PROSITE entry PS00805

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General information about the entry

Entry name [info]	CALRETICULIN_REPEAT
Accession [info]	PS00805
Entry type [info]	PATTERN
Date [info]	01-DEC-1992 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00636

Name and characterization of the entry

Description [info]	Calreticulin family repeated motif signature.
Pattern [info]	[IVM]-x-[DV]-x-[DENST]-x(2)-K-P-[DEH]-D-W-[DEN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	114 in 49 different sequences
Number of true positive hits	114 in 49 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	1
Number of 'partial' sequences	3

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	99.13 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	3
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	49 sequences CALR1_ARATH (O04151), CALR2_ARATH (Q38858), CALR3_ARATH (O04153), CALR_BERST (Q9ZPP1), CALR_BETVU (O81919), CALR_BOMMO (Q7Z1E6), CALR_BOVIN (P52193), CALR_CAEBR (Q61KR9), CALR_CAEEL (P27798), CALR_CHLAE (Q4VIT5), CALR_CHLRE (Q9STD3), CALR_CRIGR (Q8K3H7), CALR_DICDI (Q23858), CALR_DROME (P29413), CALR_EUGGR (Q9ZNY3), CALR_HUMAN (P27797), CALR_MACFA (Q4R6K8), CALR_MACFU (Q2HWU3), CALR_MAIZE (Q9SP22), CALR_MOUSE (P14211), CALR_NICPL (Q40401), CALR_ONCVO (P11012), CALR_ORYSJ (Q9SLY8), CALR_PIG(P28491), CALR_PRUAR (Q9XF98), CALR_RABIT (P15253), CALR_RAT(P18418), CALR_RICCO (P93508), CALR_SCHMA (Q06814), CALX1_ARATH (P29402), CALX2_ARATH (Q38798), CALX_ARTBC (D4AVD4), CALX_ASPFU (Q6Q487), CALX_CAEBR (A8XA40), CALX_CAEEL (P34652), CALX_CANLF (P24643), CALX_HELTU (Q39994), CALX_HUMAN (P27824), CALX_MOUSE (P35564), CALX_PEA(O82709), CALX_PONAB (Q5R440), CALX_RAT(P35565), CALX_SCHPO (P36581), CALX_SOYBN (Q39817), CALX_YEAST (P27825), CLGN_BOVIN (Q3SYT6), CLGN_CANLF (E2RA18), CLGN_HUMAN (O14967), CNE1_CRYNH (J9VLH0) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	1 sequence CLGN_MOUSE (P52194)
UniProtKB/Swiss-Prot 'Partial' sequences	3 sequences CALR_CANLF (P28490), CALR_PELLE (P31832), CALR_SPIOL (P30806)
PDB [Detailed view]	14 PDB 1HHN; 1JHN; 1K91; 1K9C; 3ICI; 3RG0; 5V8Z; 5V90; 6ENY; 7QPD; 8RJC; 8RJD; 8TZO; 8TZR » more