PROSITE entry PS00842

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	XPG_2
Accession [info]	PS00842
Entry type [info]	PATTERN
Date [info]	01-OCT-1993 CREATED; 01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00658

Name and characterization of the entry

Description [info]	XPG protein signature 2.
Pattern [info]	[GSN]-[LIVM]-[PERD]-[FYSCV]-[LIVM]-x-A-P-x-E-A-[DE]-[PAS]-[QSE]-[CLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	122 in 122 different sequences
Number of true positive hits	122 in 122 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	42
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	74.39 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

122 sequences

DIN7_YEAST  (Q12086), ERCC5_HUMAN (P28715), ERCC5_MOUSE (P35689),

ERCC5_XENLA (P14629), EXO1_ARATH  (Q8L6Z7), EXO1_DANRE  (Q803U7), 
EXO1_DROME  (Q24558), EXO1_HUMAN  (Q9UQ84), EXO1_MOUSE  (Q9QZ11), 
EXO1_SCHPO  (P53695), EXO1_XENLA  (Q9W6K2), EXO1_YEAST  (P39875), 
FEN11_LACBS (B0DSN9), FEN11_ORYSI (B8AW67), FEN11_ORYSJ (Q9SXQ6), 
FEN11_PHYPA (A9S0B8), FEN11_SORBI (C5YUK3), FEN12_LACBS (B0E412), 
FEN12_ORYSI (B8AMS4), FEN12_ORYSJ (Q75LI2), FEN12_PHYPA (A9U328), 
FEN12_SORBI (C5WU23), FEN1A_DANRE (Q6TNU4), FEN1_AEDAE  (Q178M1), 
FEN1_AJECH  (C6HQJ2), FEN1_AJECN  (A6QV55), FEN1_AJEDR  (C5GPA7), 
FEN1_ANOGA  (Q7Q323), FEN1_ARTOC  (C5FZT5), FEN1_ASPCL  (A1CJ75), 
FEN1_ASPFC  (B0XZ33), FEN1_ASPFN  (B8NV37), FEN1_ASPFU  (Q4WWJ1), 
FEN1_ASPNC  (A5ABU3), FEN1_ASPTN  (Q0CBS0), FEN1_BLAGS  (C5JVG7), 
FEN1_BOVIN  (Q58DH8), FEN1_BRAFL  (C3ZBT0), FEN1_BRUMA  (A8QCH0), 
FEN1_CAEBR  (A8XL25), FEN1_CAEEL  (Q9N3T2), FEN1_CANAL  (Q5A6K8), 
FEN1_CANAW  (C4YLS2), FEN1_CANDC  (B9WLQ5), FEN1_CANGA  (Q6FM28), 
FEN1_CHICK  (Q5ZLN4), FEN1_CHLRE  (A8J2Z9), FEN1_CLAL4  (C4YBJ8), 
FEN1_COPC7  (A8NQC2), FEN1_COPCI  (Q76F73), FEN1_CRYNB  (P0CS61), 
FEN1_CRYNJ  (P0CS60), FEN1_CRYPI  (A3FPN7), FEN1_DEBHA  (Q6BLF4), 
FEN1_DROAN  (B3MDA3), FEN1_DROER  (B3NP61), FEN1_DROGR  (B4J6M4), 
FEN1_DROME  (Q7K7A9), FEN1_DROMO  (B4KNM1), FEN1_DROPE  (B4GIM3), 
FEN1_DROPS  (B5DUR8), FEN1_DROSE  (B4HTA1), FEN1_DROSI  (B4QIG6), 
FEN1_DROVI  (B4LM90), FEN1_DROWI  (B4MR84), FEN1_DROYA  (B4P5U9), 
FEN1_EMENI  (Q5B9L6), FEN1_EREGS  (Q75DS8), FEN1_FUSV7  (C7Z125), 
FEN1_GLOMM  (D3TQJ5), FEN1_HUMAN  (P39748), FEN1_KLULA  (Q6CLH4), 
FEN1_KOMPG  (C4QZ20), FEN1_LACTC  (C5DGG4), FEN1_LEIBR  (A4HFE4), 
FEN1_LEIIN  (A4I2L4), FEN1_LEIMA  (Q4FYU7), FEN1_LODEL  (A5E121), 
FEN1_MACFA  (Q4R5U5), FEN1_MAIZE  (B4FHY0), FEN1_MONBE  (A9VB27), 
FEN1_MOUSE  (P39749), FEN1_NAEGR  (D2V434), FEN1_NEMVE  (A7RRJ0), 
FEN1_NEOFI  (A1D8A4), FEN1_NEUCR  (A7UW97), FEN1_OSMMO  (C1BM18), 
FEN1_PENRW  (B6HEM2), FEN1_PHANO  (Q0UZR3), FEN1_PICGU  (A5DCF5), 
FEN1_PICST  (A3M056), FEN1_PLAKH  (B3L014), FEN1_PLAVS  (A5KAL1), 
FEN1_PYRO7  (A4QS18), FEN1_PYRTR  (B2VTT3), FEN1_RAT(Q5XIP6), 
FEN1_SALSA  (B9EMY6), FEN1_SCHJY  (B6JYI7), FEN1_SCHPO  (P39750), 
FEN1_SHEEP  (C8BKD0), FEN1_SORMK  (D1ZT73), FEN1_SOYBN  (C6TEX6), 
FEN1_TALMQ  (B6QT52), FEN1_TALSN  (B8MNF2), FEN1_TETTS  (A4VDN2), 
FEN1_TRIAD  (B3RVF0), FEN1_TRYB2  (Q57WW6), FEN1_TRYB9  (C9ZKW4), 
FEN1_TRYCC  (Q4DKQ5), FEN1_UNCRE  (C4JDR3), FEN1_USTMA  (Q4P1V1), 
FEN1_VANPO  (A7TJ59), FEN1_XIPMA  (Q5I4H3), FEN1_YEAS1  (B3LQY3), 
FEN1_YEAS2  (C7GVJ8), FEN1_YEAS7  (A6ZZK4), FEN1_YEAS8  (C8ZC62), 
FEN1_YEAST  (P26793), FEN1_ZYGRC  (C5DZA9), RAD13_SCHPO (P28706), 
RAD2_YEAST  (P07276), UVH3_ARATH  (Q9ATY5)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

42 sequences

EXO1_ORYSJ  (Q60GC1), FEN11_PARTE (A0CXT3), FEN12_PARTE (A0CYG2),

FEN1A_XENLA (P70040), FEN1B_DANRE (B0UXL7), FEN1B_XENLA (P70054), 
FEN1_ANOFI  (C3KJE6), FEN1_ARATH  (O65251), FEN1_BABBO  (A7AX58), 
FEN1_CANTT  (C5M2X8), FEN1_CRYMR  (B6AFP1), FEN1_DICDI  (Q54NU0), 
FEN1_ENCCU  (Q8SS91), FEN1_ENTBH  (B7XHS8), FEN1_ENTDS  (B0EN90), 
FEN1_ENTH1  (C4M6G8), FEN1_GIAIC  (A8B672), FEN1_HETP5  (D3BN56), 
FEN1_MICCC  (C1E3X9), FEN1_OSTLU  (A4S1G4), FEN1_OSTTA  (Q013G9), 
FEN1_PHATC  (B7G7Y7), FEN1_PHYIT  (D0MY34), FEN1_PLABA  (Q4Z015), 
FEN1_PLACU  (Q4XXP8), FEN1_PLAF7  (Q7K734), FEN1_PLAFA  (Q9GZ01), 
FEN1_PLAYO  (Q7RME3), FEN1_THAPS  (B8C6S5), FEN1_THEAN  (Q4UFP0), 
FEN1_THEPA  (Q4N3S6), FEN1_XENTR  (B1H158), FEN1_YARLI  (Q6C116), 
GENL1_ARATH (Q9LPD2), GENL1_ORYSJ (Q64MA3), GENL2_ARATH (Q9M2Z3), 
GENL2_ORYSJ (Q8W5R1), GEN_DROME   (Q9VRJ0), GEN_DROPS   (Q29FC1), 
GEN_HUMAN   (Q17RS7), GEN_MOUSE   (Q8BMI4), VF369_IIV6  (Q91FF5)

» more

PDB
[Detailed view]

46 PDB

1UL1; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB; 4Q0R; 4Q0W; 4Q0Z; 4Q10; 5FV7; 5K97; 5KSE; 5UM9; 5UZV; 5V04; 5V05; 5V06; 5V07; 5V08; 5V09; 5V0A; 5V0B; 5V0C; 5V0D; 5V0E; 5ZOD; 5ZOE; 5ZOF; 5ZOG; 6TNZ; 6TUR; 6TUS; 6TUW; 6TUX; 6VBH; 7MXQ; 7MXR; 7MXS; 7MXT; 7MXU; 7MXV; 7MXW; 7MXX; 7QO1
» more