PROSITE entry PS00800
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General information about the entry
| Entry name [info] | PECTINESTERASE_1 |
| Accession [info] | PS00800 |
| Entry type [info] | PATTERN |
| Date [info] |
01-DEC-1992 CREATED;
01-JUL-1999 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00413 |
Name and characterization of the entry
| Description [info] | Pectinesterase signature 1. |
| Pattern [info] |
[GSTNP]-x(6)-[FYVHR]-[IVN]-[KEP]-x-G-[STIVKRQ]-Y-[DNQKRMV]-[EP]-x(3)- [LIMVA]. |
Numerical results [info]
| Total number of hits | 39 in 39 different sequences |
| Number of true positive hits | 37 in 37 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 2 in 2 different sequences |
| Number of false negative sequences | 61 |
| Number of 'partial' sequences | 2 |
| Precision (true positives / (true positives + false positives)) | 94.87 % |
| Recall (true positives / (true positives + false negatives)) | 37.76 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
37 sequences
PME12_ARATH (O48711), PME18_ARATH (Q1JPL7), PME19_ARATH (Q84JX1), PME1_ARATH (Q43867), PME1_CITSI (O04886), PME1_SOLLC (P14280), PME21_SOLLC (P09607), PME22_ARATH (Q9M9W7), PME22_SOLLC (Q96575), PME23_ARATH (Q8GXA1), PME26_ARATH (Q9LUL8), PME2_ARATH (Q42534), PME2_CITSI (O04887), PME30_ARATH (Q3EAY9), PME32_ARATH (Q9LXK7), PME37_ARATH (Q5MFV6), PME3_ARATH (O49006), PME3_CITSI (P83948), PME3_PHAVU (Q43111), PME3_SOLLC (Q96576), PME42_ARATH (Q1PEC0), PME43_ARATH (O23447), PME58_ARATH (Q9FJ21), PME59_ARATH (Q9FHN5), PME5_ARATH (Q5MFV8), PME60_ARATH (Q9FHN4), PMEB_DICD3 (Q47474), PMEU1_SOLLC (Q43143), PME_ASPAC (Q12535), PME_ASPNG (P17872), PME_BRACM (Q42608), PME_BRANA (P41510), PME_DAUCA (P83218), PME_MEDSA (Q42920), PME_PETIN (Q43043), PME_PRUPE (Q43062), YBHC_ECOLI (P46130)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
61 sequences
AL11A_OLEEU (D8VPP5), AL11B_OLEEU (B2VPR8), PME10_ARATH (O64479), PME11_ARATH (Q9SIJ9), PME13_ARATH (Q7Y201), PME14_ARATH (Q9ZQA4), PME15_ARATH (Q9ZQA3), PME16_ARATH (Q9SKX2), PME17_ARATH (O22149), PME1_FICPW (P83947), PME20_ARATH (O22256), PME21_ARATH (Q8GX86), PME24_ARATH (Q9SG77), PME25_ARATH (Q94CB1), PME28_ARATH (Q3E8Z8), PME29_ARATH (Q4PSN0), PME31_ARATH (Q9LVQ0), PME33_ARATH (Q9STY3), PME34_ARATH (Q9M3B0), PME35_ARATH (Q9LYT5), PME36_ARATH (Q84R10), PME38_ARATH (O81320), PME39_ARATH (O81415), PME40_ARATH (O81301), PME41_ARATH (Q8RXK7), PME44_ARATH (Q9SMY7), PME45_ARATH (Q9SMY6), PME46_ARATH (Q9FF78), PME48_ARATH (Q9LY19), PME49_ARATH (Q9LY18), PME50_ARATH (Q9LY17), PME51_ARATH (Q9LXD9), PME53_ARATH (Q8VYZ3), PME55_ARATH (Q3E9D3), PME56_ARATH (Q4PT34), PME57_ARATH (Q9MAL0), PME61_ARATH (Q9FK05), PME62_ARATH (Q9FM79), PME63_ARATH (Q9FKF3), PME64_ARATH (Q8L7Q7), PME66_ARATH (Q4PSQ5), PME67_ARATH (Q9LSP1), PME68_ARATH (Q8LPF3), PME6_ARATH (O49298), PME7_ARATH (Q9SRX4), PME8_ARATH (O23038), PMEA_ASPFC (B0Y9F9), PMEA_ASPFN (B8NPS7), PMEA_ASPFU (Q4WBT5), PMEA_ASPNC (A2QK82), PMEA_ASPOR (Q2UBD9), PMEA_DICCH (P0C1A8), PMEA_DICD3 (P0C1A9), PMEA_EMENI (Q5B7U0), PMEA_NEOFI (A1DBT4), PMEB_PECPM (P55743), PME_ACTDE (P85076), PME_PARHY (C0HMB4), PME_RALN1 (P58601), PME_RALSL (P24791), PPME1_ARATH (Q84WM7)» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
PME_CAPAA (P86075), PME_CAPCH (P86085) |
| UniProtKB/Swiss-Prot False positive sequences |
2 sequences
DHK1_STRVN (P16542), SYE_LEUMM (Q03ZR1) |
| PDB [Detailed view] |
3 PDB
1GQ8; 1XG2; 3GRH |