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Entry: PS00850

General information about the entry

Entry name [info] GLY_RADICAL_1
Accession [info] PS00850
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE;
02-JUN-2021 INFO UPDATE.
PROSITE Doc. [info] PDOC00665

Name and characterization of the entry

Description [info] Glycine radical domain signature.
Pattern [info] 
[STIV]-x-R-[IVT]-[CSA]-G-Y-{GI}-[GACV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2021_03 which contains 565'254 sequence entries.


Total number of hits 128 in 128 different sequences
Number of true positive hits 122 in 122 different sequences
Number of 'unknown' hits 0
Number of false positive hits 6 in 6 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 95.31 %
Recall (true positives / (true positives + false negatives)) 94.57 %

Comments [info]

Taxonomic range [info] Bacteriophages, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] radical at position 6
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 122 sequences 

CUTC_DESAG  (Q30W70    ), GRCA_ACTP2  (A3MZ79    ), GRCA_ACTP7  (B3H0M3    ), 

GRCA_ACTPJ  (B0BTB3    ), GRCA_ACTSZ  (A6VLV5    ), GRCA_ALIF1  (Q5E2Y6    ), 
GRCA_ALIFM  (B5FAJ9    ), GRCA_ALISL  (B6EKY5    ), GRCA_BPT4   (P13316    ), 
GRCA_CITK8  (A8AD08    ), GRCA_CROS8  (A7MH19    ), GRCA_ECO24  (A7ZQ24    ), 
GRCA_ECO27  (B7UH18    ), GRCA_ECO45  (B7MIR4    ), GRCA_ECO55  (B7LDH2    ), 
GRCA_ECO57  (P68067    ), GRCA_ECO5E  (B5Z153    ), GRCA_ECO7I  (B7NRN5    ), 
GRCA_ECO81  (B7MYL2    ), GRCA_ECO8A  (B7M8J4    ), GRCA_ECOBW  (C4ZYK2    ), 
GRCA_ECODH  (B1XBQ6    ), GRCA_ECOHS  (A8A391    ), GRCA_ECOK1  (A1AEA9    ), 
GRCA_ECOL5  (Q0TEQ9    ), GRCA_ECOL6  (Q8FF10    ), GRCA_ECOLC  (B1IVP8    ), 
GRCA_ECOLI  (P68066    ), GRCA_ECOLU  (B7N6H0    ), GRCA_ECOSE  (B6I5F4    ), 
GRCA_ECOSM  (B1LP92    ), GRCA_EDWI9  (C5BAK4    ), GRCA_ENT38  (A4WDE8    ), 
GRCA_ERWT9  (B2VED1    ), GRCA_ESCF3  (B7LUY6    ), GRCA_HAEDU  (Q7VMC2    ), 
GRCA_HAEI8  (Q4QPM7    ), GRCA_HAEIE  (A5UBC1    ), GRCA_HAEIG  (A5UFJ0    ), 
GRCA_HAEIN  (P44455    ), GRCA_HAEPS  (B8F6C4    ), GRCA_HAES1  (Q0I272    ), 
GRCA_HISS2  (B0UWA8    ), GRCA_KLEP3  (B5XNF9    ), GRCA_KLEP7  (A6TCJ1    ), 
GRCA_MANSM  (Q65VN1    ), GRCA_PASMU  (Q9CPH6    ), GRCA_PECAS  (Q6D209    ), 
GRCA_PECCP  (C6DC10    ), GRCA_PHOPR  (Q6LUP6    ), GRCA_PROMH  (B4F057    ), 
GRCA_PSYIN  (A1SUE3    ), GRCA_SALA4  (B5F227    ), GRCA_SALAR  (A9MGW0    ), 
GRCA_SALCH  (Q57L55    ), GRCA_SALDC  (B5FRD8    ), GRCA_SALEP  (B5QTW0    ), 
GRCA_SALG2  (B5RD61    ), GRCA_SALHS  (B4TE27    ), GRCA_SALNS  (B4T289    ), 
GRCA_SALPA  (Q5PLH7    ), GRCA_SALPB  (A9N0W4    ), GRCA_SALPC  (C0PVZ1    ), 
GRCA_SALPK  (B5BAR8    ), GRCA_SALSV  (B4TS28    ), GRCA_SALTI  (Q8XFE0    ), 
GRCA_SALTY  (Q7CQ05    ), GRCA_SERLI  (P18953    ), GRCA_SERP5  (A8GI38    ), 
GRCA_SHIB3  (B2TYK2    ), GRCA_SHIBS  (Q31XQ5    ), GRCA_SHIDS  (Q32CU0    ), 
GRCA_SHIF8  (Q0T1S7    ), GRCA_SHIFL  (Q83K21    ), GRCA_SHISS  (Q3YYT6    ), 
GRCA_VIBA3  (B7VJ50    ), GRCA_VIBC3  (A5F5R7    ), GRCA_VIBCB  (A7MS83    ), 
GRCA_VIBCH  (Q9KPK6    ), GRCA_VIBCM  (C3LQD3    ), GRCA_VIBPA  (Q87SC7    ), 
GRCA_VIBVU  (Q8DEP5    ), GRCA_VIBVY  (Q7MNR2    ), GRCA_YERE8  (A1JKI9    ), 
GRCA_YERP3  (A7FFS5    ), GRCA_YERPA  (Q1C569    ), GRCA_YERPB  (B2KA62    ), 
GRCA_YERPE  (Q8ZD84    ), GRCA_YERPG  (A9R3Y7    ), GRCA_YERPN  (Q1CKF7    ), 
GRCA_YERPP  (A4TKZ1    ), GRCA_YERPS  (Q667T8    ), GRCA_YERPY  (B1JRB2    ), 
GRE1_ECOLI  (P32674    ), GRE2_ECOLI  (P75793    ), ISLA_BILW3  (E5Y378    ), 
ISLA_DESAG  (Q312S2    ), ISLA_DESDA  (B8J0R1    ), ISLA_DESVH  (Q727N1    ), 
NRDD_BPT4   (P07071    ), NRDD_ECOLI  (P28903    ), NRDD_HAEIN  (P43752    ), 
NRDD_SALTY  (Q9L646    ), PFLB_ECOLI  (P09373    ), PFLB_HAEIN  (P43753    ), 
PFLB_STAA3  (Q2FK44    ), PFLB_STAA8  (Q2G1D8    ), PFLB_STAAB  (Q2YV53    ), 
PFLB_STAAC  (Q5HJF4    ), PFLB_STAAM  (Q99WZ7    ), PFLB_STAAN  (Q7A7X6    ), 
PFLB_STAAR  (Q6GK90    ), PFLB_STAAS  (Q6GCQ0    ), PFLB_STAAW  (Q7A1W9    ), 
PFLB_STAEQ  (Q5HKH9    ), PFLB_STAES  (Q8CTX6    ), PFL_CHLRE   (P37836    ), 
PFL_CLOPA   (Q46266    ), PFL_LACLA   (O32797    ), PFL_LACLM   (O32799    ), 
PFL_STRMU   (Q59934    ), TDCE_ECOLI  (P42632    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

BSSA_THAAR  (O87943    ), HPDL_CLOD6  (Q18CP5    ), HPDL_CLODC  (C9XIS5    ), 

HPDL_CLODI  (Q84F16    ), HPDL_CLODR  (C9YHW1    ), HPDL_CLOSL  (Q38HX4    ), 
HYPD_CLODI  (A0A031WDE4)
» more

UniProtKB/Swiss-Prot
False positive sequences		 6 sequences 

AROB_THEFY  (Q47QY7    ), MAGI3_HUMAN (Q5TCQ9    ), PURA_PICTO  (Q6L2M3    ), 

WHITE_LUCCU (Q05360    ), WRN_CAEEL   (Q19546    ), YR034_MIMIV (Q5UPB0    )
» more

PDB
[Detailed view]		 16 PDB

1CM5; 1H16; 1H17; 1H18; 1MZO; 2PFL; 3PFL; 5FAU; 5FAV; 5FAW; 5FAY; 5KDP; 5YMR; 6ND3; 6OWR; 6VUE
» more

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