PROSITE entry PS00824

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

PURL [info]	https://purl.expasy.org/prosite/signature/PS00824
Entry name [info]	EF1BD_1
Accession [info]	PS00824
Entry type [info]	PATTERN
Date [info]	01-OCT-1993 CREATED; 01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00648

Name and characterization of the entry

Description [info]	Elongation factor 1 beta/beta'/delta chain signature 1.
Pattern [info]	[DEG](2)-[DEK]-[DE]-[LIVMF]-D-L-F-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.

Total number of hits	36 in 36 different sequences
Number of true positive hits	35 in 35 different sequences
Number of 'unknown' hits	0
Number of false positive hits	1
Number of false negative sequences	3
Number of 'partial' sequences	2

Precision (true positives / (true positives + false positives))	97.22 %
Recall (true positives / (true positives + false negatives))	92.11 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	35 sequences EF1B1_CAEEL (P34460), EF1B2_ARATH (Q9SCX3), EF1B2_BOMMO (P29522), EF1B2_CAEEL (Q9U2H9), EF1B_ARTSA (P12262), EF1B_BOVIN (Q5E983), EF1B_CANAW (P78590), EF1B_CHICK (Q9YGQ1), EF1B_DROME (O96827), EF1B_HUMAN (P24534), EF1B_MOUSE (O70251), EF1B_ORYSJ (P29545), EF1B_PIG(P29412), EF1B_RABIT (P34826), EF1B_SCHPO (O74173), EF1B_TRYCR (P34827), EF1B_WHEAT (P29546), EF1B_XENLA (P30151), EF1B_XENTR (Q6DET9), EF1B_YEAST (P32471), EF1D1_ARATH (P48006), EF1D1_ORYSJ (Q40680), EF1D2_ARATH (Q9SI20), EF1D2_ORYSJ (Q40682), EF1D_ARTSA (P32192), EF1D_BETVU (O81918), EF1D_BOVIN (A5D989), EF1D_DROME (Q9VL18), EF1D_HUMAN (P29692), EF1D_MACFA (Q4R3D4), EF1D_MOUSE (P57776), EF1D_RABIT (P53787), EF1D_SHEEP (Q717R8), EF1D_SPUBR (P93447), EF1D_XENLA (P29693) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	3 sequences EF1B1_ARATH (Q84WM9), EF1B_DICDI (Q9GRF8), EF1B_PENCI (Q69BZ7)
UniProtKB/Swiss-Prot 'Partial' sequences	2 sequences EF1D_POPEU (P84973), IMPL_MOUSE (P83891)
UniProtKB/Swiss-Prot False positive sequences	1 sequence LMBL2_MOUSE (P59178)
PDB [Detailed view]	3 PDB 2MVM; 2MVN; 2N51