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PROSITE entry PS00782


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PURL: https://purl.expasy.org/prosite/signature/PS00782

Direct ScanProsite submission
General information about the entry

Entry name [info] TFIIB
Accession [info] PS00782
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00624

Name and characterization of the entry

Description [info] Transcription factor TFIIB repeat signature.
Pattern [info] 
G-[KR]-x(3)-[STAGN]-{S}-[LIVMYA]-[GSTA](2)-[CSAV]-[LIVM]-[LIVMFY]-
[LIVMA]-[GSA]-[STAC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 128 in 73 different sequences
Number of true positive hits 125 in 70 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 15
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.66 %
Recall (true positives / (true positives + false negatives)) 89.29 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 2
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 70 sequences 

TF2B1_ARATH (P48512), TF2B1_SACS2 (P58111), TF2B1_THEAC (Q9HJM7), 

TF2B1_THEKO (Q5JGN1), TF2B1_THEVO (Q979Q3), TF2B2_ARATH (Q9SS44), 
TF2B2_HALSA (Q9HRE6), TF2B2_HALVD (Q9YGA5), TF2B2_THEAC (Q9HJM2), 
TF2B2_THEKO (P58109), TF2B2_THEVO (Q979P7), TF2B3_HALSA (Q9HHK5), 
TF2B4_HALSA (Q9HR45), TF2B6_HALSA (Q9HSB3), TF2B7_HALSA (Q9HSF7), 
TF2B_AERPE  (Q9Y942), TF2B_ARCFU  (O28970), TF2B_BOVIN  (Q2KIN8), 
TF2B_CAEEL  (O16991), TF2B_CALMQ  (A8MCX6), TF2B_DICDI  (Q54FD6), 
TF2B_DROME  (P29052), TF2B_DROVI  (Q9NHP7), TF2B_ENCCU  (Q8SRP3), 
TF2B_HALVA  (P42198), TF2B_HUMAN  (Q00403), TF2B_IGNH4  (A8AC96), 
TF2B_KLULA  (Q05959), TF2B_MACFA  (Q4R3J5), TF2B_META3  (A6UW60), 
TF2B_METAC  (Q8TT29), TF2B_METB6  (A7IAR4), TF2B_METJA  (Q58192), 
TF2B_METKA  (Q8TX21), TF2B_METM5  (A4G0F2), TF2B_METM6  (A9A8Q0), 
TF2B_METM7  (A6VI28), TF2B_METMA  (P0CW15), TF2B_METMJ  (A3CSQ6), 
TF2B_METMP  (Q6M176), TF2B_METMZ  (P0CW14), TF2B_METPE  (B8GJQ9), 
TF2B_METS3  (A5UKA1), TF2B_METST  (Q2NEL6), TF2B_METTH  (O26971), 
TF2B_METTL  (Q9P9I7), TF2B_METTP  (A0B5T8), TF2B_MOUSE  (P62915), 
TF2B_ORYSJ  (Q8W0W3), TF2B_PONAB  (Q5R886), TF2B_PYRAB  (Q9V0V5), 
TF2B_PYRAE  (Q8ZWS3), TF2B_PYRAR  (A4WMA6), TF2B_PYRFU  (P61998), 
TF2B_PYRHO  (O59151), TF2B_PYRIL  (A1RV37), TF2B_PYRNV  (B1YCX0), 
TF2B_PYROC  (Q977X4), TF2B_PYRWO  (P61999), TF2B_RAT(P62916), 
TF2B_SACSH  (P50387), TF2B_SCHPO  (O13749), TF2B_SOYBN  (P48513), 
TF2B_SULAC  (Q9UWN6), TF2B_SULTO  (Q975S1), TF2B_XENLA  (P29054), 
TF2B_YEAST  (P29055), TF3B_CANAL  (P43072), TF3B_KLULA  (P46070), 
TF3B_YEAST  (P29056)
» more

UniProtKB/Swiss-Prot
False negative sequences		 15 sequences 

BRF2_BOVIN  (Q29S07), BRF2_DANRE  (A8KBY2), BRF2_HUMAN  (Q9HAW0), 

BRF2_MACFA  (Q4R318), BRF2_MOUSE  (Q3UAW9), BRF2_RAT(Q4V8D6), 
BRF2_XENLA  (Q66IW8), BRF2_XENTR  (A4QNR3), TF2B1_HALSA (Q9HNA2), 
TF2B2_SACS2 (P58110), TF2B5_HALSA (Q9HHH8), TF2B_MIMIV  (Q5UPT1), 
TF3B_HUMAN  (Q92994), TF3B_MOUSE  (Q8CFK2), TF3B_SCHPO  (Q9P6R0)
» more

UniProtKB/Swiss-Prot
False positive sequences		 3 sequences 

GPI11_YARLI (Q6C741), HXK6_ORYSJ  (Q8LQ68), KCRS_CHICK  (P11009)


				
	

	

		PDB
[Detailed view]		
		
			100 PDB
			


			pdb_00001ais; pdb_00001c9b; pdb_00001d3u; pdb_00001tfb; pdb_00001vol; pdb_00002phg; pdb_00003k7a; pdb_00004bbr; pdb_00004bbs; pdb_00004v1n; pdb_00004v1o; pdb_00005fmf; 
			
				pdb_00005fyw; pdb_00005fz5; pdb_00005iy6; pdb_00005iy7; pdb_00005iy8; pdb_00005iy9; pdb_00005iya; pdb_00005iyb; pdb_00005iyc; pdb_00005iyd; pdb_00005oqj; pdb_00005oqm; 
				pdb_00005sva; pdb_00005wh1; pdb_00006cnb; pdb_00006cnc; pdb_00006cnd; pdb_00006cnf; pdb_00006eu0; pdb_00006f40; pdb_00006f41; pdb_00006f42; pdb_00006f44; pdb_00006gyk; 
				pdb_00006gyl; pdb_00006gym; pdb_00006o9l; pdb_00007edx; pdb_00007eg7; pdb_00007eg8; pdb_00007eg9; pdb_00007ega; pdb_00007egb; pdb_00007egc; pdb_00007ena; pdb_00007enc; 
				pdb_00007lbm; pdb_00007ml0; pdb_00007ml1; pdb_00007ml2; pdb_00007ml4; pdb_00007nvr; pdb_00007nvs; pdb_00007nvt; pdb_00007nvu; pdb_00007nvy; pdb_00007nvz; pdb_00007nw0; 
				pdb_00007o4i; pdb_00007o4j; pdb_00007o72; pdb_00007o73; pdb_00007o75; pdb_00007q5b; pdb_00007ui9; pdb_00007uif; pdb_00007uio; pdb_00007zs9; pdb_00007zsa; pdb_00007zsb; 
				pdb_00007zwc; pdb_00007zwd; pdb_00007zx7; pdb_00007zx8; pdb_00007zxe; pdb_00008bvw; pdb_00008byq; pdb_00008bz1; pdb_00008cen; pdb_00008ceo; pdb_00008ffz; pdb_00008gxq; 
				pdb_00008gxs; pdb_00008s51; pdb_00008s52; pdb_00008s5n; pdb_00008umh; pdb_00008umi; pdb_00008uoq; pdb_00008uot; pdb_00008wak; pdb_00008wal; pdb_00008wan; pdb_00008wao; 
				pdb_00008wap; pdb_00008waq; pdb_00008war; pdb_00008was
			
			

			» more