PROSITE entry PS00842

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General information about the entry

Entry name [info]	XPG_2
Accession [info]	PS00842
Entry type [info]	PATTERN
Date [info]	01-OCT-1993 CREATED; 01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00658

Name and characterization of the entry

Description [info]	XPG protein signature 2.
Pattern [info]	[GSN]-[LIVM]-[PERD]-[FYSCV]-[LIVM]-x-A-P-x-E-A-[DE]-[PAS]-[QSE]-[CLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	122 in 122 different sequences
Number of true positive hits	122 in 122 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	42
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	74.39 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info]	1
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

122 sequences

DIN7_YEAST  (Q12086), ERCC5_HUMAN (P28715), ERCC5_MOUSE (P35689),

ERCC5_XENLA (P14629), EXO1_ARATH  (Q8L6Z7), EXO1_DANRE  (Q803U7), 
EXO1_DROME  (Q24558), EXO1_HUMAN  (Q9UQ84), EXO1_MOUSE  (Q9QZ11), 
EXO1_SCHPO  (P53695), EXO1_XENLA  (Q9W6K2), EXO1_YEAST  (P39875), 
FEN11_LACBS (B0DSN9), FEN11_ORYSI (B8AW67), FEN11_ORYSJ (Q9SXQ6), 
FEN11_PHYPA (A9S0B8), FEN11_SORBI (C5YUK3), FEN12_LACBS (B0E412), 
FEN12_ORYSI (B8AMS4), FEN12_ORYSJ (Q75LI2), FEN12_PHYPA (A9U328), 
FEN12_SORBI (C5WU23), FEN1A_DANRE (Q6TNU4), FEN1_AEDAE  (Q178M1), 
FEN1_AJECH  (C6HQJ2), FEN1_AJECN  (A6QV55), FEN1_AJEDR  (C5GPA7), 
FEN1_ANOGA  (Q7Q323), FEN1_ARTOC  (C5FZT5), FEN1_ASPCL  (A1CJ75), 
FEN1_ASPFC  (B0XZ33), FEN1_ASPFN  (B8NV37), FEN1_ASPFU  (Q4WWJ1), 
FEN1_ASPNC  (A5ABU3), FEN1_ASPTN  (Q0CBS0), FEN1_BLAGS  (C5JVG7), 
FEN1_BOVIN  (Q58DH8), FEN1_BRAFL  (C3ZBT0), FEN1_BRUMA  (A8QCH0), 
FEN1_CAEBR  (A8XL25), FEN1_CAEEL  (Q9N3T2), FEN1_CANAL  (Q5A6K8), 
FEN1_CANAW  (C4YLS2), FEN1_CANDC  (B9WLQ5), FEN1_CANGA  (Q6FM28), 
FEN1_CHICK  (Q5ZLN4), FEN1_CHLRE  (A8J2Z9), FEN1_CLAL4  (C4YBJ8), 
FEN1_COPC7  (A8NQC2), FEN1_COPCI  (Q76F73), FEN1_CRYNB  (P0CS61), 
FEN1_CRYNJ  (P0CS60), FEN1_CRYPI  (A3FPN7), FEN1_DEBHA  (Q6BLF4), 
FEN1_DROAN  (B3MDA3), FEN1_DROER  (B3NP61), FEN1_DROGR  (B4J6M4), 
FEN1_DROME  (Q7K7A9), FEN1_DROMO  (B4KNM1), FEN1_DROPE  (B4GIM3), 
FEN1_DROPS  (B5DUR8), FEN1_DROSE  (B4HTA1), FEN1_DROSI  (B4QIG6), 
FEN1_DROVI  (B4LM90), FEN1_DROWI  (B4MR84), FEN1_DROYA  (B4P5U9), 
FEN1_EMENI  (Q5B9L6), FEN1_EREGS  (Q75DS8), FEN1_FUSV7  (C7Z125), 
FEN1_GLOMM  (D3TQJ5), FEN1_HUMAN  (P39748), FEN1_KLULA  (Q6CLH4), 
FEN1_KOMPG  (C4QZ20), FEN1_LACTC  (C5DGG4), FEN1_LEIBR  (A4HFE4), 
FEN1_LEIIN  (A4I2L4), FEN1_LEIMA  (Q4FYU7), FEN1_LODEL  (A5E121), 
FEN1_MACFA  (Q4R5U5), FEN1_MAIZE  (B4FHY0), FEN1_MONBE  (A9VB27), 
FEN1_MOUSE  (P39749), FEN1_NAEGR  (D2V434), FEN1_NEMVE  (A7RRJ0), 
FEN1_NEOFI  (A1D8A4), FEN1_NEUCR  (A7UW97), FEN1_OSMMO  (C1BM18), 
FEN1_PENRW  (B6HEM2), FEN1_PHANO  (Q0UZR3), FEN1_PICGU  (A5DCF5), 
FEN1_PICST  (A3M056), FEN1_PLAKH  (B3L014), FEN1_PLAVS  (A5KAL1), 
FEN1_PYRO7  (A4QS18), FEN1_PYRTR  (B2VTT3), FEN1_RAT(Q5XIP6), 
FEN1_SALSA  (B9EMY6), FEN1_SCHJY  (B6JYI7), FEN1_SCHPO  (P39750), 
FEN1_SHEEP  (C8BKD0), FEN1_SORMK  (D1ZT73), FEN1_SOYBN  (C6TEX6), 
FEN1_TALMQ  (B6QT52), FEN1_TALSN  (B8MNF2), FEN1_TETTS  (A4VDN2), 
FEN1_TRIAD  (B3RVF0), FEN1_TRYB2  (Q57WW6), FEN1_TRYB9  (C9ZKW4), 
FEN1_TRYCC  (Q4DKQ5), FEN1_UNCRE  (C4JDR3), FEN1_USTMA  (Q4P1V1), 
FEN1_VANPO  (A7TJ59), FEN1_XIPMA  (Q5I4H3), FEN1_YEAS1  (B3LQY3), 
FEN1_YEAS2  (C7GVJ8), FEN1_YEAS7  (A6ZZK4), FEN1_YEAS8  (C8ZC62), 
FEN1_YEAST  (P26793), FEN1_ZYGRC  (C5DZA9), RAD13_SCHPO (P28706), 
RAD2_YEAST  (P07276), UVH3_ARATH  (Q9ATY5)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

42 sequences

EXO1_ORYSJ  (Q60GC1), FEN11_PARTE (A0CXT3), FEN12_PARTE (A0CYG2),

FEN1A_XENLA (P70040), FEN1B_DANRE (B0UXL7), FEN1B_XENLA (P70054), 
FEN1_ANOFI  (C3KJE6), FEN1_ARATH  (O65251), FEN1_BABBO  (A7AX58), 
FEN1_CANTT  (C5M2X8), FEN1_CRYMR  (B6AFP1), FEN1_DICDI  (Q54NU0), 
FEN1_ENCCU  (Q8SS91), FEN1_ENTBH  (B7XHS8), FEN1_ENTDS  (B0EN90), 
FEN1_ENTH1  (C4M6G8), FEN1_GIAIC  (A8B672), FEN1_HETP5  (D3BN56), 
FEN1_MICCC  (C1E3X9), FEN1_OSTLU  (A4S1G4), FEN1_OSTTA  (Q013G9), 
FEN1_PHATC  (B7G7Y7), FEN1_PHYIT  (D0MY34), FEN1_PLABA  (Q4Z015), 
FEN1_PLACU  (Q4XXP8), FEN1_PLAF7  (Q7K734), FEN1_PLAFA  (Q9GZ01), 
FEN1_PLAYO  (Q7RME3), FEN1_THAPS  (B8C6S5), FEN1_THEAN  (Q4UFP0), 
FEN1_THEPA  (Q4N3S6), FEN1_XENTR  (B1H158), FEN1_YARLI  (Q6C116), 
GENL1_ARATH (Q9LPD2), GENL1_ORYSJ (Q64MA3), GENL2_ARATH (Q9M2Z3), 
GENL2_ORYSJ (Q8W5R1), GEN_DROME   (Q9VRJ0), GEN_DROPS   (Q29FC1), 
GEN_HUMAN   (Q17RS7), GEN_MOUSE   (Q8BMI4), VF369_IIV6  (Q91FF5)

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PDB
[Detailed view]

46 PDB

1UL1; 3Q8K; 3Q8L; 3Q8M; 3QE9; 3QEA; 3QEB; 4Q0R; 4Q0W; 4Q0Z; 4Q10; 5FV7; 5K97; 5KSE; 5UM9; 5UZV; 5V04; 5V05; 5V06; 5V07; 5V08; 5V09; 5V0A; 5V0B; 5V0C; 5V0D; 5V0E; 5ZOD; 5ZOE; 5ZOF; 5ZOG; 6TNZ; 6TUR; 6TUS; 6TUW; 6TUX; 6VBH; 7MXQ; 7MXR; 7MXS; 7MXT; 7MXU; 7MXV; 7MXW; 7MXX; 7QO1
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