Home  |  Contact
Entry: PS00728

General information about the entry

Entry name [info] AP_NUCLEASE_F1_3
Accession [info] PS00728
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-NOV-1995 DATA UPDATE;
10-FEB-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00598

Name and characterization of the entry

Description [info] AP endonucleases family 1 signature 3.
Pattern [info] 
N-x-G-x-R-[LIVM]-D-[LIVMFYH]-x-[LV]-x-S.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_01 which contains 564'277 sequence entries.


Total number of hits 20 in 20 different sequences
Number of true positive hits 20 in 20 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 74.07 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 20 sequences 

APEA_DICDI  (P51173    ), APEX1_BOVIN (P23196    ), APEX1_DANRE (A0MTA1    ), 

APEX1_GORGO (A1YES6    ), APEX1_HUMAN (P27695    ), APEX1_MOUSE (P28352    ), 
APEX1_PANPA (A1YFZ3    ), APEX1_PANTR (A2T6Y4    ), APEX1_PONPY (A2T7I6    ), 
APEX1_RAT   (P43138    ), APN2_YEAST  (P38207    ), ARP_ARATH   (P45951    ), 
EX3_ECOLI   (P09030    ), EX3_HAEIN   (P44318    ), EX3_SALTI   (P0A1B0    ), 
EX3_SALTY   (P0A1A9    ), EXOA_BACSU  (P37454    ), EXOA_STRPN  (P0A2X3    ), 
EXOA_STRR6  (P0A2X4    ), RRP1_DROME  (P27864    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

APE1L_ARATH (Q5XF07    ), APE2_ARATH  (F4JNY0    ), APEX2_BOVIN (Q5E9N9    ), 

APEX2_HUMAN (Q9UBZ4    ), APEX2_MOUSE (Q68G58    ), APN2_SCHPO  (P87175    ), 
UREND_METTH (O26314    )
» more

PDB
[Detailed view]		 51 PDB

1AKO; 1BIX; 1DE8; 1DE9; 1DEW; 1E9N; 1HD7; 2ISI; 2O3C; 2O3H; 3U8U; 4IEM; 4LND; 4QH9; 4QHD; 4QHE; 5CFE; 5CFG; 5DFF; 5DFH; 5DFI; 5DFJ; 5DG0; 5WN0; 5WN1; 5WN2; 5WN3; 5WN4; 5WN5; 6BOQ; 6BOR; 6BOS; 6BOT; 6BOU; 6BOV; 6BOW; 6MK3; 6MKK; 6MKM; 6MKO; 6P93; 6P94; 6W0Q; 6W2P; 6W3L; 6W3N; 6W3Q; 6W3U; 6W43; 6W4I; 6W4T
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission