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PROSITE entry PS00848


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General information about the entry

Entry name [info] COX5B_1
Accession [info] PS00848
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-OCT-1993 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00663

Name and characterization of the entry

Description [info] Cytochrome c oxidase subunit Vb, zinc binding region signature.
Pattern [info] 
[LIVM](2)-[FYW]-x(10)-C-x(2)-C-G-x(2)-[FY]-K-L.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 13 in 13 different sequences
Number of true positive hits 10 in 10 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 76.92 %
Recall (true positives / (true positives + false negatives)) 76.92 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] zinc(?) at position 4
Site [info] zinc(?) at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 10 sequences 

COX4_SCHPO  (P79010), COX4_YEAST  (P04037), COX5B_BOVIN (P00428), 

COX5B_HUMAN (P10606), COX5B_MOUSE (P19536), COX5B_PIG   (Q5S3G4), 
COX5B_PONAB (Q5REG2), COX5B_RAT   (P12075), COX5B_VULVU (Q710D6), 
COX5_DICDI  (P29505)
» more

UniProtKB/Swiss-Prot
False negative sequences		 3 sequences 

COX4_NEUCR  (P06809), CX5B1_ARATH (Q9LW15), CX5B2_ARATH (Q9SSB8)


				
	

	

		UniProtKB/Swiss-Prot
'Partial' sequences		
		
			4 sequences
			


			
COX5B_SOLTU (P80499), COX5B_THUOB (P80974), CX5B1_ONCMY (P80329), 

			
CX5B2_ONCMY (P80330)


			
			» more
			


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			3 sequences
			


			
ACCD_CLOP1  (Q0TRG3), ACCD_CLOPE  (Q8XLG6), ACCD_CLOPS  (Q0STU2)


				
	

	

		PDB
[Detailed view]		
		
			97 PDB
			


			1OCC; 1OCO; 1OCR; 1OCZ; 1V54; 1V55; 2DYR; 2DYS; 2EIJ; 2EIK; 2EIL; 2EIM; 
			
				2EIN; 2OCC; 2ODX; 2Y69; 2YBB; 2ZXW; 3ABK; 3ABL; 3ABM; 3AG1; 3AG2; 3AG3; 
				3AG4; 3ASN; 3ASO; 3WG7; 3X2Q; 5B1A; 5B1B; 5B3S; 5GPN; 5IY5; 5LUF; 5W97; 
				5WAU; 5X19; 5X1B; 5X1F; 5XDQ; 5XDX; 5XTH; 5XTI; 5Z62; 5Z84; 5Z85; 5Z86; 
				5ZCO; 5ZCP; 5ZCQ; 6GIQ; 6HU9; 6J8M; 6JUW; 6JY3; 6JY4; 6NKN; 6NMF; 6NMP; 
				6T0B; 6T15; 6YMX; 6YMY; 7COH; 7CP5; 7D5W; 7D5X; 7DGQ; 7DGR; 7DGS; 7DKF; 
				7EV7; 7O37; 7O3C; 7O3E; 7THU; 7TIE; 7TIH; 7TII; 7VUW; 7VVR; 7W3E; 7XMA; 
				7XMB; 7Y44; 7YPY; 7Z10; 8C8Q; 8D4T; 8DH6; 8E7S; 8EC0; 8GVM; 8H8R; 8H8S; 
				8IJN
			
			

			» more