PROSITE entry PS00774

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	CHITINASE_19_2
Accession [info]	PS00774
Entry type [info]	PATTERN
Date [info]	01-DEC-1992 CREATED; 01-JUN-1994 DATA UPDATE; 08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info]	PDOC00620

Name and characterization of the entry

Description [info]	Chitinases family 19 signature 2.
Pattern [info]	[LIVM]-[GSA]-F-x-[STAG](2)-[LIVMFY]-W-[FY]-W-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.

Total number of hits	59 in 59 different sequences
Number of true positive hits	59 in 59 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	11
Number of 'partial' sequences	21

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	84.29 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	59 sequences AGI_URTDI (P11218), CHI10_ORYSJ (Q5NB11), CHI11_ORYSJ (Q10S66), CHI12_ORYSJ (P25765), CHI1_GOSHI (Q39799), CHI1_HEVBR (Q949H3), CHI1_HORVU (P11955), CHI1_ORYSJ (Q42993), CHI1_SOLTU (P52403), CHI1_THECC (Q41596), CHI1_TOBAC (P08252), CHI2_BRANA (Q09023), CHI2_GOSHI (Q39785), CHI2_HEVBR (W0IWL0), CHI2_HORVU (P23951), CHI2_ORYSJ (Q7DNA1), CHI2_PEA(P21226), CHI2_SOLTU (P52404), CHI2_TOBAC (P24091), CHI3_ORYSJ (P24626), CHI3_SOLTU (P52405), CHI3_TOBAC (P29059), CHI4_BRANA (Q06209), CHI4_CRYJA (Q5NTA4), CHI4_ORYSJ (O04138), CHI4_PHAVU (P27054), CHI4_SOLTU (P52406), CHI58_ARATH (O24598), CHI59_ARATH (O24658), CHI5_ORYSJ (Q7Y1Z0), CHI5_PHAVU (P36361), CHI6_POPTR (P16579), CHI8_ORYSJ (Q7XCK6), CHI8_POPTR (P16061), CHI9_ORYSJ (Q688M5), CHIA_MAIZE (P29022), CHIA_SECCE (Q9FRV1), CHIA_SOLCI (Q40114), CHIA_SOLLC (Q05539), CHIB_ARATH (P19171), CHIB_MAIZE (P29023), CHIB_POPTR (P29031), CHIB_SOLLC (Q05540), CHIB_VITVI (P51613), CHIC_SECCE (Q9FRV0), CHIC_SOLLC (Q05538), CHID_SOLLC (Q05537), CHIL_HEVBR (Q8GUD7), CHIP_TOBAC (P17513), CHIQ_TOBAC (P17514), CHIT_ACTCC (P86473), CHIT_CARPA (P85084), CHIT_DIOJA (P80052), CHIT_PERAE (P93680), CHIT_PETHY (P29021), CHIT_PHAVU (P06215), CHIT_SOLTU (P05315), CHIX_PEA(P36907), MLX56_MORAL (A7XQ02) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	11 sequences AMP_LYMAR (P86521), AMP_TRIKH (P85966), CHI5_ARATH (Q9M2U5), CHI60_ARATH (O24654), CHI61_ARATH (O22842), CHI62_ARATH (O22841), CHI6_ORYSJ (Q6K8R2), CHI7_ORYSJ (Q7Y1Z1), CHI_ARATH (O24603), CTL1_ARATH (Q9MA41), CTL2_ARATH (Q9LSP9) » more
UniProtKB/Swiss-Prot 'Partial' sequences	21 sequences CHI1_CAPAA (P86078), CHI1_CAPCH (P86081), CHI1_CASSA (P29137), CHI1_GINBI (P85343), CHI1_PEA(P21225), CHI1_TAXBA (P85337), CHI2_ARAHY (Q06014), CHI2_CAPAA (P86079), CHI2_CAPCH (P86082), CHI2_TAXBA (P85338), CHI3_ARAHY (Q06015), CHI3_TAXBA (P85355), CHI4_ARAHY (Q06016), CHIA_ARAHY (Q06012), CHIB_ARAHY (Q06013), CHIB_PEA(P21227), CHIC_POPTR (P29032), CHIT_AVESA (P86181), CHIT_TRISX (C0HJM6), CHLY_CARPA (P81241), IAMY_COILA (P15326) » more
PDB [Detailed view]	11 PDB 1CNS; 2BAA; 2DKV; 3CQL; 3IWR; 4DWX; 4DYG; 4J0L; 4MCK; 4MST; 5H7T