PROSITE entry PS00729
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General information about the entry
Entry name [info] | AP_NUCLEASE_F2_1 |
Accession [info] | PS00729 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1992 CREATED;
01-DEC-2001 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00599 |
Name and characterization of the entry
Description [info] | AP endonucleases family 2 signature 1. |
Pattern [info] |
H-[GSAD]-x-Y-[LIF]-[LIMN]-N-[LIVMFCAP]-[AGC]. |
Numerical results [info]
Total number of hits | 238 in 238 different sequences |
Number of true positive hits | 233 in 233 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 5 in 5 different sequences |
Number of false negative sequences | 44 |
Number of 'partial' sequences | 2 |
Precision (true positives / (true positives + false positives)) | 97.90 % |
Recall (true positives / (true positives + false negatives)) | 84.12 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Site [info] | zinc at position 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
233 sequences
APN1_CAEEL (Q10002), APN1_PLABA (A0A509ASK2), APN1_PLAF7 (Q8IE02), APN1_SCHPO (P50525), APN1_YEAST (P22936), END4_ACHLI (A9NFH1), END4_ACTP2 (A3MZ76), END4_ACTP7 (B3H0M0), END4_ACTPJ (B0BTA9), END4_AERHH (A0KK26), END4_AERS4 (A4SMZ0), END4_ALIB4 (A8EWW1), END4_ALKCK (Q5WHC2), END4_ANOFW (B7GH81), END4_AQUAE (O67551), END4_AYWBP (Q2NJF9), END4_BACAA (C3P8J1), END4_BACAC (C3LKW3), END4_BACAH (A0RIQ8), END4_BACAN (Q81LV1), END4_BACC0 (B7JN09), END4_BACC2 (B7IYD6), END4_BACC3 (C1ES07), END4_BACC4 (B7HCQ9), END4_BACC7 (B7HPI4), END4_BACCN (A7GSY1), END4_BACCQ (B9IY53), END4_BACCR (Q818H3), END4_BACCZ (Q634Q3), END4_BACFN (Q5LG28), END4_BACFR (Q64WY5), END4_BACHK (Q6HDN3), END4_BACLD (Q65HA0), END4_BACMK (A9VHR4), END4_BACSU (P54476), END4_BACTN (Q89YT0), END4_BACVZ (A7Z6S8), END4_BUCA5 (B8D8T8), END4_BUCAI (P57237), END4_BUCAP (P59058), END4_BUCAT (B8D742), END4_BUCBP (P59496), END4_CAMC1 (A8Z6D9), END4_CAMC5 (A7GW36), END4_CAMHC (A7I010), END4_CHLAA (A9WII8), END4_CHLAB (Q5L798), END4_CHLAD (B8G418), END4_CHLCH (Q3AT74), END4_CHLCV (Q824X6), END4_CHLL2 (B3EEJ7), END4_CHLL3 (Q3B5R5), END4_CHLMU (Q9PJB8), END4_CHLP8 (B3QQA9), END4_CHLPB (B3ELV8), END4_CHLPM (A4SDE2), END4_CHLPN (Q9Z7H3), END4_CHLSY (B9LAM9), END4_CHLT2 (B0B8K0), END4_CHLTA (Q3KL70), END4_CHLTB (B0BA79), END4_CHLTE (Q8KFL0), END4_CHLTR (O84630), END4_CITBB (B5EAS8), END4_CITK8 (A8AE66), END4_DESAH (C0QMG1), END4_DESOH (A8ZSE7), END4_DESPS (Q6ASE4), END4_DESVH (Q72CQ9), END4_DESVV (A1VEI5), END4_DICDI (Q966U0), END4_ECO24 (A7ZNY3), END4_ECO27 (B7UFH5), END4_ECO45 (B7MF74), END4_ECO55 (B7LAI2), END4_ECO57 (P0A6C2), END4_ECO5E (B5YWV0), END4_ECO7I (B7NMX3), END4_ECO81 (B7MX24), END4_ECO8A (B7M507), END4_ECOBW (C4ZU09), END4_ECODH (B1X857), END4_ECOHS (A8A222), END4_ECOK1 (A1AD18), END4_ECOL5 (Q0TFT1), END4_ECOL6 (Q8FFU0), END4_ECOLC (B1IYB0), END4_ECOLI (P0A6C1), END4_ECOLU (B7N5C2), END4_ECOSE (B6I8L0), END4_ECOSM (B1LKQ6), END4_ECOUT (Q1R9R2), END4_EDWI9 (C5BCN2), END4_ENT38 (A4WCJ5), END4_ENTFA (Q834D0), END4_ERWT9 (B2VIH1), END4_ESCF3 (B7LVB9), END4_EXIS2 (B1YL88), END4_GEODF (B9M4N1), END4_GEOKA (Q5KX27), END4_GEOSL (Q74FS7), END4_GEOSM (C6DYE3), END4_GEOSW (C5D4R0), END4_GEOTN (A4IR02), END4_GLAP5 (B8F7D1), END4_HAEDU (Q7VMC4), END4_HALH5 (Q9KD33), END4_HALHL (A1WXM0), END4_HALOH (B8CW79), END4_HERA2 (A9B5N7), END4_KLEP3 (B5XP51), END4_KLEP7 (A6TBP4), END4_LACP7 (A9KNS9), END4_LACPL (Q88VR2), END4_LISIN (Q92BR0), END4_LISMC (C1KV96), END4_LISMF (Q71ZM1), END4_LISMO (Q8Y756), END4_LISW6 (A0AIQ1), END4_LYSSC (B1HTF6), END4_MAGMM (A0L901), END4_MALP2 (Q8EWT2), END4_MESH2 (Q601Y6), END4_MESH7 (Q4A8V0), END4_MESHJ (Q4AAX4), END4_METST (Q2NFM3), END4_MYCBO (P63536), END4_MYCBP (A1KGF0), END4_MYCBT (C1AL03), END4_MYCCT (Q2ST57), END4_MYCGA (Q7NBA9), END4_MYCGE (P47477), END4_MYCLB (B8ZSC5), END4_MYCLE (P30770), END4_MYCMM (B2HSJ8), END4_MYCMS (Q6MUC7), END4_MYCPN (P75457), END4_MYCPU (Q98PU8), END4_MYCS5 (Q4A6S5), END4_MYCTA (A5U056), END4_MYCTO (P9WQ12), END4_MYCTU (P9WQ13), END4_MYCUA (A0PM27), END4_NAUPA (B9L9K0), END4_NITSB (A6Q1P1), END4_OCEIH (Q8EPZ2), END4_OLEA2 (Q30YP7), END4_ONYPE (Q6YQC1), END4_PARD8 (A6LB99), END4_PARUW (Q6MED0), END4_PECAS (Q6D3L8), END4_PECCP (C6DEL1), END4_PELPB (B4SE58), END4_PETMO (A9BJ15), END4_PHOLL (Q7N364), END4_PHOPR (Q6LUP5), END4_PHOV8 (A6L330), END4_PROA2 (B4S3I3), END4_PROMH (B4ETA5), END4_SALA4 (B5EYQ5), END4_SALAR (A9MK49), END4_SALCH (Q57MD6), END4_SALDC (B5FNK8), END4_SALEP (B5R173), END4_SALG2 (B5RC42), END4_SALHS (B4TAM6), END4_SALNS (B4SY37), END4_SALPA (Q5PE50), END4_SALPB (A9N6I5), END4_SALPC (C0Q0T7), END4_SALPK (B5BE34), END4_SALSV (B4TNR0), END4_SALTI (Q8Z593), END4_SALTY (Q8ZNK6), END4_SERP5 (A8GGT5), END4_SHIB3 (B2TVT4), END4_SHIBS (Q31YW6), END4_SHIDS (Q32EQ7), END4_SHIF8 (Q0T2W5), END4_SHIFL (Q83QW6), END4_SHISS (Q3Z047), END4_STAA1 (A7X2V2), END4_STAA2 (A6U229), END4_STAA3 (Q2FGG6), END4_STAA8 (Q2FY16), END4_STAA9 (A5IT85), END4_STAAB (Q2YT22), END4_STAAC (Q5HFK3), END4_STAAE (A6QHA0), END4_STAAM (P63537), END4_STAAN (P63538), END4_STAAR (Q6GGE2), END4_STAAS (Q6G909), END4_STAAT (A8Z497), END4_STAAW (P63539), END4_STACT (B9DNM8), END4_STAEQ (Q5HNZ1), END4_STAES (Q8CP25), END4_STAHJ (Q4L6Q7), END4_STAS1 (Q49Y00), END4_STRAW (Q82AG6), END4_STRCO (Q9S2N2), END4_SULDN (Q30PH2), END4_SULNB (A6QCI0), END4_THEAB (B7IDS7), END4_THEAC (Q9HJS3), END4_THEM4 (A6LMU8), END4_THEMA (Q9WYJ7), END4_THEP1 (A5IK54), END4_THESQ (B1L9C6), END4_THEVO (Q97A09), END4_TOLAT (C4LD49), END4_TRIL1 (B3E325), END4_UREPA (Q9PQI5), END4_UREU1 (B5ZBB4), END4_VIBC1 (A7MS84), END4_VIBC3 (A5F5R6), END4_VIBCH (Q9KPK7), END4_VIBCM (C3LQD2), END4_VIBPA (Q87SC6), END4_VIBVU (Q8DEP6), END4_VIBVY (Q7MNR1), END4_WOLSU (Q7M8B4), END4_YERE8 (A1JLX8), END4_YERP3 (A7FK62), END4_YERPA (Q1C982), END4_YERPB (B2K9J1), END4_YERPE (Q8ZGJ1), END4_YERPG (A9R4S1), END4_YERPN (Q1CG79), END4_YERPP (A4TNA4), END4_YERPS (Q66CR5), END4_YERPY (B1JRM5)» more
|
UniProtKB/Swiss-Prot False negative sequences |
44 sequences
APE_ASFB7 (Q65202), APE_ASFK5 (P0C9C8), APE_ASFM2 (Q65246), APE_ASFP4 (P0C9C6), APE_ASFWA (P0C9C7), END4_AKKM8 (B2UQE3), END4_ALKOO (A8ML82), END4_BIFLD (B3DS13), END4_BIFLO (Q8G689), END4_BIFLS (B7GRN1), END4_CAMFF (A0RRG4), END4_CARHZ (Q3ABA7), END4_CENSY (A0RYW7), END4_CLOB8 (A6LQV9), END4_CLOBA (B2V158), END4_CLOBB (B2TL64), END4_CLOD6 (Q189A4), END4_CROS8 (A7MLL2), END4_FINM2 (B0S196), END4_HALMA (Q5V0S8), END4_HALS3 (B0R2U6), END4_HALSA (Q9HSK7), END4_HALWD (Q18KA6), END4_HELMI (B0TD39), END4_LATSS (Q38XB2), END4_MESFL (Q6F1D3), END4_MESM1 (Q6KH96), END4_META1 (B3PMH1), END4_METLZ (A2SPZ6), END4_METMJ (A3CT71), END4_METPE (B8GKX5), END4_MIMIV (Q5UPY4), END4_MOOTA (Q2RJF1), END4_MYCAP (A5IYT8), END4_NATPD (Q3IMK8), END4_NATTJ (B2A499), END4_NITMS (A9A555), END4_PEDPA (Q03F56), END4_PERMH (C0QRI1), END4_SOLUE (Q01TU5), END4_SULSY (B2V7A4), END4_SYMTH (Q67S99), END4_THENN (B9KBS2), END4_THET2 (Q72KH8)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
END4_THENE (O86954), END4_YEREN (P42691) |
UniProtKB/Swiss-Prot False positive sequences |
5 sequences
EZH1_BOVIN (A7E2Z2), EZH1_HUMAN (Q92800), EZH1_MOUSE (P70351), EZH1_PONAB (Q5RDS6), GCP4_DROME (Q9VKU7)» more |
PDB [Detailed view] |
10 PDB
1QTW; 1QUM; 1XP3; 2NQH; 2NQJ; 2X7V; 2X7W; 3AAL; 4HNO; 5ZHZ |