PROSITE entry PS00726
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General information about the entry
| Entry name [info] | AP_NUCLEASE_F1_1 |
| Accession [info] | PS00726 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1992 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00598 |
Name and characterization of the entry
| Description [info] | AP endonucleases family 1 signature 1. |
| Pattern [info] |
[APF]-D-[LIVMF](2)-{T}-[LIVM]-Q-E-{G}-K.
|
Numerical results [info]
| Total number of hits | 25 in 25 different sequences |
| Number of true positive hits | 25 in 25 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 5 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 83.33 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | metal(?) at position 7 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
25 sequences
APEA_DICDI (P51173), APEX1_BOVIN (P23196), APEX1_DANRE (A0MTA1), APEX1_GORGO (A1YES6), APEX1_HUMAN (P27695), APEX1_MOUSE (P28352), APEX1_PANPA (A1YFZ3), APEX1_PANTR (A2T6Y4), APEX1_PONPY (A2T7I6), APEX1_RAT (P43138), APEX2_BOVIN (Q5E9N9), APEX2_HUMAN (Q9UBZ4), APEX2_MOUSE (Q68G58), APEX2_XENLA (Q6DDT4), APN2_SCHPO (P87175), ARP_ARATH (P45951), EX3_ECOLI (P09030), EX3_HAEIN (P44318), EX3_SALTI (P0A1B0), EX3_SALTY (P0A1A9), EXOA_BACSU (P37454), EXOA_STRPN (P0A2X3), EXOA_STRR6 (P0A2X4), RRP1_DROME (P27864), UREND_METTH (O26314)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
5 sequences
APE1L_ARATH (Q5XF07), APE2_ARATH (F4JNY0), APEX_PLABA (A0A509ADV9), APEX_PLAF7 (O97240), APN2_YEAST (P38207)» more |
| PDB [Detailed view] |
78 PDB
1AKO; 1BIX; 1DE8; 1DE9; 1DEW; 1E9N; 1HD7; 2ISI; 2O3C; 2O3H; 3FZI; 3G00; 3G0A; 3G0R; 3G1K; 3G2C; 3G2D; 3G38; 3G3C; 3G3Y; 3G4T; 3G8V; 3G91; 3GA6; 3U8U; 3W2X; 3W2Y; 4IEM; 4LND; 4QH9; 4QHD; 4QHE; 5CFE; 5CFG; 5DFF; 5DFH; 5DFI; 5DG0; 5WN0; 5WN1; 5WN3; 5WN4; 5WN5; 6BOQ; 6BOS; 6BOT; 6BOU; 6BOW; 6MK3; 6MKK; 6MKM; 6MKO; 6P94; 6W0Q; 6W2P; 6W3L; 6W3N; 6W3Q; 6W3U; 6W43; 6W4I; 6W4T; 6WCD; 7CD5; 7CD6; 7LPG; 7LPH; 7LPI; 7LPJ; 7MCR; 7MEV; 7TC2; 7TC3; 7TR7; 7U50; 8KA3; 8KA4; 8KA5 » more |