We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS00867
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PURL: https://purl.expasy.org/prosite/signature/PS00867
Direct ScanProsite submission
General information about the entry
| Entry name [info] | CPSASE_2 |
| Accession [info] | PS00867 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00676 |
Name and characterization of the entry
| Description [info] | Carbamoyl-phosphate synthase subdomain signature 2. |
| Pattern [info] |
[LIVMF]-[LIMN]-E-[LIVMCA]-N-[PATLIVM]-[KR]-[LIVMSTAC]. |
Numerical results [info]
| Total number of hits | 726 in 486 different sequences |
| Number of true positive hits | 582 in 342 different sequences |
| Number of 'unknown' hits | 3 in 3 different sequences |
| Number of false positive hits | 141 in 141 different sequences |
| Number of false negative sequences | 2 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 80.50 % |
| Recall (true positives / (true positives + false negatives)) | 99.66 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 2 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
342 sequences
2OCS_HYDTT (D3DJ42), ACACA_BOVIN (Q9TTS3), ACACA_HUMAN (Q13085), ACACA_MOUSE (Q5SWU9), ACACA_RAT (P11497), ACACA_SHEEP (Q28559), ACACB_HUMAN (O00763), ACACB_MOUSE (E9Q4Z2), ACAC_CHICK (P11029), ACAC_DICDI (Q54J08), ACAC_SCHPO (P78820), ACAC_YEAST (Q00955), ACC1_ARATH (Q38970), ACC1_ORYSJ (Q8S6N5), ACC2_ARATH (F4I1L3), ACC2_ORYSJ (B9FK36), ACCA1_MYCBO (P0A509), ACCA1_MYCTO (P9WPQ2), ACCA1_MYCTU (P9WPQ3), ACCA3_MYCLE (P46392), ACCA3_MYCTU (P96890), ACCC1_BACSU (P49787), ACCC1_POPTR (B9HBA8), ACCC2_BACSU (O34544), ACCC2_POPTR (B9N843), ACCC_ALLVD (O52058), ACCC_ARATH (O04983), ACCC_ECO57 (Q8X9B6), ACCC_ECOLI (P24182), ACCC_HAEIN (P43873), ACCC_HALH5 (Q9KDS9), ACCC_NOSS1 (Q06862), ACCC_PSEAE (P37798), CARB1_AQUAE (O67869), CARB1_METJA (Q58773), CARB1_METKA (Q8TWX0), CARB2_AQUAE (O67233), CARB2_METJA (Q58776), CARB2_METKA (Q8TUT7), CARB_ACIC5 (C1F1S6), CARB_AGARV (C4ZEK2), CARB_AGRFC (Q8UDE9), CARB_ARATH (Q42601), CARB_ARCFU (O28994), CARB_ARTS2 (A0JX72), CARB_BACAA (C3P656), CARB_BACAC (C3L740), CARB_BACAH (A0RHQ8), CARB_BACAN (Q81WF2), CARB_BACC0 (B7JJX3), CARB_BACC1 (Q732I3), CARB_BACC2 (B7IUP6), CARB_BACC3 (C1EPQ0), CARB_BACC4 (B7H6M2), CARB_BACC7 (B7HLM0), CARB_BACCL (P46537), CARB_BACCN (A7GRL1), CARB_BACCQ (B9IVW3), CARB_BACCR (Q819S3), CARB_BACCZ (Q636E0), CARB_BACHK (Q6HES8), CARB_BACMK (A9VTC6), CARB_BACSU (P25994), CARB_BEUC1 (C5C687), CARB_BIFA0 (B8DTW3), CARB_BIFAA (A1A0T4), CARB_BIFLD (B3DQ32), CARB_BIFLO (Q8G815), CARB_BIFLS (B7GPW2), CARB_BRUME (Q8YIC2), CARB_BRUSU (Q8FZJ3), CARB_BUCAI (P57244), CARB_BUCAP (Q8K9Z7), CARB_BUCBP (P59448), CARB_CALS4 (Q8RBK0), CARB_CAMJE (Q9PIL7), CARB_CAUVC (Q9A4D6), CARB_CLAM3 (A5CRX5), CARB_CLASE (B0REV9), CARB_CLOAB (Q97FT3), CARB_CLOB8 (A6LPD9), CARB_CLOBA (B2UX86), CARB_CLOBB (B2THH3), CARB_CLOBJ (C1FNY3), CARB_CLOBL (A7GE89), CARB_CLOBM (B1KT07), CARB_CLOP1 (Q0TM79), CARB_CLOPE (Q8XHB3), CARB_CLOPS (Q0SPY4), CARB_COREF (Q8FT42), CARB_CORGL (P58939), CARB_CUTAK (Q6A914), CARB_CUTCT (P46056), CARB_DEIDV (C1CXR4), CARB_DEIGD (Q1IWM0), CARB_DEIRA (Q9RWK0), CARB_DESAP (B1I4M8), CARB_ECO57 (P63737), CARB_ECOL6 (Q8FLB0), CARB_ECOLI (P00968), CARB_ENTFA (Q834E2), CARB_EREGS (Q75D66), CARB_EXIS2 (B1YIR9), CARB_EXISA (C4L5W3), CARB_FUSNN (Q8RG86), CARB_GEMAT (C1A4I5), CARB_GEOSE (O50302), CARB_HAEDU (Q7VP67), CARB_HALER (Q8RSS3), CARB_HALH5 (Q9K9V9), CARB_HALOH (B8D1H3), CARB_HALSA (Q9HP43), CARB_HELPJ (Q9ZKT2), CARB_HELPY (O25577), CARB_KINRD (A6WCC6), CARB_KOCRD (B2GI87), CARB_KORVE (Q1IPK2), CARB_LACAC (Q5FJC0), CARB_LACCB (B3WEF5), CARB_LACDB (Q047M8), CARB_LACH4 (A8YVZ3), CARB_LACJO (Q74J34), CARB_LACLA (Q9CFV2), CARB_LACLM (O32771), CARB_LACLS (Q02YG5), CARB_LACP3 (Q038Z2), CARB_LACP7 (A9KI94), CARB_LACPL (P77886), CARB_LATSS (Q38X24), CARB_LEPIC (Q72NF1), CARB_LEPIN (Q8F832), CARB_LEUCK (B1MZ74), CARB_LEUMM (Q03WW7), CARB_LIGS1 (Q1WVA9), CARB_LIMF3 (B2GD06), CARB_LIMRD (A5VHN6), CARB_LIMRJ (B2G564), CARB_LISIN (Q92AH3), CARB_LISMC (C1KWD4), CARB_LISMF (Q71YI1), CARB_LISMH (B8DDR7), CARB_LISMO (Q8Y665), CARB_LISW6 (A0AJU0), CARB_LYSSC (B1HQC1), CARB_MACCJ (B9EB69), CARB_METAC (Q8TNY4), CARB_METB6 (A7I6J1), CARB_METBA (P13258), CARB_METBF (Q469Z7), CARB_METHJ (Q2FLD9), CARB_METLZ (A2SQ53), CARB_METMA (P58944), CARB_METMJ (A3CU73), CARB_METPE (B8GEA3), CARB_METS3 (A5UKG5), CARB_METTH (O27077), CARB_METTP (A0B8K9), CARB_MICLC (C5CCF1), CARB_MYCBO (Q7U054), CARB_MYCGI (A4TBY6), CARB_MYCLE (Q9CCR2), CARB_MYCSJ (A3PZ65), CARB_MYCSK (A1UFK4), CARB_MYCSS (Q1B9F9), CARB_MYCTO (P9WPK2), CARB_MYCTU (P9WPK3), CARB_MYCVP (A1T8H1), CARB_MYXXD (Q1D6Y8), CARB_NATTJ (B2A170), CARB_NEIGO (Q59599), CARB_NEIMA (Q9JW02), CARB_NEIMB (Q9JXW8), CARB_NEUCR (Q7SH52), CARB_NOSS1 (Q8YQL2), CARB_OENOB (Q04H29), CARB_ORYSJ (B9EXM2), CARB_PAEAT (A1R6Z3), CARB_PASMU (Q9CKV0), CARB_PEDPA (Q03HB0), CARB_PELTS (A5D508), CARB_PSEAE (P38100), CARB_PSECP (B8H8U5), CARB_PSELT (A8F453), CARB_PSEPK (Q88DU6), CARB_PSESM (Q87WP4), CARB_PYRAE (Q8ZY48), CARB_PYRFU (Q8U085), CARB_RALN1 (Q8XZ83), CARB_RENSM (A9WSA8), CARB_RHILO (Q98I87), CARB_RHIME (Q92PZ4), CARB_RHOBA (Q7UJ58), CARB_RUBXD (Q1AVY9), CARB_SACI1 (C3NH23), CARB_SACI2 (C3MQE3), CARB_SACI3 (C3N664), CARB_SACI4 (C3MW21), CARB_SACI6 (C4KHM7), CARB_SACI7 (C3NEM0), CARB_SACS2 (Q59969), CARB_SALTI (Q8Z9L7), CARB_SALTY (P14846), CARB_SCHPO (O94313), CARB_SHIFL (P63738), CARB_STAA1 (A7X1F4), CARB_STAA2 (A6U122), CARB_STAA3 (Q2FHN5), CARB_STAA8 (Q2FZ72), CARB_STAA9 (A5IS88), CARB_STAAB (Q2YXG5), CARB_STAAC (Q5HGM9), CARB_STAAE (A6QGA4), CARB_STAAM (P63739), CARB_STAAN (P63740), CARB_STAAR (Q6GHN2), CARB_STAAS (Q6GA10), CARB_STAAT (A8Z3P0), CARB_STAAW (P58940), CARB_STACT (B9DPN2), CARB_STAEQ (Q5HPY8), CARB_STAES (Q8CPJ4), CARB_STAHJ (Q4L5Q5), CARB_STAS1 (Q49WY4), CARB_STRA1 (Q3K150), CARB_STRA3 (Q8E5F5), CARB_STRA5 (Q8DZQ7), CARB_STRAW (Q827Q7), CARB_STRCO (Q9KXR6), CARB_STRE4 (C0M756), CARB_STRGC (A8AX83), CARB_STRGG (B1W463), CARB_STRMU (Q8DUP3), CARB_STRP1 (Q9A0C6), CARB_STRP2 (Q04K48), CARB_STRP3 (P0DA14), CARB_STRP4 (B5E512), CARB_STRP6 (Q5XCR6), CARB_STRP7 (C1C7Q3), CARB_STRP8 (P58941), CARB_STRPG (A2RF60), CARB_STRPI (B1IC65), CARB_STRPJ (B8ZJT9), CARB_STRPN (Q97QE4), CARB_STRPQ (P0DA15), CARB_STRPS (B2IQ67), CARB_STRPZ (B5XKW2), CARB_STRR6 (Q8CWR0), CARB_STRS7 (C0MEH1), CARB_STRSV (A3CNI5), CARB_STRT1 (Q5M0W9), CARB_STRT2 (Q5M5F6), CARB_STRTD (Q03LT8), CARB_STRU0 (B9DRV7), CARB_STRZJ (C1CEM9), CARB_STRZP (C1CL09), CARB_STRZT (C1CR31), CARB_SULAC (Q4J8E8), CARB_SULTO (Q970U7), CARB_SYMTH (Q67Q54), CARB_SYNY3 (Q55756), CARB_THEAC (Q9HK17), CARB_THEMA (Q9WZ27), CARB_THENN (B9KB91), CARB_THEP1 (A5IJL8), CARB_THEP3 (B0KBW4), CARB_THEPX (B0K4D7), CARB_THERP (B9KXM5), CARB_THESQ (B1L8T8), CARB_THET2 (P96495), CARB_THET8 (Q5SKN1), CARB_THEVO (Q97AJ3), CARB_VIBCH (Q9KPH9), CARB_VIBPA (Q87SF3), CARB_VIBVU (Q8DEM2), CARB_VIBVY (Q7MNU0), CARB_XANAC (P58942), CARB_XANCP (P58943), CARB_XYLFA (Q9PEC1), CARB_XYLFT (Q87EB8), CARB_YEAST (P03965), CARB_YERPE (Q8ZIL4), CARB_ZYMMO (O50236), CARY_BACSU (P18185), CARY_GEOSE (Q9ZB63), CARY_HALH5 (Q9K8V7), CARY_LACPL (Q9RLS9), CPSM_AQUCT (Q91293), CPSM_HUMAN (P31327), CPSM_MOUSE (Q8C196), CPSM_RAT(P07756), DMXL1_CRYX8 (A0A4P8DJE6), DUR1_LACKL (A5H0J2), DUR1_YEAST (P32528), EFNMT_DROME (Q9VIK9), HFA1_YEAS1 (B3LM95), HFA1_YEAS2 (C7GRE4), HFA1_YEAS7 (A6ZMR9), HFA1_YEAS8 (C8ZF72), HFA1_YEAST (P32874), LAMA_EMENI (P38095), MCCA_ARATH (Q42523), MCCA_DICDI (Q54KE6), MCCA_HUMAN (Q96RQ3), MCCA_MOUSE (Q99MR8), MCCA_ORYSJ (Q2QMG2), MCCA_RAT(Q5I0C3), MCCA_SOYBN (Q42777), MFND_METFA (C7P8V7), PCCA_CAEBR (Q612F5), PCCA_CAEEL (Q19842), PCCA_HALMT (I3R7G3), PCCA_HUMAN (P05165), PCCA_MOUSE (Q91ZA3), PCCA_PIG(P0DTA4), PCCA_RAT(P14882), PCCA_RUEPO (Q5LUF3), PYC1_CAEEL (O17732), PYC1_YEAST (P11154), PYC2_YEAST (P32327), PYCA_METJA (Q58626), PYCA_METTH (O27939), PYC_ASPNG (Q9HES8), PYC_ASPTE (O93918), PYC_ASPTN (Q0CLK1), PYC_BACSU (Q9KWU4), PYC_PICAN (Q8X1T3), PYC_PICPA (P78992), PYC_SCHPO (Q9UUE1), PYC_STAAM (A0A0H3JRU9), PYR1_CAEEL (Q18990), PYR1_DICDI (P20054), PYR1_DROME (P05990), PYR1_EMENI (O93937), PYR1_HUMAN (P27708), PYR1_MESAU (P08955), PYR1_MOUSE (B2RQC6), PYR1_NEUCR (Q7S8A6), PYR1_SCHPO (Q09794), PYR1_SQUAC (Q91437), PYR1_YEAST (P07259), XRCC4_ARATH (Q682V0), Y4RH_SINFN (P55641)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
2 sequences
CARB_HYPBU (A2BJL3), PYCA_ARCFU (O30019) |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
ACCC_POPEU (P84546) |
| UniProtKB/Swiss-Prot 'Unknown' sequences |
3 sequences
ARLY2_RHILO (Q981V0), R1AB_SARS2 (P0DTD1), R1A_SARS2 (P0DTC1) |
| UniProtKB/Swiss-Prot False positive sequences |
141 sequences
AATE_METLZ (A2SST2), ABAA_ASPOR (C0STD9), ACH1_CANAL (P83773), ACH1_YARLI (Q6C3Z9), AKAP9_HUMAN (Q99996), AKAP9_MOUSE (Q70FJ1), AL121_ARATH (Q8VZC3), ALDH_LINUS (Q40255), AP2B_YEAST (P27351), ARGB_PELUB (Q4FNF2), ARMX5_HUMAN (Q6P1M9), ARMX5_PONAB (Q5RDG2), ATC1_DICDI (P54678), ATG12_PICAN (A7KAJ7), BTRJ_NIACI (Q4H4E7), CAP6_ARATH (Q8VYT2), CENPC_YEAST (P35201), CH60_PHATC (A0T0H6), CMOB_NAUPA (B9L8G5), COBT_METC4 (Q9X7F4), CRNS1_CHICK (D3KCC4), CRNS1_HUMAN (A5YM72), CRNS1_MOUSE (Q6ZPS2), CTRO_HUMAN (O14578), CTRO_MOUSE (P49025), CTRO_RAT(E9PSL7), CTXL_ACRMI (B7W114), CUTI_DIDRA (P29292), CYSH_VIBVU (Q8CWK6), CYSH_VIBVY (Q7MHA7), DAPB_BDEBA (Q6MRM8), DMD_SACS2 (Q97UL5), DPO3_STRA3 (P63983), DPO3_STRA5 (P63984), DYH9_HUMAN (Q9NYC9), EABN2_BACSU (P42293), F16PC_LACCB (B3W9A8), F16PC_LACP3 (Q036S2), F200A_MACFA (Q4R6P1), FUJ1_GIBF5 (S0EET5), GCSH3_ARATH (Q9LQL0), GGLO_BOVIN (Q3ZC33), GLB1_MAIZE (P15590), GLB63_ORYSJ (Q75GX9), GLS24_STRP1 (Q99ZE5), GLS24_STRP3 (P0CZ86), GLS24_STRP6 (Q5XBW6), GLS24_STRP8 (Q7CN70), GLS24_STRPM (Q48TA2), GLS24_STRPQ (P0CZ87), GLYA_PICTO (Q6L1F6), GPI7_YARLI (Q6C7Q6), GUAD_DICDI (Q86AW9), GUNG_ACET2 (Q05332), HLDE_SERP5 (A8GJU3), HMW2_MYCGA (Q7NBF8), HRDA_STRCO (P18182), INVSB_XENLA (Q71S21), IORB_METTM (P80911), KAD_MESFL (Q6F1X3), KIN17_DICDI (Q55D16), LAA1_YEAST (P39526), MDH1_AQUAE (O67655), MDH_MYXXA (Q6ZZC6), MDH_PYRAE (Q8ZVB2), MDH_PYRIL (A1RS58), MDH_SYNC1 (Q3A5S0), MDH_THET7 (A0A0S3QTC6), MED10_CANAL (Q5A3K2), MFND_METJA (Q58225), MINE_VIBCH (Q9KQN7), MINE_VIBPA (Q87RC5), MINE_VIBVU (Q8DFS2), MINE_VIBVY (Q7MML2), MMS36_MAGGM (Q6NE78), MSMJL_METJA (Q58543), MTAD_HALWD (Q18EV7), NEUBH_CAMJE (Q0P8T1), NU3M_WICCA (P48913), OBG_GLAP5 (B8F871), OPDA_PENO1 (S7Z800), PARP2_HUMAN (Q9UGN5), PARP2_MOUSE (O88554), PEPT_ALIF1 (Q5E0X3), PHM1_PYRSX (A0A2Z5XAL7), PRLS_FUNXX (A0A089FSA4), PRP5_PYRO7 (A4RN46), PSTB_BORAP (Q0SNU4), PSTB_BORGP (Q662E6), PSUG_GEMAT (C1AA54), PURCE_DICDI (Q54QE4), RECR_RHOP5 (Q07H54), RLMF_FLAJ1 (A5FHX5), RPOC_NITMU (Q2YB04), RPOD_COXBU (Q83BB6), RPOD_RICBR (Q1RKH7), RPOD_RICCN (Q92FZ8), RPOD_RICFE (Q4UJT1), RPOD_RICPR (P33451), RPOD_RICTY (Q68VQ5), RPOS_COXBU (Q9KI19), RPSB_CORDI (P33118), SEC39_YEAST (Q12745), SGO1_SCHPO (Q9P7A0), SIGA2_SYNE7 (Q31ME3), SIGA3_SYNE7 (Q31QG5), SIGA_MYCBO (P0A603), SIGA_MYCTO (P9WGI0), SIGA_MYCTU (P9WGI1), SIGA_STRCO (P18183), SIGA_STRGG (B1VXR4), SIGA_STRGR (P77951), SIGA_THEAQ (Q9EZJ8), SIGA_THET2 (Q72L95), SIGB_MYCTO (P9WGI4), SIGB_MYCTU (P9WGI5), SUZ2_DROME (P25172), SYI_ANAMM (Q5PAL9), SYV_BUCAI (P57447), TMN3_ARATH (Q9ZPS7), TORD_COLP3 (Q484F1), TSAE_RICBR (Q1RGZ7), TSAE_RICPR (Q9ZED0), TSAE_RICTY (Q68XZ1), TTC12_HUMAN (Q9H892), TTC12_MACFA (Q95LY5), UBP28_HUMAN (Q96RU2), UBP28_MOUSE (Q5I043), UBP28_RAT (D3ZJ96), VIT3_DROME (P06607), XB35_ORYSJ (Q7EZ44), Y2393_NOSS1 (P46079), Y449_MYCGE (P47687), Y874_METJA (Q58284), Y952_ARCFU (O29310), YECD_ECO57 (P0ADI8), YECD_ECOLI (P0ADI7), YGIN_ECO57 (P0ADU3), YGIN_ECOLI (P0ADU2), YGIN_SHIFL (P0ADU4), YPF15_PLAF7 (Q8IBB8)» more |
| PDB [Detailed view] |
102 PDB
pdb_00001a9x; pdb_00001bnc; pdb_00001bxr; pdb_00001c30; pdb_00001c3o; pdb_00001ce8; pdb_00001cs0; pdb_00001dv1; pdb_00001jdb; pdb_00001kee; pdb_00001m6v; pdb_00001t36; pdb_00001w93; pdb_00001w96; pdb_00002c00; pdb_00002gps; pdb_00002gpw; pdb_00002hjw; pdb_00002j9g; pdb_00002v58; pdb_00002v59; pdb_00002v5a; pdb_00002vqd; pdb_00002vr1; pdb_00002w6m; pdb_00002w6n; pdb_00002w6o; pdb_00002w6p; pdb_00002w6q; pdb_00002w6z; pdb_00002w70; pdb_00002w71; pdb_00002yl2; pdb_00003bg5; pdb_00003g8c; pdb_00003g8d; pdb_00003gid; pdb_00003glk; pdb_00003hb9; pdb_00003hbl; pdb_00003ho8; pdb_00003jrw; pdb_00003jrx; pdb_00003jzf; pdb_00003jzi; pdb_00003n6r; pdb_00003rup; pdb_00003rv3; pdb_00003rv4; pdb_00004hnt; pdb_00004hnu; pdb_00004hnv; pdb_00004hq6; pdb_00004hr7; pdb_00004mv1; pdb_00004mv3; pdb_00004mv4; pdb_00004mv6; pdb_00004mv7; pdb_00004mv8; pdb_00004mv9; pdb_00004rzq; pdb_00005csk; pdb_00005csl; pdb_00005dot; pdb_00005dou; pdb_00005kkn; pdb_00005mlk; pdb_00006g2d; pdb_00006g2h; pdb_00006g2i; pdb_00006oi8; pdb_00006oi9; pdb_00006ojh; pdb_00006uel; pdb_00006w2j; pdb_00007kbl; pdb_00007kc7; pdb_00007kct; pdb_00007t9w; pdb_00007ybu; pdb_00008j4z; pdb_00008j78; pdb_00008j7d; pdb_00008j99; pdb_00008jak; pdb_00008jaw; pdb_00008jxl; pdb_00008jxm; pdb_00008jxn; pdb_00008k2v; pdb_00008uz2; pdb_00008xkz; pdb_00008xl0; pdb_00008xl1; pdb_00008xl2; pdb_00008xl3; pdb_00008xl4; pdb_00008xl5; pdb_00008xl6; pdb_00008xl7; pdb_00008xl8 » more |