PROSITE logo

PROSITE entry PS00731


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] AP_NUCLEASE_F2_3
Accession [info] PS00731
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00599

Name and characterization of the entry

Description [info] AP endonucleases family 2 signature 3.
Pattern [info]
[LIVMFW]-H-x-N-[DEG]-[SA]-x(4)-[GNAQ]-x(3)-D-x-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 260 in 260 different sequences
Number of true positive hits 260 in 260 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 18
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 93.53 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 2
Site [info] zinc at position 10
Site [info] zinc at position 12
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
260 sequences

APE_ASFB7   (Q65202), APE_ASFK5   (P0C9C8), APE_ASFM2   (Q65246), 
APE_ASFP4   (P0C9C6), APE_ASFWA   (P0C9C7), APN1_CAEEL  (Q10002), 
APN1_PLABA  (A0A509ASK2), APN1_PLAF7  (Q8IE02), APN1_SCHPO  (P50525), 
APN1_YEAST  (P22936), END4_ACHLI  (A9NFH1), END4_ACTP2  (A3MZ76), 
END4_ACTP7  (B3H0M0), END4_ACTPJ  (B0BTA9), END4_AERHH  (A0KK26), 
END4_AERS4  (A4SMZ0), END4_ALIB4  (A8EWW1), END4_ALKOO  (A8ML82), 
END4_ANOFW  (B7GH81), END4_AQUAE  (O67551), END4_AYWBP  (Q2NJF9), 
END4_BACAA  (C3P8J1), END4_BACAC  (C3LKW3), END4_BACAH  (A0RIQ8), 
END4_BACAN  (Q81LV1), END4_BACC0  (B7JN09), END4_BACC2  (B7IYD6), 
END4_BACC3  (C1ES07), END4_BACC4  (B7HCQ9), END4_BACC7  (B7HPI4), 
END4_BACCN  (A7GSY1), END4_BACCQ  (B9IY53), END4_BACCR  (Q818H3), 
END4_BACCZ  (Q634Q3), END4_BACFN  (Q5LG28), END4_BACFR  (Q64WY5), 
END4_BACHK  (Q6HDN3), END4_BACLD  (Q65HA0), END4_BACMK  (A9VHR4), 
END4_BACSU  (P54476), END4_BACTN  (Q89YT0), END4_BACVZ  (A7Z6S8), 
END4_BIFLD  (B3DS13), END4_BIFLO  (Q8G689), END4_BUCA5  (B8D8T8), 
END4_BUCAI  (P57237), END4_BUCAP  (P59058), END4_BUCAT  (B8D742), 
END4_BUCBP  (P59496), END4_CAMC1  (A8Z6D9), END4_CAMFF  (A0RRG4), 
END4_CARHZ  (Q3ABA7), END4_CENSY  (A0RYW7), END4_CHLAA  (A9WII8), 
END4_CHLAB  (Q5L798), END4_CHLAD  (B8G418), END4_CHLCH  (Q3AT74), 
END4_CHLCV  (Q824X6), END4_CHLL2  (B3EEJ7), END4_CHLL3  (Q3B5R5), 
END4_CHLMU  (Q9PJB8), END4_CHLP8  (B3QQA9), END4_CHLPM  (A4SDE2), 
END4_CHLPN  (Q9Z7H3), END4_CHLSY  (B9LAM9), END4_CHLT2  (B0B8K0), 
END4_CHLTA  (Q3KL70), END4_CHLTB  (B0BA79), END4_CHLTE  (Q8KFL0), 
END4_CHLTR  (O84630), END4_CITBB  (B5EAS8), END4_CITK8  (A8AE66), 
END4_CLOB8  (A6LQV9), END4_CLOD6  (Q189A4), END4_CROS8  (A7MLL2), 
END4_DESAH  (C0QMG1), END4_DESOH  (A8ZSE7), END4_DICDI  (Q966U0), 
END4_ECO24  (A7ZNY3), END4_ECO27  (B7UFH5), END4_ECO45  (B7MF74), 
END4_ECO55  (B7LAI2), END4_ECO57  (P0A6C2), END4_ECO5E  (B5YWV0), 
END4_ECO7I  (B7NMX3), END4_ECO81  (B7MX24), END4_ECO8A  (B7M507), 
END4_ECOBW  (C4ZU09), END4_ECODH  (B1X857), END4_ECOHS  (A8A222), 
END4_ECOK1  (A1AD18), END4_ECOL5  (Q0TFT1), END4_ECOL6  (Q8FFU0), 
END4_ECOLC  (B1IYB0), END4_ECOLI  (P0A6C1), END4_ECOLU  (B7N5C2), 
END4_ECOSE  (B6I8L0), END4_ECOSM  (B1LKQ6), END4_ECOUT  (Q1R9R2), 
END4_EDWI9  (C5BCN2), END4_ENT38  (A4WCJ5), END4_ENTFA  (Q834D0), 
END4_ERWT9  (B2VIH1), END4_ESCF3  (B7LVB9), END4_EXIS2  (B1YL88), 
END4_FINM2  (B0S196), END4_GEODF  (B9M4N1), END4_GEOKA  (Q5KX27), 
END4_GEOSL  (Q74FS7), END4_GEOSM  (C6DYE3), END4_GEOSW  (C5D4R0), 
END4_GEOTN  (A4IR02), END4_GLAP5  (B8F7D1), END4_HAEDU  (Q7VMC4), 
END4_HALH5  (Q9KD33), END4_HALHL  (A1WXM0), END4_HALMA  (Q5V0S8), 
END4_HALOH  (B8CW79), END4_HALS3  (B0R2U6), END4_HALSA  (Q9HSK7), 
END4_HALWD  (Q18KA6), END4_HELMI  (B0TD39), END4_HERA2  (A9B5N7), 
END4_KLEP3  (B5XP51), END4_KLEP7  (A6TBP4), END4_LACP7  (A9KNS9), 
END4_LACPL  (Q88VR2), END4_LATSS  (Q38XB2), END4_LISIN  (Q92BR0), 
END4_LISMC  (C1KV96), END4_LISMF  (Q71ZM1), END4_LISMO  (Q8Y756), 
END4_LISW6  (A0AIQ1), END4_LYSSC  (B1HTF6), END4_MAGMM  (A0L901), 
END4_MALP2  (Q8EWT2), END4_MESH2  (Q601Y6), END4_MESH7  (Q4A8V0), 
END4_MESHJ  (Q4AAX4), END4_META1  (B3PMH1), END4_METPE  (B8GKX5), 
END4_METST  (Q2NFM3), END4_MOOTA  (Q2RJF1), END4_MYCAP  (A5IYT8), 
END4_MYCBO  (P63536), END4_MYCBP  (A1KGF0), END4_MYCBT  (C1AL03), 
END4_MYCGA  (Q7NBA9), END4_MYCGE  (P47477), END4_MYCLB  (B8ZSC5), 
END4_MYCLE  (P30770), END4_MYCMM  (B2HSJ8), END4_MYCPN  (P75457), 
END4_MYCPU  (Q98PU8), END4_MYCTA  (A5U056), END4_MYCTO  (P9WQ12), 
END4_MYCTU  (P9WQ13), END4_MYCUA  (A0PM27), END4_NATPD  (Q3IMK8), 
END4_NAUPA  (B9L9K0), END4_NITMS  (A9A555), END4_NITSB  (A6Q1P1), 
END4_NITV2  (Q72CQ9), END4_NITV4  (A1VEI5), END4_OCEIH  (Q8EPZ2), 
END4_OLEA2  (Q30YP7), END4_ONYPE  (Q6YQC1), END4_PARD8  (A6LB99), 
END4_PARUW  (Q6MED0), END4_PECAS  (Q6D3L8), END4_PECCP  (C6DEL1), 
END4_PEDPA  (Q03F56), END4_PELPB  (B4SE58), END4_PERMH  (C0QRI1), 
END4_PETMO  (A9BJ15), END4_PHOLL  (Q7N364), END4_PHOPR  (Q6LUP5), 
END4_PHOV8  (A6L330), END4_PROA2  (B4S3I3), END4_PROMH  (B4ETA5), 
END4_SALA4  (B5EYQ5), END4_SALAR  (A9MK49), END4_SALCH  (Q57MD6), 
END4_SALDC  (B5FNK8), END4_SALEP  (B5R173), END4_SALG2  (B5RC42), 
END4_SALHS  (B4TAM6), END4_SALNS  (B4SY37), END4_SALPA  (Q5PE50), 
END4_SALPB  (A9N6I5), END4_SALPC  (C0Q0T7), END4_SALPK  (B5BE34), 
END4_SALSV  (B4TNR0), END4_SALTI  (Q8Z593), END4_SALTY  (Q8ZNK6), 
END4_SERP5  (A8GGT5), END4_SHIB3  (B2TVT4), END4_SHIBS  (Q31YW6), 
END4_SHIDS  (Q32EQ7), END4_SHIF8  (Q0T2W5), END4_SHIFL  (Q83QW6), 
END4_SHISS  (Q3Z047), END4_SOLUE  (Q01TU5), END4_STAA1  (A7X2V2), 
END4_STAA2  (A6U229), END4_STAA3  (Q2FGG6), END4_STAA8  (Q2FY16), 
END4_STAA9  (A5IT85), END4_STAAB  (Q2YT22), END4_STAAC  (Q5HFK3), 
END4_STAAE  (A6QHA0), END4_STAAM  (P63537), END4_STAAN  (P63538), 
END4_STAAR  (Q6GGE2), END4_STAAS  (Q6G909), END4_STAAT  (A8Z497), 
END4_STAAW  (P63539), END4_STACT  (B9DNM8), END4_STAEQ  (Q5HNZ1), 
END4_STAES  (Q8CP25), END4_STAHJ  (Q4L6Q7), END4_STAS1  (Q49Y00), 
END4_STRAW  (Q82AG6), END4_STRCO  (Q9S2N2), END4_SULDN  (Q30PH2), 
END4_SULNB  (A6QCI0), END4_SULSY  (B2V7A4), END4_SYMTH  (Q67S99), 
END4_THEAB  (B7IDS7), END4_THEAC  (Q9HJS3), END4_THEM4  (A6LMU8), 
END4_THEMA  (Q9WYJ7), END4_THENE  (O86954), END4_THENN  (B9KBS2), 
END4_THEP1  (A5IK54), END4_THESQ  (B1L9C6), END4_THET2  (Q72KH8), 
END4_THEVO  (Q97A09), END4_TOLAT  (C4LD49), END4_TRIL1  (B3E325), 
END4_UREPA  (Q9PQI5), END4_UREU1  (B5ZBB4), END4_VIBC1  (A7MS84), 
END4_VIBC3  (A5F5R6), END4_VIBCH  (Q9KPK7), END4_VIBCM  (C3LQD2), 
END4_VIBPA  (Q87SC6), END4_VIBVU  (Q8DEP6), END4_VIBVY  (Q7MNR1), 
END4_WOLSU  (Q7M8B4), END4_YERE8  (A1JLX8), END4_YERP3  (A7FK62), 
END4_YERPA  (Q1C982), END4_YERPB  (B2K9J1), END4_YERPE  (Q8ZGJ1), 
END4_YERPG  (A9R4S1), END4_YERPN  (Q1CG79), END4_YERPP  (A4TNA4), 
END4_YERPS  (Q66CR5), END4_YERPY  (B1JRM5)
» more

UniProtKB/Swiss-Prot
False negative sequences
18 sequences

END4_AKKM8  (B2UQE3), END4_BIFLS  (B7GRN1), END4_CAMC5  (A7GW36), 
END4_CAMHC  (A7I010), END4_CHLPB  (B3ELV8), END4_CLOBA  (B2V158), 
END4_CLOBB  (B2TL64), END4_DESPS  (Q6ASE4), END4_MESFL  (Q6F1D3), 
END4_METLZ  (A2SPZ6), END4_METMJ  (A3CT71), END4_MIMIV  (Q5UPY4), 
END4_MYCCT  (Q2ST57), END4_MYCM1  (Q6KH96), END4_MYCMS  (Q6MUC7), 
END4_MYCS5  (Q4A6S5), END4_NATTJ  (B2A499), END4_SHOC1  (Q5WHC2)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

END4_YEREN  (P42691)

		
PDB
[Detailed view]
16 PDB

1QTW; 1QUM; 1XP3; 2NQ9; 2NQH; 2NQJ; 2X7V; 2X7W; 3AAL; 4HNO; 4K1G; 5ZHZ; 6KHY; 6KI3; 8AXY; 8EDD
» more