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We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Amos Bairoch

PROSITE entry PS00731


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PURL: https://purl.expasy.org/prosite/signature/PS00731

Direct ScanProsite submission
General information about the entry

Entry name [info] AP_NUCLEASE_F2_3
Accession [info] PS00731
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00599

Name and characterization of the entry

Description [info] AP endonucleases family 2 signature 3.
Pattern [info] 
[LIVMFW]-H-x-N-[DEG]-[SA]-x(4)-[GNAQ]-x(3)-D-x-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_04 which contains 573'661 sequence entries.


Total number of hits 260 in 260 different sequences
Number of true positive hits 260 in 260 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 18
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 93.53 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 2
Site [info] zinc at position 10
Site [info] zinc at position 12
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 260 sequences 

APE_ASFB7   (Q65202), APE_ASFK5   (P0C9C8), APE_ASFM2   (Q65246), 

APE_ASFP4   (P0C9C6), APE_ASFWA   (P0C9C7), APN1_CAEEL  (Q10002), 
APN1_PLABA  (A0A509ASK2), APN1_PLAF7  (Q8IE02), APN1_SCHPO  (P50525), 
APN1_YEAST  (P22936), END4_ACHLI  (A9NFH1), END4_ACTP2  (A3MZ76), 
END4_ACTP7  (B3H0M0), END4_ACTPJ  (B0BTA9), END4_AERHH  (A0KK26), 
END4_AERS4  (A4SMZ0), END4_ALIB4  (A8EWW1), END4_ALKOO  (A8ML82), 
END4_ANOFW  (B7GH81), END4_AQUAE  (O67551), END4_AYWBP  (Q2NJF9), 
END4_BACAA  (C3P8J1), END4_BACAC  (C3LKW3), END4_BACAH  (A0RIQ8), 
END4_BACAN  (Q81LV1), END4_BACC0  (B7JN09), END4_BACC2  (B7IYD6), 
END4_BACC3  (C1ES07), END4_BACC4  (B7HCQ9), END4_BACC7  (B7HPI4), 
END4_BACCN  (A7GSY1), END4_BACCQ  (B9IY53), END4_BACCR  (Q818H3), 
END4_BACCZ  (Q634Q3), END4_BACFN  (Q5LG28), END4_BACFR  (Q64WY5), 
END4_BACHK  (Q6HDN3), END4_BACLD  (Q65HA0), END4_BACMK  (A9VHR4), 
END4_BACSU  (P54476), END4_BACTN  (Q89YT0), END4_BACVZ  (A7Z6S8), 
END4_BIFLD  (B3DS13), END4_BIFLO  (Q8G689), END4_BUCA5  (B8D8T8), 
END4_BUCAI  (P57237), END4_BUCAP  (P59058), END4_BUCAT  (B8D742), 
END4_BUCBP  (P59496), END4_CAMC1  (A8Z6D9), END4_CAMFF  (A0RRG4), 
END4_CARHZ  (Q3ABA7), END4_CENSY  (A0RYW7), END4_CHLAA  (A9WII8), 
END4_CHLAB  (Q5L798), END4_CHLAD  (B8G418), END4_CHLCH  (Q3AT74), 
END4_CHLCV  (Q824X6), END4_CHLL2  (B3EEJ7), END4_CHLL3  (Q3B5R5), 
END4_CHLMU  (Q9PJB8), END4_CHLP8  (B3QQA9), END4_CHLPM  (A4SDE2), 
END4_CHLPN  (Q9Z7H3), END4_CHLSY  (B9LAM9), END4_CHLT2  (B0B8K0), 
END4_CHLTA  (Q3KL70), END4_CHLTB  (B0BA79), END4_CHLTE  (Q8KFL0), 
END4_CHLTR  (O84630), END4_CITBB  (B5EAS8), END4_CITK8  (A8AE66), 
END4_CLOB8  (A6LQV9), END4_CLOD6  (Q189A4), END4_CROS8  (A7MLL2), 
END4_DESAH  (C0QMG1), END4_DESOH  (A8ZSE7), END4_DICDI  (Q966U0), 
END4_ECO24  (A7ZNY3), END4_ECO27  (B7UFH5), END4_ECO45  (B7MF74), 
END4_ECO55  (B7LAI2), END4_ECO57  (P0A6C2), END4_ECO5E  (B5YWV0), 
END4_ECO7I  (B7NMX3), END4_ECO81  (B7MX24), END4_ECO8A  (B7M507), 
END4_ECOBW  (C4ZU09), END4_ECODH  (B1X857), END4_ECOHS  (A8A222), 
END4_ECOK1  (A1AD18), END4_ECOL5  (Q0TFT1), END4_ECOL6  (Q8FFU0), 
END4_ECOLC  (B1IYB0), END4_ECOLI  (P0A6C1), END4_ECOLU  (B7N5C2), 
END4_ECOSE  (B6I8L0), END4_ECOSM  (B1LKQ6), END4_ECOUT  (Q1R9R2), 
END4_EDWI9  (C5BCN2), END4_ENT38  (A4WCJ5), END4_ENTFA  (Q834D0), 
END4_ERWT9  (B2VIH1), END4_ESCF3  (B7LVB9), END4_EXIS2  (B1YL88), 
END4_FINM2  (B0S196), END4_GEODF  (B9M4N1), END4_GEOKA  (Q5KX27), 
END4_GEOSL  (Q74FS7), END4_GEOSM  (C6DYE3), END4_GEOSW  (C5D4R0), 
END4_GEOTN  (A4IR02), END4_GLAP5  (B8F7D1), END4_HAEDU  (Q7VMC4), 
END4_HALH5  (Q9KD33), END4_HALHL  (A1WXM0), END4_HALMA  (Q5V0S8), 
END4_HALOH  (B8CW79), END4_HALS3  (B0R2U6), END4_HALSA  (Q9HSK7), 
END4_HALWD  (Q18KA6), END4_HELMI  (B0TD39), END4_HERA2  (A9B5N7), 
END4_KLEP3  (B5XP51), END4_KLEP7  (A6TBP4), END4_LACP7  (A9KNS9), 
END4_LACPL  (Q88VR2), END4_LATSS  (Q38XB2), END4_LISIN  (Q92BR0), 
END4_LISMC  (C1KV96), END4_LISMF  (Q71ZM1), END4_LISMO  (Q8Y756), 
END4_LISW6  (A0AIQ1), END4_LYSSC  (B1HTF6), END4_MAGMM  (A0L901), 
END4_MALP2  (Q8EWT2), END4_MESH2  (Q601Y6), END4_MESH7  (Q4A8V0), 
END4_MESHJ  (Q4AAX4), END4_META1  (B3PMH1), END4_METPE  (B8GKX5), 
END4_METST  (Q2NFM3), END4_MOOTA  (Q2RJF1), END4_MYCAP  (A5IYT8), 
END4_MYCBO  (P63536), END4_MYCBP  (A1KGF0), END4_MYCBT  (C1AL03), 
END4_MYCGA  (Q7NBA9), END4_MYCGE  (P47477), END4_MYCLB  (B8ZSC5), 
END4_MYCLE  (P30770), END4_MYCMM  (B2HSJ8), END4_MYCPN  (P75457), 
END4_MYCPU  (Q98PU8), END4_MYCTA  (A5U056), END4_MYCTO  (P9WQ12), 
END4_MYCTU  (P9WQ13), END4_MYCUA  (A0PM27), END4_NATPD  (Q3IMK8), 
END4_NAUPA  (B9L9K0), END4_NITMS  (A9A555), END4_NITSB  (A6Q1P1), 
END4_NITV2  (Q72CQ9), END4_NITV4  (A1VEI5), END4_OCEIH  (Q8EPZ2), 
END4_OLEA2  (Q30YP7), END4_ONYPE  (Q6YQC1), END4_PARD8  (A6LB99), 
END4_PARUW  (Q6MED0), END4_PECAS  (Q6D3L8), END4_PECCP  (C6DEL1), 
END4_PEDPA  (Q03F56), END4_PELPB  (B4SE58), END4_PERMH  (C0QRI1), 
END4_PETMO  (A9BJ15), END4_PHOLL  (Q7N364), END4_PHOPR  (Q6LUP5), 
END4_PHOV8  (A6L330), END4_PROA2  (B4S3I3), END4_PROMH  (B4ETA5), 
END4_SALA4  (B5EYQ5), END4_SALAR  (A9MK49), END4_SALCH  (Q57MD6), 
END4_SALDC  (B5FNK8), END4_SALEP  (B5R173), END4_SALG2  (B5RC42), 
END4_SALHS  (B4TAM6), END4_SALNS  (B4SY37), END4_SALPA  (Q5PE50), 
END4_SALPB  (A9N6I5), END4_SALPC  (C0Q0T7), END4_SALPK  (B5BE34), 
END4_SALSV  (B4TNR0), END4_SALTI  (Q8Z593), END4_SALTY  (Q8ZNK6), 
END4_SERP5  (A8GGT5), END4_SHIB3  (B2TVT4), END4_SHIBS  (Q31YW6), 
END4_SHIDS  (Q32EQ7), END4_SHIF8  (Q0T2W5), END4_SHIFL  (Q83QW6), 
END4_SHISS  (Q3Z047), END4_SOLUE  (Q01TU5), END4_STAA1  (A7X2V2), 
END4_STAA2  (A6U229), END4_STAA3  (Q2FGG6), END4_STAA8  (Q2FY16), 
END4_STAA9  (A5IT85), END4_STAAB  (Q2YT22), END4_STAAC  (Q5HFK3), 
END4_STAAE  (A6QHA0), END4_STAAM  (P63537), END4_STAAN  (P63538), 
END4_STAAR  (Q6GGE2), END4_STAAS  (Q6G909), END4_STAAT  (A8Z497), 
END4_STAAW  (P63539), END4_STACT  (B9DNM8), END4_STAEQ  (Q5HNZ1), 
END4_STAES  (Q8CP25), END4_STAHJ  (Q4L6Q7), END4_STAS1  (Q49Y00), 
END4_STRAW  (Q82AG6), END4_STRCO  (Q9S2N2), END4_SULDN  (Q30PH2), 
END4_SULNB  (A6QCI0), END4_SULSY  (B2V7A4), END4_SYMTH  (Q67S99), 
END4_THEAB  (B7IDS7), END4_THEAC  (Q9HJS3), END4_THEM4  (A6LMU8), 
END4_THEMA  (Q9WYJ7), END4_THENE  (O86954), END4_THENN  (B9KBS2), 
END4_THEP1  (A5IK54), END4_THESQ  (B1L9C6), END4_THET2  (Q72KH8), 
END4_THEVO  (Q97A09), END4_TOLAT  (C4LD49), END4_TRIL1  (B3E325), 
END4_UREPA  (Q9PQI5), END4_UREU1  (B5ZBB4), END4_VIBC1  (A7MS84), 
END4_VIBC3  (A5F5R6), END4_VIBCH  (Q9KPK7), END4_VIBCM  (C3LQD2), 
END4_VIBPA  (Q87SC6), END4_VIBVU  (Q8DEP6), END4_VIBVY  (Q7MNR1), 
END4_WOLSU  (Q7M8B4), END4_YERE8  (A1JLX8), END4_YERP3  (A7FK62), 
END4_YERPA  (Q1C982), END4_YERPB  (B2K9J1), END4_YERPE  (Q8ZGJ1), 
END4_YERPG  (A9R4S1), END4_YERPN  (Q1CG79), END4_YERPP  (A4TNA4), 
END4_YERPS  (Q66CR5), END4_YERPY  (B1JRM5)
» more

UniProtKB/Swiss-Prot
False negative sequences		 18 sequences 

END4_AKKM8  (B2UQE3), END4_BIFLS  (B7GRN1), END4_CAMC5  (A7GW36), 

END4_CAMHC  (A7I010), END4_CHLPB  (B3ELV8), END4_CLOBA  (B2V158), 
END4_CLOBB  (B2TL64), END4_DESPS  (Q6ASE4), END4_MESFL  (Q6F1D3), 
END4_METLZ  (A2SPZ6), END4_METMJ  (A3CT71), END4_MIMIV  (Q5UPY4), 
END4_MYCCT  (Q2ST57), END4_MYCM1  (Q6KH96), END4_MYCMS  (Q6MUC7), 
END4_MYCS5  (Q4A6S5), END4_NATTJ  (B2A499), END4_SHOC1  (Q5WHC2)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

END4_YEREN  (P42691)


				
	

	

		PDB
[Detailed view]		
		
			18 PDB
			


			pdb_00001qtw; pdb_00001qum; pdb_00001xp3; pdb_00002nq9; pdb_00002nqh; pdb_00002nqj; pdb_00002x7v; pdb_00002x7w; pdb_00003aal; pdb_00004hno; pdb_00004k1g; pdb_00005zhz; 
			
				pdb_00006khy; pdb_00006ki3; pdb_00008axy; pdb_00008edd; pdb_00008pkb; pdb_00008rly
			
			

			» more