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PROSITE entry PS00850


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General information about the entry

Entry name [info] GLY_RADICAL_1
Accession [info] PS00850
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00665

Name and characterization of the entry

Description [info] Glycine radical domain signature.
Pattern [info]
[STIV]-x-R-[IVT]-[CSA]-G-Y-{GI}-[GACV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_03 which contains 571'609 sequence entries.


Total number of hits 131 in 131 different sequences
Number of true positive hits 123 in 123 different sequences
Number of 'unknown' hits 0
Number of false positive hits 8 in 8 different sequences
Number of false negative sequences 9
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 93.89 %
Recall (true positives / (true positives + false negatives)) 93.18 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] radical at position 6
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
123 sequences

CUTC_OLEA2  (Q30W70), GRCA_ACTP2  (A3MZ79), GRCA_ACTP7  (B3H0M3), 
GRCA_ACTPJ  (B0BTB3), GRCA_ACTSZ  (A6VLV5), GRCA_ALIF1  (Q5E2Y6), 
GRCA_ALIFM  (B5FAJ9), GRCA_ALISL  (B6EKY5), GRCA_BPT4   (P13316), 
GRCA_CITK8  (A8AD08), GRCA_CROS8  (A7MH19), GRCA_ECO24  (A7ZQ24), 
GRCA_ECO27  (B7UH18), GRCA_ECO45  (B7MIR4), GRCA_ECO55  (B7LDH2), 
GRCA_ECO57  (P68067), GRCA_ECO5E  (B5Z153), GRCA_ECO7I  (B7NRN5), 
GRCA_ECO81  (B7MYL2), GRCA_ECO8A  (B7M8J4), GRCA_ECOBW  (C4ZYK2), 
GRCA_ECODH  (B1XBQ6), GRCA_ECOHS  (A8A391), GRCA_ECOK1  (A1AEA9), 
GRCA_ECOL5  (Q0TEQ9), GRCA_ECOL6  (Q8FF10), GRCA_ECOLC  (B1IVP8), 
GRCA_ECOLI  (P68066), GRCA_ECOLU  (B7N6H0), GRCA_ECOSE  (B6I5F4), 
GRCA_ECOSM  (B1LP92), GRCA_EDWI9  (C5BAK4), GRCA_ENT38  (A4WDE8), 
GRCA_ERWT9  (B2VED1), GRCA_ESCF3  (B7LUY6), GRCA_GLAP5  (B8F6C4), 
GRCA_HAEDU  (Q7VMC2), GRCA_HAEI8  (Q4QPM7), GRCA_HAEIE  (A5UBC1), 
GRCA_HAEIG  (A5UFJ0), GRCA_HAEIN  (P44455), GRCA_HISS1  (Q0I272), 
GRCA_HISS2  (B0UWA8), GRCA_KLEP3  (B5XNF9), GRCA_KLEP7  (A6TCJ1), 
GRCA_MANSM  (Q65VN1), GRCA_PASMU  (Q9CPH6), GRCA_PECAS  (Q6D209), 
GRCA_PECCP  (C6DC10), GRCA_PHOPR  (Q6LUP6), GRCA_PROMH  (B4F057), 
GRCA_PSYIN  (A1SUE3), GRCA_SALA4  (B5F227), GRCA_SALAR  (A9MGW0), 
GRCA_SALCH  (Q57L55), GRCA_SALDC  (B5FRD8), GRCA_SALEP  (B5QTW0), 
GRCA_SALG2  (B5RD61), GRCA_SALHS  (B4TE27), GRCA_SALNS  (B4T289), 
GRCA_SALPA  (Q5PLH7), GRCA_SALPB  (A9N0W4), GRCA_SALPC  (C0PVZ1), 
GRCA_SALPK  (B5BAR8), GRCA_SALSV  (B4TS28), GRCA_SALTI  (Q8XFE0), 
GRCA_SALTY  (Q7CQ05), GRCA_SERLI  (P18953), GRCA_SERP5  (A8GI38), 
GRCA_SHIB3  (B2TYK2), GRCA_SHIBS  (Q31XQ5), GRCA_SHIDS  (Q32CU0), 
GRCA_SHIF8  (Q0T1S7), GRCA_SHIFL  (Q83K21), GRCA_SHISS  (Q3YYT6), 
GRCA_VIBA3  (B7VJ50), GRCA_VIBC1  (A7MS83), GRCA_VIBC3  (A5F5R7), 
GRCA_VIBCH  (Q9KPK6), GRCA_VIBCM  (C3LQD3), GRCA_VIBPA  (Q87SC7), 
GRCA_VIBVU  (Q8DEP5), GRCA_VIBVY  (Q7MNR2), GRCA_YERE8  (A1JKI9), 
GRCA_YERP3  (A7FFS5), GRCA_YERPA  (Q1C569), GRCA_YERPB  (B2KA62), 
GRCA_YERPE  (Q8ZD84), GRCA_YERPG  (A9R3Y7), GRCA_YERPN  (Q1CKF7), 
GRCA_YERPP  (A4TKZ1), GRCA_YERPS  (Q667T8), GRCA_YERPY  (B1JRB2), 
GRE1_ECOLI  (P32674), GRE2_ECOLI  (P75793), HPSG_BILW3  (E5Y7I4), 
ISLA_BILW3  (E5Y378), ISLA_DESDA  (B8J0R1), ISLA_NITV2  (Q727N1), 
ISLA_OLEA2  (Q312S2), NRDD_BPT4   (P07071), NRDD_ECOLI  (P28903), 
NRDD_HAEIN  (P43752), NRDD_SALTY  (Q9L646), PFLB_ECOLI  (P09373), 
PFLB_HAEIN  (P43753), PFLB_STAA3  (Q2FK44), PFLB_STAA8  (Q2G1D8), 
PFLB_STAAB  (Q2YV53), PFLB_STAAC  (Q5HJF4), PFLB_STAAM  (Q99WZ7), 
PFLB_STAAN  (Q7A7X6), PFLB_STAAR  (Q6GK90), PFLB_STAAS  (Q6GCQ0), 
PFLB_STAAW  (Q7A1W9), PFLB_STAEQ  (Q5HKH9), PFLB_STAES  (Q8CTX6), 
PFL_CHLRE   (P37836), PFL_CLOPA   (Q46266), PFL_LACLA   (O32797), 
PFL_LACLM   (O32799), PFL_STRMU   (Q59934), TDCE_ECOLI  (P42632)
» more

UniProtKB/Swiss-Prot
False negative sequences
9 sequences

BSSA_THAAR  (O87943), HPDL_CLOD6  (Q18CP5), HPDL_CLODC  (C9XIS5), 
HPDL_CLODI  (Q84F16), HPDL_CLODR  (C9YHW1), HPDL_CLOSL  (Q38HX4), 
HPFG_KLEOX  (A0A318FL05), HYPD_CLODI  (A0A031WDE4), IAD_TRASO   (A0A100YXA1)
» more

UniProtKB/Swiss-Prot
False positive sequences
8 sequences

AGLB1_ARCFU (O29918), AROB_THEFY  (Q47QY7), MAGI3_HUMAN (Q5TCQ9), 
PURA_PICTO  (Q6L2M3), VRTB_PENAE  (D7PHZ3), WHITE_LUCCU (Q05360), 
WRN_CAEEL   (Q19546), YR034_MIMIV (Q5UPB0)
» more

PDB
[Detailed view]
19 PDB

1CM5; 1H16; 1H17; 1H18; 1MZO; 2PFL; 3PFL; 5FAU; 5FAV; 5FAW; 5FAY; 5KDP; 5YMR; 6LON; 6ND3; 6OWR; 6VUE; 7KQ3; 7KQ4
» more