1_NICLS (Q94EG3), NEC1_NICPL (Q9SPV5), OXO1_HORVU (P45850), OXO2_HORVU (P45851), RHRE_PEA(Q9S8P4), SR1A_PHYPO (P09350), SR1B_PHYPO (P09351)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
12 sequences
GL12_ARATH (Q9M8X1), GL14_ARATH (Q9M8X4), GL23_ARATH (P93000), GL24_ORYSJ (Q6ESF0), GL31_ORYSJ (Q8H021), GL32_ARATH (Q9SR72), GL51_ORYSJ (Q688L5), GL91_ORYSJ (Q652Q1), GL92_ORYSJ (Q652Q0), GL93_ORYSJ (Q652P9), GLT2_ARATH (Q9LMC9), GLT3_ARATH (Q9S772)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
11 sequences
ABP_POPEU (P84979), GER1_HORVU (P28525), GER2_HORVU (P28526), GERP_WHEAT (P29532), GLP1_BETPN (P85336), GLP1_CITSI (P84159), GLP1_POPEU (P84978), GLP2_BETPN (P85352), GLP3_BETPN (P85353), GLP4_BETPN (P85354), PRVN_THEPV (C0HJY2)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
YDBB_BACSU (P96597) |
| PDB [Detailed view] |
4 PDB
1FI2; 2ET1; 2ET7; 2ETE |