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Entry: PS00841

General information about the entry

Entry name [info] XPG_1
Accession [info] PS00841
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE;
02-JUN-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00658

Name and characterization of the entry

Description [info] XPG protein signature 1.
Pattern [info] 
[VILT]-[KREIT]-[PV]-x-[FYIL]-[VI]-[FW]-D-G-x(2)-[PILHSTF]-x-[LVCQMFAKS]-
K.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_03 which contains 565'254 sequence entries.


Total number of hits 189 in 189 different sequences
Number of true positive hits 189 in 189 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 26
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.91 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 189 sequences 

DIN7_YEAST  (Q12086    ), ERCC5_HUMAN (P28715    ), ERCC5_MOUSE (P35689    ), 

ERCC5_XENLA (P14629    ), EXO1_DANRE  (Q803U7    ), EXO1_DROME  (Q24558    ), 
EXO1_HUMAN  (Q9UQ84    ), EXO1_MOUSE  (Q9QZ11    ), EXO1_ORYSJ  (Q60GC1    ), 
EXO1_SCHPO  (P53695    ), EXO1_XENLA  (Q9W6K2    ), EXO1_YEAST  (P39875    ), 
FEN11_LACBS (B0DSN9    ), FEN11_ORYSI (B8AW67    ), FEN11_ORYSJ (Q9SXQ6    ), 
FEN11_PHYPA (A9S0B8    ), FEN11_SORBI (C5YUK3    ), FEN12_LACBS (B0E412    ), 
FEN12_ORYSI (B8AMS4    ), FEN12_ORYSJ (Q75LI2    ), FEN12_PHYPA (A9U328    ), 
FEN12_SORBI (C5WU23    ), FEN1A_DANRE (Q6TNU4    ), FEN1A_XENLA (P70040    ), 
FEN1B_XENLA (P70054    ), FEN1_AEDAE  (Q178M1    ), FEN1_AJECH  (C6HQJ2    ), 
FEN1_AJECN  (A6QV55    ), FEN1_AJEDR  (C5GPA7    ), FEN1_ANOFI  (C3KJE6    ), 
FEN1_ANOGA  (Q7Q323    ), FEN1_ARATH  (O65251    ), FEN1_ARTOC  (C5FZT5    ), 
FEN1_ASHGO  (Q75DS8    ), FEN1_ASPCL  (A1CJ75    ), FEN1_ASPFC  (B0XZ33    ), 
FEN1_ASPFN  (B8NV37    ), FEN1_ASPFU  (Q4WWJ1    ), FEN1_ASPNC  (A5ABU3    ), 
FEN1_ASPTN  (Q0CBS0    ), FEN1_BLAGS  (C5JVG7    ), FEN1_BOVIN  (Q58DH8    ), 
FEN1_BRAFL  (C3ZBT0    ), FEN1_BRUMA  (A8QCH0    ), FEN1_CAEBR  (A8XL25    ), 
FEN1_CAEEL  (Q9N3T2    ), FEN1_CANAL  (Q5A6K8    ), FEN1_CANAW  (C4YLS2    ), 
FEN1_CANDC  (B9WLQ5    ), FEN1_CANGA  (Q6FM28    ), FEN1_CANTT  (C5M2X8    ), 
FEN1_CHICK  (Q5ZLN4    ), FEN1_CHLRE  (A8J2Z9    ), FEN1_CLAL4  (C4YBJ8    ), 
FEN1_COPC7  (A8NQC2    ), FEN1_COPCI  (Q76F73    ), FEN1_CRYMR  (B6AFP1    ), 
FEN1_CRYNB  (P0CS61    ), FEN1_CRYNJ  (P0CS60    ), FEN1_CRYPI  (A3FPN7    ), 
FEN1_DEBHA  (Q6BLF4    ), FEN1_DICDI  (Q54NU0    ), FEN1_DROAN  (B3MDA3    ), 
FEN1_DROER  (B3NP61    ), FEN1_DROGR  (B4J6M4    ), FEN1_DROME  (Q7K7A9    ), 
FEN1_DROMO  (B4KNM1    ), FEN1_DROPE  (B4GIM3    ), FEN1_DROPS  (B5DUR8    ), 
FEN1_DROSE  (B4HTA1    ), FEN1_DROSI  (B4QIG6    ), FEN1_DROVI  (B4LM90    ), 
FEN1_DROWI  (B4MR84    ), FEN1_DROYA  (B4P5U9    ), FEN1_EMENI  (Q5B9L6    ), 
FEN1_ENTDS  (B0EN90    ), FEN1_ENTHI  (C4M6G8    ), FEN1_FUSV7  (C7Z125    ), 
FEN1_GLOMM  (D3TQJ5    ), FEN1_HUMAN  (P39748    ), FEN1_KLULA  (Q6CLH4    ), 
FEN1_KOMPG  (C4QZ20    ), FEN1_LACTC  (C5DGG4    ), FEN1_LEIBR  (A4HFE4    ), 
FEN1_LEIIN  (A4I2L4    ), FEN1_LEIMA  (Q4FYU7    ), FEN1_LODEL  (A5E121    ), 
FEN1_MACFA  (Q4R5U5    ), FEN1_MAGO7  (A4QS18    ), FEN1_MAIZE  (B4FHY0    ), 
FEN1_MICCC  (C1E3X9    ), FEN1_MONBE  (A9VB27    ), FEN1_MOUSE  (P39749    ), 
FEN1_NAEGR  (D2V434    ), FEN1_NEMVE  (A7RRJ0    ), FEN1_NEOFI  (A1D8A4    ), 
FEN1_NEUCR  (A7UW97    ), FEN1_OSMMO  (C1BM18    ), FEN1_OSTLU  (A4S1G4    ), 
FEN1_OSTTA  (Q013G9    ), FEN1_PENRW  (B6HEM2    ), FEN1_PHANO  (Q0UZR3    ), 
FEN1_PHATC  (B7G7Y7    ), FEN1_PHYIT  (D0MY34    ), FEN1_PICGU  (A5DCF5    ), 
FEN1_PICST  (A3M056    ), FEN1_PLABA  (Q4Z015    ), FEN1_PLACH  (Q4XXP8    ), 
FEN1_PLAF7  (Q7K734    ), FEN1_PLAFA  (Q9GZ01    ), FEN1_PLAKH  (B3L014    ), 
FEN1_PLAVS  (A5KAL1    ), FEN1_PLAYO  (Q7RME3    ), FEN1_POLPP  (D3BN56    ), 
FEN1_PYRTR  (B2VTT3    ), FEN1_RAT    (Q5XIP6    ), FEN1_SALSA  (B9EMY6    ), 
FEN1_SCHJY  (B6JYI7    ), FEN1_SCHPO  (P39750    ), FEN1_SHEEP  (C8BKD0    ), 
FEN1_SORMK  (D1ZT73    ), FEN1_SOYBN  (C6TEX6    ), FEN1_TALMQ  (B6QT52    ), 
FEN1_TALSN  (B8MNF2    ), FEN1_THAPS  (B8C6S5    ), FEN1_TRIAD  (B3RVF0    ), 
FEN1_TRYB2  (Q57WW6    ), FEN1_TRYB9  (C9ZKW4    ), FEN1_TRYCC  (Q4DKQ5    ), 
FEN1_UNCRE  (C4JDR3    ), FEN1_USTMA  (Q4P1V1    ), FEN1_VANPO  (A7TJ59    ), 
FEN1_XENTR  (B1H158    ), FEN1_XIPMA  (Q5I4H3    ), FEN1_YARLI  (Q6C116    ), 
FEN1_YEAS1  (B3LQY3    ), FEN1_YEAS2  (C7GVJ8    ), FEN1_YEAS7  (A6ZZK4    ), 
FEN1_YEAS8  (C8ZC62    ), FEN1_YEAST  (P26793    ), FEN1_ZYGRC  (C5DZA9    ), 
FEN_AERPE   (Q9YFY5    ), FEN_ARCFU   (O29975    ), FEN_CALMQ   (A8M9L3    ), 
FEN_CENSY   (A0RU95    ), FEN_HALS3   (B0R5F5    ), FEN_HALSA   (Q9HQ27    ), 
FEN_HALWD   (Q18HK0    ), FEN_IGNH4   (A8AAC1    ), FEN_KORCO   (B1L6R9    ), 
FEN_METAC   (Q8TIY5    ), FEN_METB6   (A7IA59    ), FEN_METBF   (Q46D63    ), 
FEN_METBU   (Q12UT1    ), FEN_METHJ   (Q2FNC9    ), FEN_METKA   (Q8TXU4    ), 
FEN_METLZ   (A2SQC6    ), FEN_METMA   (Q8PYF6    ), FEN_METMJ   (A3CWV2    ), 
FEN_METPE   (B8GIA0    ), FEN_METS3   (A5UL52    ), FEN_METST   (Q2NFD4    ), 
FEN_METTH   (O27670    ), FEN_METTP   (A0B9M7    ), FEN_NANEQ   (P61942    ), 
FEN_NATPD   (Q3IPG8    ), FEN_NITMS   (A9A4B0    ), FEN_PICTO   (Q6L2I9    ), 
FEN_PYRAB   (Q9V0P9    ), FEN_PYRAE   (Q8ZYN2    ), FEN_PYRAR   (A4WNC4    ), 
FEN_PYRCJ   (A3MY15    ), FEN_PYRFU   (O93634    ), FEN_PYRHO   (O50123    ), 
FEN_PYRIL   (A1RSC7    ), FEN_PYRNV   (B1YC46    ), FEN_SACS2   (Q980U8    ), 
FEN_SULAC   (Q4JAN1    ), FEN_SULTO   (Q976H6    ), FEN_THEAC   (Q9HJD4    ), 
FEN_THEGJ   (C5A639    ), FEN_THEKO   (Q5JGN0    ), FEN_THEON   (B6YWX4    ), 
FEN_THEPD   (A1RWY2    ), FEN_THESM   (C6A1U9    ), FEN_THEVO   (Q97B98    ), 
RAD13_SCHPO (P28706    ), RAD2_YEAST  (P07276    ), UVH3_ARATH  (Q9ATY5    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 26 sequences 

EXO1_ARATH  (Q8L6Z7    ), FEN11_PARTE (A0CXT3    ), FEN12_PARTE (A0CYG2    ), 

FEN1B_DANRE (B0UXL7    ), FEN1_BABBO  (A7AX58    ), FEN1_ENCCU  (Q8SS91    ), 
FEN1_ENTBH  (B7XHS8    ), FEN1_GIAIC  (A8B672    ), FEN1_TETTS  (A4VDN2    ), 
FEN1_THEAN  (Q4UFP0    ), FEN1_THEPA  (Q4N3S6    ), FEN_HALMA   (Q5V5T7    ), 
FEN_HYPBU   (A2BMI0    ), FEN_META3   (A6UX46    ), FEN_METAR   (Q0W6I0    ), 
FEN_METJA   (Q58839    ), FEN_STAMF   (A3DMG2    ), GENL1_ARATH (Q9LPD2    ), 
GENL1_ORYSJ (Q64MA3    ), GENL2_ARATH (Q9M2Z3    ), GENL2_ORYSJ (Q8W5R1    ), 
GEN_DROME   (Q9VRJ0    ), GEN_DROPS   (Q29FC1    ), GEN_HUMAN   (Q17RS7    ), 
GEN_MOUSE   (Q8BMI4    ), VF369_IIV6  (Q91FF5    )
» more

PDB
[Detailed view]		 42 PDB

1B43; 1MC8; 1RXV; 1RXW; 1UL1; 2IZO; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB; 4Q0R; 4Q0W; 4Q0Z; 4Q10; 4WA8; 5FV7; 5K97; 5KSE; 5UZV; 5V04; 5V05; 5V06; 5V07; 5V08; 5V09; 5V0A; 5V0B; 5V0C; 5V0D; 5V0E; 5ZOD; 5ZOE; 5ZOF; 5ZOG; 6TNZ; 6TUR; 6TUS; 6TUW; 6TUX; 6VBH
» more

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