PROSITE logo

PROSITE entry PS00730


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] AP_NUCLEASE_F2_2
Accession [info] PS00730
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00599

Name and characterization of the entry

Description [info] AP endonucleases family 2 signature 2.
Pattern [info]
[GSARY]-[LIVMF]-[CT]-[LIVMFY]-D-T-C-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 254 in 254 different sequences
Number of true positive hits 254 in 254 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 23
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.70 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 5
Site [info] zinc at position 8
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
254 sequences

APN1_CAEEL  (Q10002), APN1_PLABA  (A0A509ASK2), APN1_PLAF7  (Q8IE02), 
APN1_SCHPO  (P50525), APN1_YEAST  (P22936), END4_ACHLI  (A9NFH1), 
END4_ACTP2  (A3MZ76), END4_ACTP7  (B3H0M0), END4_ACTPJ  (B0BTA9), 
END4_AERHH  (A0KK26), END4_AERS4  (A4SMZ0), END4_AKKM8  (B2UQE3), 
END4_ALIB4  (A8EWW1), END4_ALKOO  (A8ML82), END4_ANOFW  (B7GH81), 
END4_AQUAE  (O67551), END4_AYWBP  (Q2NJF9), END4_BACAA  (C3P8J1), 
END4_BACAC  (C3LKW3), END4_BACAH  (A0RIQ8), END4_BACAN  (Q81LV1), 
END4_BACC0  (B7JN09), END4_BACC2  (B7IYD6), END4_BACC3  (C1ES07), 
END4_BACC4  (B7HCQ9), END4_BACC7  (B7HPI4), END4_BACCN  (A7GSY1), 
END4_BACCQ  (B9IY53), END4_BACCR  (Q818H3), END4_BACCZ  (Q634Q3), 
END4_BACFN  (Q5LG28), END4_BACFR  (Q64WY5), END4_BACHK  (Q6HDN3), 
END4_BACLD  (Q65HA0), END4_BACMK  (A9VHR4), END4_BACSU  (P54476), 
END4_BACTN  (Q89YT0), END4_BACVZ  (A7Z6S8), END4_BIFLD  (B3DS13), 
END4_BIFLO  (Q8G689), END4_BIFLS  (B7GRN1), END4_BUCA5  (B8D8T8), 
END4_BUCAI  (P57237), END4_BUCAP  (P59058), END4_BUCAT  (B8D742), 
END4_BUCBP  (P59496), END4_CAMC1  (A8Z6D9), END4_CAMC5  (A7GW36), 
END4_CAMFF  (A0RRG4), END4_CAMHC  (A7I010), END4_CARHZ  (Q3ABA7), 
END4_CENSY  (A0RYW7), END4_CHLAA  (A9WII8), END4_CHLAB  (Q5L798), 
END4_CHLAD  (B8G418), END4_CHLCH  (Q3AT74), END4_CHLCV  (Q824X6), 
END4_CHLL2  (B3EEJ7), END4_CHLL3  (Q3B5R5), END4_CHLMU  (Q9PJB8), 
END4_CHLP8  (B3QQA9), END4_CHLPB  (B3ELV8), END4_CHLPM  (A4SDE2), 
END4_CHLPN  (Q9Z7H3), END4_CHLSY  (B9LAM9), END4_CHLT2  (B0B8K0), 
END4_CHLTA  (Q3KL70), END4_CHLTB  (B0BA79), END4_CHLTE  (Q8KFL0), 
END4_CHLTR  (O84630), END4_CITBB  (B5EAS8), END4_CITK8  (A8AE66), 
END4_CLOB8  (A6LQV9), END4_CLOBA  (B2V158), END4_CLOBB  (B2TL64), 
END4_CLOD6  (Q189A4), END4_CROS8  (A7MLL2), END4_DESAH  (C0QMG1), 
END4_DESOH  (A8ZSE7), END4_DESPS  (Q6ASE4), END4_DICDI  (Q966U0), 
END4_ECO24  (A7ZNY3), END4_ECO27  (B7UFH5), END4_ECO45  (B7MF74), 
END4_ECO55  (B7LAI2), END4_ECO57  (P0A6C2), END4_ECO5E  (B5YWV0), 
END4_ECO7I  (B7NMX3), END4_ECO81  (B7MX24), END4_ECO8A  (B7M507), 
END4_ECOBW  (C4ZU09), END4_ECODH  (B1X857), END4_ECOHS  (A8A222), 
END4_ECOK1  (A1AD18), END4_ECOL5  (Q0TFT1), END4_ECOL6  (Q8FFU0), 
END4_ECOLC  (B1IYB0), END4_ECOLI  (P0A6C1), END4_ECOLU  (B7N5C2), 
END4_ECOSE  (B6I8L0), END4_ECOSM  (B1LKQ6), END4_ECOUT  (Q1R9R2), 
END4_EDWI9  (C5BCN2), END4_ENT38  (A4WCJ5), END4_ENTFA  (Q834D0), 
END4_ERWT9  (B2VIH1), END4_ESCF3  (B7LVB9), END4_EXIS2  (B1YL88), 
END4_FINM2  (B0S196), END4_GEODF  (B9M4N1), END4_GEOKA  (Q5KX27), 
END4_GEOSL  (Q74FS7), END4_GEOSM  (C6DYE3), END4_GEOSW  (C5D4R0), 
END4_GEOTN  (A4IR02), END4_GLAP5  (B8F7D1), END4_HAEDU  (Q7VMC4), 
END4_HALH5  (Q9KD33), END4_HALOH  (B8CW79), END4_HERA2  (A9B5N7), 
END4_KLEP3  (B5XP51), END4_KLEP7  (A6TBP4), END4_LACP7  (A9KNS9), 
END4_LACPL  (Q88VR2), END4_LATSS  (Q38XB2), END4_LISIN  (Q92BR0), 
END4_LISMC  (C1KV96), END4_LISMF  (Q71ZM1), END4_LISMO  (Q8Y756), 
END4_LISW6  (A0AIQ1), END4_LYSSC  (B1HTF6), END4_MAGMM  (A0L901), 
END4_MALP2  (Q8EWT2), END4_MESFL  (Q6F1D3), END4_MESH2  (Q601Y6), 
END4_MESH7  (Q4A8V0), END4_MESHJ  (Q4AAX4), END4_META1  (B3PMH1), 
END4_METLZ  (A2SPZ6), END4_METMJ  (A3CT71), END4_METPE  (B8GKX5), 
END4_METST  (Q2NFM3), END4_MIMIV  (Q5UPY4), END4_MYCAP  (A5IYT8), 
END4_MYCBO  (P63536), END4_MYCBP  (A1KGF0), END4_MYCBT  (C1AL03), 
END4_MYCCT  (Q2ST57), END4_MYCGA  (Q7NBA9), END4_MYCGE  (P47477), 
END4_MYCLB  (B8ZSC5), END4_MYCLE  (P30770), END4_MYCM1  (Q6KH96), 
END4_MYCMM  (B2HSJ8), END4_MYCMS  (Q6MUC7), END4_MYCPN  (P75457), 
END4_MYCS5  (Q4A6S5), END4_MYCTA  (A5U056), END4_MYCTO  (P9WQ12), 
END4_MYCTU  (P9WQ13), END4_MYCUA  (A0PM27), END4_NITMS  (A9A555), 
END4_OCEIH  (Q8EPZ2), END4_ONYPE  (Q6YQC1), END4_PARUW  (Q6MED0), 
END4_PECAS  (Q6D3L8), END4_PECCP  (C6DEL1), END4_PEDPA  (Q03F56), 
END4_PELPB  (B4SE58), END4_PERMH  (C0QRI1), END4_PETMO  (A9BJ15), 
END4_PHOLL  (Q7N364), END4_PHOPR  (Q6LUP5), END4_PHOV8  (A6L330), 
END4_PROA2  (B4S3I3), END4_PROMH  (B4ETA5), END4_SALA4  (B5EYQ5), 
END4_SALAR  (A9MK49), END4_SALCH  (Q57MD6), END4_SALDC  (B5FNK8), 
END4_SALEP  (B5R173), END4_SALG2  (B5RC42), END4_SALHS  (B4TAM6), 
END4_SALNS  (B4SY37), END4_SALPA  (Q5PE50), END4_SALPB  (A9N6I5), 
END4_SALPC  (C0Q0T7), END4_SALPK  (B5BE34), END4_SALSV  (B4TNR0), 
END4_SALTI  (Q8Z593), END4_SALTY  (Q8ZNK6), END4_SERP5  (A8GGT5), 
END4_SHIB3  (B2TVT4), END4_SHIBS  (Q31YW6), END4_SHIDS  (Q32EQ7), 
END4_SHIF8  (Q0T2W5), END4_SHIFL  (Q83QW6), END4_SHISS  (Q3Z047), 
END4_SHOC1  (Q5WHC2), END4_STAA1  (A7X2V2), END4_STAA2  (A6U229), 
END4_STAA3  (Q2FGG6), END4_STAA8  (Q2FY16), END4_STAA9  (A5IT85), 
END4_STAAB  (Q2YT22), END4_STAAC  (Q5HFK3), END4_STAAE  (A6QHA0), 
END4_STAAM  (P63537), END4_STAAN  (P63538), END4_STAAR  (Q6GGE2), 
END4_STAAS  (Q6G909), END4_STAAT  (A8Z497), END4_STAAW  (P63539), 
END4_STACT  (B9DNM8), END4_STAEQ  (Q5HNZ1), END4_STAES  (Q8CP25), 
END4_STAHJ  (Q4L6Q7), END4_STAS1  (Q49Y00), END4_STRAW  (Q82AG6), 
END4_STRCO  (Q9S2N2), END4_SULDN  (Q30PH2), END4_SULNB  (A6QCI0), 
END4_SULSY  (B2V7A4), END4_SYMTH  (Q67S99), END4_THEAB  (B7IDS7), 
END4_THEAC  (Q9HJS3), END4_THEM4  (A6LMU8), END4_THEMA  (Q9WYJ7), 
END4_THENN  (B9KBS2), END4_THEP1  (A5IK54), END4_THESQ  (B1L9C6), 
END4_THEVO  (Q97A09), END4_TOLAT  (C4LD49), END4_TRIL1  (B3E325), 
END4_UREPA  (Q9PQI5), END4_UREU1  (B5ZBB4), END4_VIBC1  (A7MS84), 
END4_VIBC3  (A5F5R6), END4_VIBCH  (Q9KPK7), END4_VIBCM  (C3LQD2), 
END4_VIBPA  (Q87SC6), END4_VIBVU  (Q8DEP6), END4_VIBVY  (Q7MNR1), 
END4_WOLSU  (Q7M8B4), END4_YERE8  (A1JLX8), END4_YERP3  (A7FK62), 
END4_YERPA  (Q1C982), END4_YERPB  (B2K9J1), END4_YERPE  (Q8ZGJ1), 
END4_YERPG  (A9R4S1), END4_YERPN  (Q1CG79), END4_YERPP  (A4TNA4), 
END4_YERPS  (Q66CR5), END4_YERPY  (B1JRM5)
» more

UniProtKB/Swiss-Prot
False negative sequences
23 sequences

APE_ASFB7   (Q65202), APE_ASFK5   (P0C9C8), APE_ASFM2   (Q65246), 
APE_ASFP4   (P0C9C6), APE_ASFWA   (P0C9C7), END4_HALHL  (A1WXM0), 
END4_HALMA  (Q5V0S8), END4_HALS3  (B0R2U6), END4_HALSA  (Q9HSK7), 
END4_HALWD  (Q18KA6), END4_HELMI  (B0TD39), END4_MOOTA  (Q2RJF1), 
END4_MYCPU  (Q98PU8), END4_NATPD  (Q3IMK8), END4_NATTJ  (B2A499), 
END4_NAUPA  (B9L9K0), END4_NITSB  (A6Q1P1), END4_NITV2  (Q72CQ9), 
END4_NITV4  (A1VEI5), END4_OLEA2  (Q30YP7), END4_PARD8  (A6LB99), 
END4_SOLUE  (Q01TU5), END4_THET2  (Q72KH8)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

END4_THENE  (O86954), END4_YEREN  (P42691)

		
PDB
[Detailed view]
15 PDB

1QTW; 1QUM; 1XP3; 2NQ9; 2NQH; 2NQJ; 2X7V; 2X7W; 3AAL; 4HNO; 4K1G; 5ZHZ; 8AXY; 8EDD; 8PKB
» more