PROSITE entry PS00841
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General information about the entry
| Entry name [info] | XPG_1 |
| Accession [info] | PS00841 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00658 |
Name and characterization of the entry
| Description [info] | XPG protein signature 1. |
| Pattern [info] |
[VILT]-[KREIT]-[PV]-x-[FYIL]-[VI]-[FW]-D-G-x(2)-[PILHSTF]-x-[LVCQMFAKS]- K. |
Numerical results [info]
| Total number of hits | 189 in 189 different sequences |
| Number of true positive hits | 189 in 189 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 26 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 87.91 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
189 sequences
DIN7_YEAST (Q12086), ERCC5_HUMAN (P28715), ERCC5_MOUSE (P35689), ERCC5_XENLA (P14629), EXO1_DANRE (Q803U7), EXO1_DROME (Q24558), EXO1_HUMAN (Q9UQ84), EXO1_MOUSE (Q9QZ11), EXO1_ORYSJ (Q60GC1), EXO1_SCHPO (P53695), EXO1_XENLA (Q9W6K2), EXO1_YEAST (P39875), FEN11_LACBS (B0DSN9), FEN11_ORYSI (B8AW67), FEN11_ORYSJ (Q9SXQ6), FEN11_PHYPA (A9S0B8), FEN11_SORBI (C5YUK3), FEN12_LACBS (B0E412), FEN12_ORYSI (B8AMS4), FEN12_ORYSJ (Q75LI2), FEN12_PHYPA (A9U328), FEN12_SORBI (C5WU23), FEN1A_DANRE (Q6TNU4), FEN1A_XENLA (P70040), FEN1B_XENLA (P70054), FEN1_AEDAE (Q178M1), FEN1_AJECH (C6HQJ2), FEN1_AJECN (A6QV55), FEN1_AJEDR (C5GPA7), FEN1_ANOFI (C3KJE6), FEN1_ANOGA (Q7Q323), FEN1_ARATH (O65251), FEN1_ARTOC (C5FZT5), FEN1_ASPCL (A1CJ75), FEN1_ASPFC (B0XZ33), FEN1_ASPFN (B8NV37), FEN1_ASPFU (Q4WWJ1), FEN1_ASPNC (A5ABU3), FEN1_ASPTN (Q0CBS0), FEN1_BLAGS (C5JVG7), FEN1_BOVIN (Q58DH8), FEN1_BRAFL (C3ZBT0), FEN1_BRUMA (A8QCH0), FEN1_CAEBR (A8XL25), FEN1_CAEEL (Q9N3T2), FEN1_CANAL (Q5A6K8), FEN1_CANAW (C4YLS2), FEN1_CANDC (B9WLQ5), FEN1_CANGA (Q6FM28), FEN1_CANTT (C5M2X8), FEN1_CHICK (Q5ZLN4), FEN1_CHLRE (A8J2Z9), FEN1_CLAL4 (C4YBJ8), FEN1_COPC7 (A8NQC2), FEN1_COPCI (Q76F73), FEN1_CRYMR (B6AFP1), FEN1_CRYNB (P0CS61), FEN1_CRYNJ (P0CS60), FEN1_CRYPI (A3FPN7), FEN1_DEBHA (Q6BLF4), FEN1_DICDI (Q54NU0), FEN1_DROAN (B3MDA3), FEN1_DROER (B3NP61), FEN1_DROGR (B4J6M4), FEN1_DROME (Q7K7A9), FEN1_DROMO (B4KNM1), FEN1_DROPE (B4GIM3), FEN1_DROPS (B5DUR8), FEN1_DROSE (B4HTA1), FEN1_DROSI (B4QIG6), FEN1_DROVI (B4LM90), FEN1_DROWI (B4MR84), FEN1_DROYA (B4P5U9), FEN1_EMENI (Q5B9L6), FEN1_ENTDS (B0EN90), FEN1_ENTH1 (C4M6G8), FEN1_EREGS (Q75DS8), FEN1_FUSV7 (C7Z125), FEN1_GLOMM (D3TQJ5), FEN1_HETP5 (D3BN56), FEN1_HUMAN (P39748), FEN1_KLULA (Q6CLH4), FEN1_KOMPG (C4QZ20), FEN1_LACTC (C5DGG4), FEN1_LEIBR (A4HFE4), FEN1_LEIIN (A4I2L4), FEN1_LEIMA (Q4FYU7), FEN1_LODEL (A5E121), FEN1_MACFA (Q4R5U5), FEN1_MAGO7 (A4QS18), FEN1_MAIZE (B4FHY0), FEN1_MICCC (C1E3X9), FEN1_MONBE (A9VB27), FEN1_MOUSE (P39749), FEN1_NAEGR (D2V434), FEN1_NEMVE (A7RRJ0), FEN1_NEOFI (A1D8A4), FEN1_NEUCR (A7UW97), FEN1_OSMMO (C1BM18), FEN1_OSTLU (A4S1G4), FEN1_OSTTA (Q013G9), FEN1_PENRW (B6HEM2), FEN1_PHANO (Q0UZR3), FEN1_PHATC (B7G7Y7), FEN1_PHYIT (D0MY34), FEN1_PICGU (A5DCF5), FEN1_PICST (A3M056), FEN1_PLABA (Q4Z015), FEN1_PLACU (Q4XXP8), FEN1_PLAF7 (Q7K734), FEN1_PLAFA (Q9GZ01), FEN1_PLAKH (B3L014), FEN1_PLAVS (A5KAL1), FEN1_PLAYO (Q7RME3), FEN1_PYRTR (B2VTT3), FEN1_RAT(Q5XIP6), FEN1_SALSA (B9EMY6), FEN1_SCHJY (B6JYI7), FEN1_SCHPO (P39750), FEN1_SHEEP (C8BKD0), FEN1_SORMK (D1ZT73), FEN1_SOYBN (C6TEX6), FEN1_TALMQ (B6QT52), FEN1_TALSN (B8MNF2), FEN1_THAPS (B8C6S5), FEN1_TRIAD (B3RVF0), FEN1_TRYB2 (Q57WW6), FEN1_TRYB9 (C9ZKW4), FEN1_TRYCC (Q4DKQ5), FEN1_UNCRE (C4JDR3), FEN1_USTMA (Q4P1V1), FEN1_VANPO (A7TJ59), FEN1_XENTR (B1H158), FEN1_XIPMA (Q5I4H3), FEN1_YARLI (Q6C116), FEN1_YEAS1 (B3LQY3), FEN1_YEAS2 (C7GVJ8), FEN1_YEAS7 (A6ZZK4), FEN1_YEAS8 (C8ZC62), FEN1_YEAST (P26793), FEN1_ZYGRC (C5DZA9), FEN_AERPE (Q9YFY5), FEN_ARCFU (O29975), FEN_CALMQ (A8M9L3), FEN_CENSY (A0RU95), FEN_HALS3 (B0R5F5), FEN_HALSA (Q9HQ27), FEN_HALWD (Q18HK0), FEN_IGNH4 (A8AAC1), FEN_KORCO (B1L6R9), FEN_METAC (Q8TIY5), FEN_METB6 (A7IA59), FEN_METBF (Q46D63), FEN_METBU (Q12UT1), FEN_METHJ (Q2FNC9), FEN_METKA (Q8TXU4), FEN_METLZ (A2SQC6), FEN_METMA (Q8PYF6), FEN_METMJ (A3CWV2), FEN_METPE (B8GIA0), FEN_METS3 (A5UL52), FEN_METST (Q2NFD4), FEN_METTH (O27670), FEN_METTP (A0B9M7), FEN_NANEQ (P61942), FEN_NATPD (Q3IPG8), FEN_NITMS (A9A4B0), FEN_PICTO (Q6L2I9), FEN_PYRAB (Q9V0P9), FEN_PYRAE (Q8ZYN2), FEN_PYRAR (A4WNC4), FEN_PYRCJ (A3MY15), FEN_PYRFU (O93634), FEN_PYRHO (O50123), FEN_PYRIL (A1RSC7), FEN_PYRNV (B1YC46), FEN_SACS2 (Q980U8), FEN_SULAC (Q4JAN1), FEN_SULTO (Q976H6), FEN_THEAC (Q9HJD4), FEN_THEGJ (C5A639), FEN_THEKO (Q5JGN0), FEN_THEON (B6YWX4), FEN_THEPD (A1RWY2), FEN_THESM (C6A1U9), FEN_THEVO (Q97B98), RAD13_SCHPO (P28706), RAD2_YEAST (P07276), UVH3_ARATH (Q9ATY5)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
26 sequences
EXO1_ARATH (Q8L6Z7), FEN11_PARTE (A0CXT3), FEN12_PARTE (A0CYG2), FEN1B_DANRE (B0UXL7), FEN1_BABBO (A7AX58), FEN1_ENCCU (Q8SS91), FEN1_ENTBH (B7XHS8), FEN1_GIAIC (A8B672), FEN1_TETTS (A4VDN2), FEN1_THEAN (Q4UFP0), FEN1_THEPA (Q4N3S6), FEN_HALMA (Q5V5T7), FEN_HYPBU (A2BMI0), FEN_META3 (A6UX46), FEN_METAR (Q0W6I0), FEN_METJA (Q58839), FEN_STAMF (A3DMG2), GENL1_ARATH (Q9LPD2), GENL1_ORYSJ (Q64MA3), GENL2_ARATH (Q9M2Z3), GENL2_ORYSJ (Q8W5R1), GEN_DROME (Q9VRJ0), GEN_DROPS (Q29FC1), GEN_HUMAN (Q17RS7), GEN_MOUSE (Q8BMI4), VF369_IIV6 (Q91FF5)» more |
| PDB [Detailed view] |
51 PDB
1B43; 1MC8; 1RXV; 1RXW; 1UL1; 2IZO; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB; 4Q0R; 4Q0W; 4Q0Z; 4Q10; 4WA8; 5FV7; 5K97; 5KSE; 5UZV; 5V04; 5V05; 5V06; 5V07; 5V08; 5V09; 5V0A; 5V0B; 5V0C; 5V0D; 5V0E; 5ZOD; 5ZOE; 5ZOF; 5ZOG; 6TNZ; 6TUR; 6TUS; 6TUW; 6TUX; 6VBH; 7MXQ; 7MXR; 7MXS; 7MXT; 7MXU; 7MXV; 7MXW; 7MXX; 7QO1 » more |