PROSITE entry PS00857

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General information about the entry

Entry name [info]	PREPHENATE_DEHYDR_1
Accession [info]	PS00857
Entry type [info]	PATTERN
Date [info]	01-OCT-1993 CREATED; 01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00671

Name and characterization of the entry

Description [info]	Prephenate dehydratase signature 1.
Pattern [info]	[FY]-x-[LIVM]-x(2)-[LIVM]-x(5)-[DN]-x(5)-T-R-F-[LIVMW]-x-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	32 in 32 different sequences
Number of true positive hits	31 in 31 different sequences
Number of 'unknown' hits	0
Number of false positive hits	1
Number of false negative sequences	17
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	96.88 %
Recall (true positives / (true positives + false negatives))	64.58 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

31 sequences

AROD1_ARATH (Q9SA96), AROD1_PETHY (D3U715), AROD2_ARATH (Q9SSE7),

AROD2_PETHY (D3U716), AROD3_ARATH (Q9ZUY3), AROD3_PETHY (D3U717), 
AROD4_ARATH (O22241), AROD5_ARATH (Q9FNJ8), AROD6_ARATH (Q9SGD6), 
CMPDT_AQUAE (O67085), CMPDT_BUCAI (P57472), CMPDT_BUCAP (Q8K9F8), 
CMPDT_ECO57 (P0A9J9), CMPDT_ECOLI (P0A9J8), CMPDT_ENTAG (Q02286), 
CMPDT_HAEIN (P43900), CMPDT_NEIG1 (Q9ZHY3), CMPDT_PSEAE (Q9HZ67), 
CMPDT_SHIFL (P0A9K0), CMPDT_STUST (P27603), PHEA_AMYME  (Q44104), 
PHEA_BACSU  (P21203), PHEA_CORGL  (P10341), PHEA_LACLA  (Q9CEU2), 
PHEA_LACLM  (P43909), PHEA_METJA  (Q58054), PHEA_MYCGI  (A4T6G3), 
PHEA_MYCSJ  (A3Q7Q1), PHEA_MYCSK  (A1UNA3), PHEA_MYCSS  (Q1B1U6), 
PHEA_MYCVP  (A1TGX7)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

17 sequences

CMPDT_BUCBP (Q89AE5), GQQA_KOMEU  (A0A0M0ELU2), PHA2_SCHPO  (O14361),

PHA2_YEAST  (P32452), PHEA_MYCA1  (A0Q994), PHEA_MYCA9  (B1MEG8), 
PHEA_MYCBO  (Q7TVJ6), PHEA_MYCBP  (A1KQH3), PHEA_MYCLB  (B8ZTU2), 
PHEA_MYCLE  (Q9CDC4), PHEA_MYCMM  (B2HMM5), PHEA_MYCPA  (Q745J2), 
PHEA_MYCS2  (A0R643), PHEA_MYCTA  (A5U9G7), PHEA_MYCTO  (P9WIC2), 
PHEA_MYCTU  (P9WIC3), PHEA_MYCUA  (A0PX17)

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UniProtKB/Swiss-Prot
False positive sequences

1 sequence

TRPG_DROME  (Q9VJJ7)