PROSITE entry PS00850
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General information about the entry
| Entry name [info] | GLY_RADICAL_1 |
| Accession [info] | PS00850 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00665 |
Name and characterization of the entry
| Description [info] | Glycine radical domain signature. |
| Pattern [info] |
[STIV]-x-R-[IVT]-[CSA]-G-Y-{GI}-[GACV].
|
Numerical results [info]
| Total number of hits | 131 in 131 different sequences |
| Number of true positive hits | 123 in 123 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 8 in 8 different sequences |
| Number of false negative sequences | 9 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 93.89 % |
| Recall (true positives / (true positives + false negatives)) | 93.18 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | radical at position 6 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
123 sequences
CUTC_OLEA2 (Q30W70), GRCA_ACTP2 (A3MZ79), GRCA_ACTP7 (B3H0M3), GRCA_ACTPJ (B0BTB3), GRCA_ACTSZ (A6VLV5), GRCA_ALIF1 (Q5E2Y6), GRCA_ALIFM (B5FAJ9), GRCA_ALISL (B6EKY5), GRCA_BPT4 (P13316), GRCA_CITK8 (A8AD08), GRCA_CROS8 (A7MH19), GRCA_ECO24 (A7ZQ24), GRCA_ECO27 (B7UH18), GRCA_ECO45 (B7MIR4), GRCA_ECO55 (B7LDH2), GRCA_ECO57 (P68067), GRCA_ECO5E (B5Z153), GRCA_ECO7I (B7NRN5), GRCA_ECO81 (B7MYL2), GRCA_ECO8A (B7M8J4), GRCA_ECOBW (C4ZYK2), GRCA_ECODH (B1XBQ6), GRCA_ECOHS (A8A391), GRCA_ECOK1 (A1AEA9), GRCA_ECOL5 (Q0TEQ9), GRCA_ECOL6 (Q8FF10), GRCA_ECOLC (B1IVP8), GRCA_ECOLI (P68066), GRCA_ECOLU (B7N6H0), GRCA_ECOSE (B6I5F4), GRCA_ECOSM (B1LP92), GRCA_EDWI9 (C5BAK4), GRCA_ENT38 (A4WDE8), GRCA_ERWT9 (B2VED1), GRCA_ESCF3 (B7LUY6), GRCA_GLAP5 (B8F6C4), GRCA_HAEDU (Q7VMC2), GRCA_HAEI8 (Q4QPM7), GRCA_HAEIE (A5UBC1), GRCA_HAEIG (A5UFJ0), GRCA_HAEIN (P44455), GRCA_HISS1 (Q0I272), GRCA_HISS2 (B0UWA8), GRCA_KLEP3 (B5XNF9), GRCA_KLEP7 (A6TCJ1), GRCA_MANSM (Q65VN1), GRCA_PASMU (Q9CPH6), GRCA_PECAS (Q6D209), GRCA_PECCP (C6DC10), GRCA_PHOPR (Q6LUP6), GRCA_PROMH (B4F057), GRCA_PSYIN (A1SUE3), GRCA_SALA4 (B5F227), GRCA_SALAR (A9MGW0), GRCA_SALCH (Q57L55), GRCA_SALDC (B5FRD8), GRCA_SALEP (B5QTW0), GRCA_SALG2 (B5RD61), GRCA_SALHS (B4TE27), GRCA_SALNS (B4T289), GRCA_SALPA (Q5PLH7), GRCA_SALPB (A9N0W4), GRCA_SALPC (C0PVZ1), GRCA_SALPK (B5BAR8), GRCA_SALSV (B4TS28), GRCA_SALTI (Q8XFE0), GRCA_SALTY (Q7CQ05), GRCA_SERLI (P18953), GRCA_SERP5 (A8GI38), GRCA_SHIB3 (B2TYK2), GRCA_SHIBS (Q31XQ5), GRCA_SHIDS (Q32CU0), GRCA_SHIF8 (Q0T1S7), GRCA_SHIFL (Q83K21), GRCA_SHISS (Q3YYT6), GRCA_VIBA3 (B7VJ50), GRCA_VIBC1 (A7MS83), GRCA_VIBC3 (A5F5R7), GRCA_VIBCH (Q9KPK6), GRCA_VIBCM (C3LQD3), GRCA_VIBPA (Q87SC7), GRCA_VIBVU (Q8DEP5), GRCA_VIBVY (Q7MNR2), GRCA_YERE8 (A1JKI9), GRCA_YERP3 (A7FFS5), GRCA_YERPA (Q1C569), GRCA_YERPB (B2KA62), GRCA_YERPE (Q8ZD84), GRCA_YERPG (A9R3Y7), GRCA_YERPN (Q1CKF7), GRCA_YERPP (A4TKZ1), GRCA_YERPS (Q667T8), GRCA_YERPY (B1JRB2), GRE1_ECOLI (P32674), GRE2_ECOLI (P75793), HPSG_BILW3 (E5Y7I4), ISLA_BILW3 (E5Y378), ISLA_DESDA (B8J0R1), ISLA_NITV2 (Q727N1), ISLA_OLEA2 (Q312S2), NRDD_BPT4 (P07071), NRDD_ECOLI (P28903), NRDD_HAEIN (P43752), NRDD_SALTY (Q9L646), PFLB_ECOLI (P09373), PFLB_HAEIN (P43753), PFLB_STAA3 (Q2FK44), PFLB_STAA8 (Q2G1D8), PFLB_STAAB (Q2YV53), PFLB_STAAC (Q5HJF4), PFLB_STAAM (Q99WZ7), PFLB_STAAN (Q7A7X6), PFLB_STAAR (Q6GK90), PFLB_STAAS (Q6GCQ0), PFLB_STAAW (Q7A1W9), PFLB_STAEQ (Q5HKH9), PFLB_STAES (Q8CTX6), PFL_CHLRE (P37836), PFL_CLOPA (Q46266), PFL_LACLA (O32797), PFL_LACLM (O32799), PFL_STRMU (Q59934), TDCE_ECOLI (P42632)» more
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| UniProtKB/Swiss-Prot False negative sequences |
9 sequences
BSSA_THAAR (O87943), HPDL_CLOD6 (Q18CP5), HPDL_CLODC (C9XIS5), HPDL_CLODI (Q84F16), HPDL_CLODR (C9YHW1), HPDL_CLOSL (Q38HX4), HPFG_KLEOX (A0A318FL05), HYPD_CLODI (A0A031WDE4), IAD_TRASO (A0A100YXA1)» more |
| UniProtKB/Swiss-Prot False positive sequences |
8 sequences
AGLB1_ARCFU (O29918), AROB_THEFY (Q47QY7), MAGI3_HUMAN (Q5TCQ9), PURA_PICTO (Q6L2M3), VRTB_PENAE (D7PHZ3), WHITE_LUCCU (Q05360), WRN_CAEEL (Q19546), YR034_MIMIV (Q5UPB0)» more |
| PDB [Detailed view] |
19 PDB
1CM5; 1H16; 1H17; 1H18; 1MZO; 2PFL; 3PFL; 5FAU; 5FAV; 5FAW; 5FAY; 5KDP; 5YMR; 6LON; 6ND3; 6OWR; 6VUE; 7KQ3; 7KQ4 » more |