Home  |  Contact
Entry: PS00848

General information about the entry

Entry name [info] COX5B_1
Accession [info] PS00848
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-OCT-1993 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00663

Name and characterization of the entry

Description [info] Cytochrome c oxidase subunit Vb, zinc binding region signature.
Pattern [info] 
[LIVM](2)-[FYW]-x(10)-C-x(2)-C-G-x(2)-[FY]-K-L.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 13 in 13 different sequences
Number of true positive hits 10 in 10 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 3
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 76.92 %
Recall (true positives / (true positives + false negatives)) 76.92 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] zinc(?) at position 4
Site [info] zinc(?) at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 10 sequences 

COX4_SCHPO  (P79010    ), COX4_YEAST  (P04037    ), COX5B_BOVIN (P00428    ), 

COX5B_HUMAN (P10606    ), COX5B_MOUSE (P19536    ), COX5B_PIG   (Q5S3G4    ), 
COX5B_PONAB (Q5REG2    ), COX5B_RAT   (P12075    ), COX5B_VULVU (Q710D6    ), 
COX5_DICDI  (P29505    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 3 sequences 

COX4_NEUCR  (P06809    ), CX5B1_ARATH (Q9LW15    ), CX5B2_ARATH (Q9SSB8    )


				
	

	

		UniProtKB/Swiss-Prot
'Partial' sequences		
		
			4 sequences
			


			
COX5B_SOLTU (P80499    ), COX5B_THUOB (P80974    ), CX5B1_ONCMY (P80329    ), 

			
CX5B2_ONCMY (P80330    )


			
			» more
			


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			3 sequences
			


			
ACCD_CLOP1  (Q0TRG3    ), ACCD_CLOPE  (Q8XLG6    ), ACCD_CLOPS  (Q0STU2    )


				
	

	

		PDB
[Detailed view]		
		
			62 PDB
			


			1OCC; 1OCO; 1OCR; 1OCZ; 1V54; 1V55; 2DYR; 2DYS; 2EIJ; 2EIK; 2EIL; 2EIM; 
			
				2EIN; 2OCC; 2ODX; 2Y69; 2YBB; 2ZXW; 3ABK; 3ABL; 3ABM; 3AG1; 3AG2; 3AG3; 
				3AG4; 3ASN; 3ASO; 3WG7; 3X2Q; 5B1A; 5B1B; 5B3S; 5GPN; 5IY5; 5LUF; 5W97; 
				5WAU; 5X19; 5X1B; 5X1F; 5XDQ; 5XDX; 5XTH; 5XTI; 5Z62; 5Z84; 5Z85; 5Z86; 
				5ZCO; 5ZCP; 5ZCQ; 6GIQ; 6HU9; 6J8M; 6JUW; 6JY3; 6JY4; 6NKN; 6NMF; 6NMP; 
				6T0B; 6T15
			
			

			» more

				
	





View entry in original PROSITE format


View entry in raw text format (no links)


Direct ScanProsite submission