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Entry: PS00782 |
Entry name [info] | TFIIB |
Accession [info] | PS00782 |
Entry type [info] | PATTERN |
Date [info] |
01-DEC-1992 CREATED;
01-APR-2006 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00624 |
Description [info] | Transcription factor TFIIB repeat signature. |
Pattern [info] |
G-[KR]-x(3)-[STAGN]-{S}-[LIVMYA]-[GSTA](2)-[CSAV]-[LIVM]-[LIVMFY]- [LIVMA]-[GSA]-[STAC]. |
Total number of hits | 128 in 73 different sequences |
Number of true positive hits | 125 in 70 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 3 in 3 different sequences |
Number of false negative sequences | 15 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 97.66 % |
Recall (true positives / (true positives + false negatives)) | 89.29 % |
Taxonomic range [info] | Archaea, Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 2 |
Version [info] | 2 |
UniProtKB/Swiss-Prot True positive sequences |
70 sequences
TF2B1_ARATH (P48512 ), TF2B1_SACS2 (P58111 ), TF2B1_THEAC (Q9HJM7 ), TF2B1_THEKO (Q5JGN1 ), TF2B1_THEVO (Q979Q3 ), TF2B2_ARATH (Q9SS44 ), TF2B2_HALSA (Q9HRE6 ), TF2B2_HALVD (Q9YGA5 ), TF2B2_THEAC (Q9HJM2 ), TF2B2_THEKO (P58109 ), TF2B2_THEVO (Q979P7 ), TF2B3_HALSA (Q9HHK5 ), TF2B4_HALSA (Q9HR45 ), TF2B6_HALSA (Q9HSB3 ), TF2B7_HALSA (Q9HSF7 ), TF2B_AERPE (Q9Y942 ), TF2B_ARCFU (O28970 ), TF2B_BOVIN (Q2KIN8 ), TF2B_CAEEL (O16991 ), TF2B_CALMQ (A8MCX6 ), TF2B_DICDI (Q54FD6 ), TF2B_DROME (P29052 ), TF2B_DROVI (Q9NHP7 ), TF2B_ENCCU (Q8SRP3 ), TF2B_HALVA (P42198 ), TF2B_HUMAN (Q00403 ), TF2B_IGNH4 (A8AC96 ), TF2B_KLULA (Q05959 ), TF2B_MACFA (Q4R3J5 ), TF2B_META3 (A6UW60 ), TF2B_METAC (Q8TT29 ), TF2B_METB6 (A7IAR4 ), TF2B_METJA (Q58192 ), TF2B_METKA (Q8TX21 ), TF2B_METM5 (A4G0F2 ), TF2B_METM6 (A9A8Q0 ), TF2B_METM7 (A6VI28 ), TF2B_METMA (P0CW15 ), TF2B_METMJ (A3CSQ6 ), TF2B_METMP (Q6M176 ), TF2B_METMZ (P0CW14 ), TF2B_METPE (B8GJQ9 ), TF2B_METS3 (A5UKA1 ), TF2B_METST (Q2NEL6 ), TF2B_METTH (O26971 ), TF2B_METTL (Q9P9I7 ), TF2B_METTP (A0B5T8 ), TF2B_MOUSE (P62915 ), TF2B_ORYSJ (Q8W0W3 ), TF2B_PONAB (Q5R886 ), TF2B_PYRAB (Q9V0V5 ), TF2B_PYRAE (Q8ZWS3 ), TF2B_PYRAR (A4WMA6 ), TF2B_PYRFU (P61998 ), TF2B_PYRHO (O59151 ), TF2B_PYRIL (A1RV37 ), TF2B_PYRNV (B1YCX0 ), TF2B_PYROC (Q977X4 ), TF2B_PYRWO (P61999 ), TF2B_RAT (P62916 ), TF2B_SACSH (P50387 ), TF2B_SCHPO (O13749 ), TF2B_SOYBN (P48513 ), TF2B_SULAC (Q9UWN6 ), TF2B_SULTO (Q975S1 ), TF2B_XENLA (P29054 ), TF2B_YEAST (P29055 ), TF3B_CANAL (P43072 ), TF3B_KLULA (P46070 ), TF3B_YEAST (P29056 )» more
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UniProtKB/Swiss-Prot False negative sequences |
15 sequences
BRF2_BOVIN (Q29S07 ), BRF2_DANRE (A8KBY2 ), BRF2_HUMAN (Q9HAW0 ), BRF2_MACFA (Q4R318 ), BRF2_MOUSE (Q3UAW9 ), BRF2_RAT (Q4V8D6 ), BRF2_XENLA (Q66IW8 ), BRF2_XENTR (A4QNR3 ), TF2B1_HALSA (Q9HNA2 ), TF2B2_SACS2 (P58110 ), TF2B5_HALSA (Q9HHH8 ), TF2B_MIMIV (Q5UPT1 ), TF3B_HUMAN (Q92994 ), TF3B_MOUSE (Q8CFK2 ), TF3B_SCHPO (Q9P6R0 )» more |
UniProtKB/Swiss-Prot False positive sequences |
3 sequences
GPI11_YARLI (Q6C741 ), HXK6_ORYSJ (Q8LQ68 ), KCRS_CHICK (P11009 ) |
PDB [Detailed view] |
39 PDB
1AIS; 1C9B; 1D3U; 1TFB; 1VOL; 2PHG; 3K7A; 4BBR; 4BBS; 4V1N; 4V1O; 5FMF; 5FYW; 5FZ5; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5OQJ; 5OQM; 5SVA; 5WH1; 6CNB; 6CNC; 6CND; 6CNF; 6EU0; 6F40; 6F41; 6F42; 6F44; 6GYK; 6GYL; 6GYM; 6O9L » more |