![]() |
|
Entry: PS00850 |
Entry name [info] | GLY_RADICAL_1 |
Accession [info] | PS00850 |
Entry type [info] | PATTERN |
Date [info] |
01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00665 |
Description [info] | Glycine radical domain signature. |
Pattern [info] |
[STIV]-x-R-[IVT]-[CSA]-G-Y-{GI}-[GACV]. |
Total number of hits | 128 in 128 different sequences |
Number of true positive hits | 122 in 122 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 6 in 6 different sequences |
Number of false negative sequences | 7 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 95.31 % |
Recall (true positives / (true positives + false negatives)) | 94.57 % |
Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | radical at position 6 |
Version [info] | 2 |
UniProtKB/Swiss-Prot True positive sequences |
122 sequences
CUTC_DESAG (Q30W70 ), GRCA_ACTP2 (A3MZ79 ), GRCA_ACTP7 (B3H0M3 ), GRCA_ACTPJ (B0BTB3 ), GRCA_ACTSZ (A6VLV5 ), GRCA_ALIF1 (Q5E2Y6 ), GRCA_ALIFM (B5FAJ9 ), GRCA_ALISL (B6EKY5 ), GRCA_BPT4 (P13316 ), GRCA_CITK8 (A8AD08 ), GRCA_CROS8 (A7MH19 ), GRCA_ECO24 (A7ZQ24 ), GRCA_ECO27 (B7UH18 ), GRCA_ECO45 (B7MIR4 ), GRCA_ECO55 (B7LDH2 ), GRCA_ECO57 (P68067 ), GRCA_ECO5E (B5Z153 ), GRCA_ECO7I (B7NRN5 ), GRCA_ECO81 (B7MYL2 ), GRCA_ECO8A (B7M8J4 ), GRCA_ECOBW (C4ZYK2 ), GRCA_ECODH (B1XBQ6 ), GRCA_ECOHS (A8A391 ), GRCA_ECOK1 (A1AEA9 ), GRCA_ECOL5 (Q0TEQ9 ), GRCA_ECOL6 (Q8FF10 ), GRCA_ECOLC (B1IVP8 ), GRCA_ECOLI (P68066 ), GRCA_ECOLU (B7N6H0 ), GRCA_ECOSE (B6I5F4 ), GRCA_ECOSM (B1LP92 ), GRCA_EDWI9 (C5BAK4 ), GRCA_ENT38 (A4WDE8 ), GRCA_ERWT9 (B2VED1 ), GRCA_ESCF3 (B7LUY6 ), GRCA_HAEDU (Q7VMC2 ), GRCA_HAEI8 (Q4QPM7 ), GRCA_HAEIE (A5UBC1 ), GRCA_HAEIG (A5UFJ0 ), GRCA_HAEIN (P44455 ), GRCA_HAEPS (B8F6C4 ), GRCA_HAES1 (Q0I272 ), GRCA_HISS2 (B0UWA8 ), GRCA_KLEP3 (B5XNF9 ), GRCA_KLEP7 (A6TCJ1 ), GRCA_MANSM (Q65VN1 ), GRCA_PASMU (Q9CPH6 ), GRCA_PECAS (Q6D209 ), GRCA_PECCP (C6DC10 ), GRCA_PHOPR (Q6LUP6 ), GRCA_PROMH (B4F057 ), GRCA_PSYIN (A1SUE3 ), GRCA_SALA4 (B5F227 ), GRCA_SALAR (A9MGW0 ), GRCA_SALCH (Q57L55 ), GRCA_SALDC (B5FRD8 ), GRCA_SALEP (B5QTW0 ), GRCA_SALG2 (B5RD61 ), GRCA_SALHS (B4TE27 ), GRCA_SALNS (B4T289 ), GRCA_SALPA (Q5PLH7 ), GRCA_SALPB (A9N0W4 ), GRCA_SALPC (C0PVZ1 ), GRCA_SALPK (B5BAR8 ), GRCA_SALSV (B4TS28 ), GRCA_SALTI (Q8XFE0 ), GRCA_SALTY (Q7CQ05 ), GRCA_SERLI (P18953 ), GRCA_SERP5 (A8GI38 ), GRCA_SHIB3 (B2TYK2 ), GRCA_SHIBS (Q31XQ5 ), GRCA_SHIDS (Q32CU0 ), GRCA_SHIF8 (Q0T1S7 ), GRCA_SHIFL (Q83K21 ), GRCA_SHISS (Q3YYT6 ), GRCA_VIBA3 (B7VJ50 ), GRCA_VIBC3 (A5F5R7 ), GRCA_VIBCB (A7MS83 ), GRCA_VIBCH (Q9KPK6 ), GRCA_VIBCM (C3LQD3 ), GRCA_VIBPA (Q87SC7 ), GRCA_VIBVU (Q8DEP5 ), GRCA_VIBVY (Q7MNR2 ), GRCA_YERE8 (A1JKI9 ), GRCA_YERP3 (A7FFS5 ), GRCA_YERPA (Q1C569 ), GRCA_YERPB (B2KA62 ), GRCA_YERPE (Q8ZD84 ), GRCA_YERPG (A9R3Y7 ), GRCA_YERPN (Q1CKF7 ), GRCA_YERPP (A4TKZ1 ), GRCA_YERPS (Q667T8 ), GRCA_YERPY (B1JRB2 ), GRE1_ECOLI (P32674 ), GRE2_ECOLI (P75793 ), ISLA_BILW3 (E5Y378 ), ISLA_DESAG (Q312S2 ), ISLA_DESDA (B8J0R1 ), ISLA_DESVH (Q727N1 ), NRDD_BPT4 (P07071 ), NRDD_ECOLI (P28903 ), NRDD_HAEIN (P43752 ), NRDD_SALTY (Q9L646 ), PFLB_ECOLI (P09373 ), PFLB_HAEIN (P43753 ), PFLB_STAA3 (Q2FK44 ), PFLB_STAA8 (Q2G1D8 ), PFLB_STAAB (Q2YV53 ), PFLB_STAAC (Q5HJF4 ), PFLB_STAAM (Q99WZ7 ), PFLB_STAAN (Q7A7X6 ), PFLB_STAAR (Q6GK90 ), PFLB_STAAS (Q6GCQ0 ), PFLB_STAAW (Q7A1W9 ), PFLB_STAEQ (Q5HKH9 ), PFLB_STAES (Q8CTX6 ), PFL_CHLRE (P37836 ), PFL_CLOPA (Q46266 ), PFL_LACLA (O32797 ), PFL_LACLM (O32799 ), PFL_STRMU (Q59934 ), TDCE_ECOLI (P42632 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
7 sequences
BSSA_THAAR (O87943 ), HPDL_CLOD6 (Q18CP5 ), HPDL_CLODC (C9XIS5 ), HPDL_CLODI (Q84F16 ), HPDL_CLODR (C9YHW1 ), HPDL_CLOSL (Q38HX4 ), HYPD_CLODI (A0A031WDE4)» more |
UniProtKB/Swiss-Prot False positive sequences |
6 sequences
AROB_THEFY (Q47QY7 ), MAGI3_HUMAN (Q5TCQ9 ), PURA_PICTO (Q6L2M3 ), WHITE_LUCCU (Q05360 ), WRN_CAEEL (Q19546 ), YR034_MIMIV (Q5UPB0 )» more |
PDB [Detailed view] |
16 PDB
1CM5; 1H16; 1H17; 1H18; 1MZO; 2PFL; 3PFL; 5FAU; 5FAV; 5FAW; 5FAY; 5KDP; 5YMR; 6ND3; 6OWR; 6VUE » more |