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PROSITE entry PS00871


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General information about the entry

Entry name [info] CLPAB_2
Accession [info] PS00871
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE;
08-NOV-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00679

Name and characterization of the entry

Description [info] Chaperonins clpA/B signature 2.
Pattern [info] 
[RGT]-[LIVMFY]-[DN]-x-[ST]-E-[LIVMFY]-x-[ED]-[KRQEAS]-x-[STA]-x-[STAD]-
[KRS]-[LIVM]-x-G-[STAP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_05 which contains 570'420 sequence entries.


Total number of hits 192 in 192 different sequences
Number of true positive hits 191 in 191 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 99.48 %
Recall (true positives / (true positives + false negatives)) 93.63 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 191 sequences 

CLPAA_SOLLC (P31541), CLPAB_SOLLC (P31542), CLPA_BRANA  (P46523), 

CLPA_ECO57  (P0ABI1), CLPA_ECOL6  (P0ABI0), CLPA_ECOLI  (P0ABH9), 
CLPA_FUSBL  (P05444), CLPB1_ARATH (P42730), CLPB1_CHLTE (Q8KG79), 
CLPB1_NOSS1 (Q8YUL9), CLPB1_ORYSJ (Q6F2Y7), CLPB1_PARMW (Q7U637), 
CLPB1_STRAW (Q82EU9), CLPB1_SYNE7 (P53533), CLPB1_SYNY3 (P74459), 
CLPB1_THEVB (Q8DJ40), CLPB2_NOSS1 (Q8YM56), CLPB2_ORYSJ (Q75GT3), 
CLPB2_PARMW (Q7U3T3), CLPB2_STRAW (Q826F2), CLPB2_SYNE7 (O34209), 
CLPB2_SYNY3 (P74361), CLPB2_THEVB (Q8DG71), CLPB3_ARATH (Q9LF37), 
CLPB4_ARATH (Q8VYJ7), CLPB_AGRFC  (Q7CU92), CLPB_AQUAE  (O67588), 
CLPB_BACAN  (Q81TT4), CLPB_BACC1  (Q73BY1), CLPB_BACCR  (Q81GM5), 
CLPB_BACTN  (Q89YY3), CLPB_BDEBA  (Q6MIV0), CLPB_BIFLO  (Q8G4X4), 
CLPB_BLOFL  (Q7VQF3), CLPB_BORBR  (Q7WHB6), CLPB_BORPA  (Q7W9E6), 
CLPB_BORPE  (Q7VYV6), CLPB_BRADU  (Q89UL2), CLPB_BRUME  (Q8YJ91), 
CLPB_BRUSU  (Q7CEG6), CLPB_CAMJE  (Q9PI02), CLPB_CAUVC  (Q9A9T4), 
CLPB_CHLCV  (Q822Q4), CLPB_CHLMU  (Q9PKS5), CLPB_CHLPN  (Q7AJA9), 
CLPB_CHLTR  (O84115), CLPB_CHRVO  (Q7NWN7), CLPB_CLOAB  (Q97KG0), 
CLPB_CLOPE  (Q8XKG8), CLPB_CLOTE  (Q898C7), CLPB_CORDI  (Q6NF05), 
CLPB_COREF  (Q8FM94), CLPB_CORGL  (P53532), CLPB_COXBU  (Q83F55), 
CLPB_DEIRA  (Q9RVI3), CLPB_DESVH  (Q72AW6), CLPB_DICNO  (P17422), 
CLPB_ECO57  (P63285), CLPB_ECOL6  (P63286), CLPB_ECOLI  (P63284), 
CLPB_ENTFA  (Q831Y7), CLPB_FUSNN  (Q8RHQ8), CLPB_GEOSL  (Q74FF1), 
CLPB_GLOVI  (Q7NFE9), CLPB_HAEDU  (Q7VNH1), CLPB_HAEIN  (P44403), 
CLPB_HELHP  (Q7VJY3), CLPB_HELPJ  (Q9ZMH1), CLPB_HELPY  (P71404), 
CLPB_LACLA  (Q9CFF3), CLPB_LACLM  (O68185), CLPB_LACPL  (Q88VX7), 
CLPB_LEPBY  (O87444), CLPB_LEPIC  (Q72QU2), CLPB_LEPIN  (Q8F509), 
CLPB_LISIN  (Q929G7), CLPB_LISM4  (G2K265), CLPB_LISMF  (Q71XF9), 
CLPB_LISMO  (Q8Y570), CLPB_MALP2  (Q8EW28), CLPB_MEIRU  (Q7X2S8), 
CLPB_MYCBO  (P63287), CLPB_MYCGA  (Q7NAZ3), CLPB_MYCGE  (P47597), 
CLPB_MYCLE  (Q9CB26), CLPB_MYCPA  (Q73T66), CLPB_MYCPN  (P75247), 
CLPB_MYCTO  (P9WPD0), CLPB_MYCTU  (P9WPD1), CLPB_NEIMA  (Q9JTP9), 
CLPB_NEIMB  (Q9JYQ8), CLPB_NITEU  (Q82SD8), CLPB_OCEIH  (Q8EU05), 
CLPB_PARUW  (Q6MD97), CLPB_PASMU  (Q9CKC0), CLPB_PHOLL  (Q7N788), 
CLPB_PHOPR  (Q6LMY0), CLPB_PORGI  (Q7MVE7), CLPB_PROFC  (Q7WSY8), 
CLPB_PROMA  (Q7VBL0), CLPB_PROMM  (Q7V8B1), CLPB_PROMP  (Q7V2A3), 
CLPB_PSEAE  (Q9HVN5), CLPB_PSEPK  (Q88Q71), CLPB_PSESM  (Q889C2), 
CLPB_RALN1  (Q8XZR0), CLPB_RHILO  (Q98G96), CLPB_RHIME  (Q92MK7), 
CLPB_RHOBA  (Q7UM33), CLPB_RHOPA  (Q6N1H2), CLPB_RICBR  (Q1RGR1), 
CLPB_RICCN  (Q92JK8), CLPB_RICFE  (Q4UN57), CLPB_RICPR  (Q9ZEA9), 
CLPB_RICTY  (Q68XR2), CLPB_SALTI  (Q7AMH5), CLPB_SALTY  (Q7CQ01), 
CLPB_SHEON  (Q8EBE6), CLPB_SHIFL  (Q7UBW5), CLPB_STAAC  (Q5HHB0), 
CLPB_STAAM  (Q99VB5), CLPB_STAAN  (Q7A6G6), CLPB_STAAR  (Q6GIB2), 
CLPB_STAAS  (Q6GAV1), CLPB_STAAW  (Q8NXE7), CLPB_STAEQ  (Q5HQI5), 
CLPB_STAES  (Q8CPT5), CLPB_STRAL  (Q9Z6E4), CLPB_STRCO  (Q8CJV9), 
CLPB_STRMU  (Q8DTC7), CLPB_THET2  (Q72IK9), CLPB_THET8  (Q9RA63), 
CLPB_TREDE  (Q73K92), CLPB_TREPA  (O83110), CLPB_TROW8  (Q83N78), 
CLPB_TROWT  (Q83FI1), CLPB_VIBCH  (Q9KU18), CLPB_VIBPA  (Q87S63), 
CLPB_VIBVU  (Q8DEV2), CLPB_VIBVY  (Q7MNK1), CLPB_WOLPM  (Q73IE4), 
CLPB_WOLSU  (Q7M9X4), CLPB_XANAC  (Q8PHQ4), CLPB_XANCP  (Q8P6A0), 
CLPB_XYLFA  (Q9PGC1), CLPB_XYLFT  (Q87AX8), CLPB_YEREN  (Q9F746), 
CLPB_YERPE  (Q74X11), CLPC1_ARATH (Q9FI56), CLPC1_ORYSJ (Q7F9I1), 
CLPC2_ARATH (Q9SXJ7), CLPC2_ORYSJ (Q2QVG9), CLPC3_ORYSJ (Q53LY0), 
CLPC4_ORYSJ (Q53N47), CLPC_BACSU  (P37571), CLPC_CYACA  (Q9TM05), 
CLPC_GUITH  (O78410), CLPC_NEOYE  (Q1XDF4), CLPC_PEA(P35100), 
CLPC_PORPU  (P51332), CLPC_STAA3  (Q2FJB5), CLPC_STAA8  (Q2G0P5), 
CLPC_STAAB  (Q2YSD6), CLPC_STAAC  (P0C281), CLPC_STAAM  (Q99W78), 
CLPC_STAAN  (Q7A797), CLPC_STAAR  (Q6GJE4), CLPC_STAAS  (Q6GBW3), 
CLPC_STAAW  (Q8NXY8), CLPC_STAEQ  (Q5HRM8), CLPC_STAES  (Q8CQ88), 
CLPC_STAHJ  (Q4L3I4), CLPC_STAS1  (Q49V34), CLPC_STRP6  (Q5XCL7), 
CLPC_TRICV  (P49574), CLPD1_ORYSJ (Q6H795), CLPD2_ORYSJ (Q7XL03), 
CLPD_ARATH  (P42762), CLPE_BACSU  (O31673), CLPE_LACLA  (Q9CI09), 
CLPE_LACLM  (Q9S5Z2), CLPE_STRPN  (P35594), CLPL_LACLL  (Q06716), 
CLP_TRYBB   (P31543), HLYB_BRAHO  (Q54316), HS104_SCHPO (O94641), 
HS104_YEAST (P31539), HSP78_CANAL (Q96UX5), HSP78_SCHPO (O74402), 
HSP78_YEAST (P33416), HSP98_NEUCR (P31540)
» more

UniProtKB/Swiss-Prot
False negative sequences		 13 sequences 

ADPR_RHOER  (Q01357), CLPB2_ARATH (F4JVJ1), CLPB2_CHLTE (Q8KA87), 

CLPL_STAA3  (Q2FDV8), CLPL_STAA8  (Q2FV74), CLPL_STAAB  (Q2YWB1), 
CLPL_STAAC  (Q5HD02), CLPL_STAAM  (Q99R88), CLPL_STAAN  (Q7A3F4), 
CLPL_STAAR  (Q6GDQ0), CLPL_STAAS  (Q6G6C6), CLPL_STAAW  (Q8NUR7), 
CLPV1_PSEAE (Q9I742)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 4 sequences 

CLPA_PINPS  (P81671), CLPA_POPEU  (P84565), CLPB_ACICA  (P82956), 

CLP_TRYCR   (O15885)
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

CLPB3_ORYSJ (Q0E3C8)


				
	

	

		PDB
[Detailed view]		
		
			59 PDB
			


			1KSF; 1QVR; 1R6B; 3J3R; 3J3S; 3J3T; 3J3U; 4CIU; 4D2Q; 4D2U; 4D2X; 4FCT; 
			
				4FCV; 4FCW; 4FD2; 4LJ4; 4LJ5; 4LJ6; 4LJ7; 5KNE; 5OFO; 5OG1; 5VJH; 5VY8; 
				5VY9; 5VYA; 6AHF; 6DJU; 6DJV; 6ED3; 6EM8; 6EM9; 6EMW; 6N8T; 6N8V; 6N8Z; 
				6OAX; 6OAY; 6OG1; 6OG2; 6OG3; 6QS6; 6QS7; 6QS8; 6UQE; 6UQO; 6W1Z; 6W20; 
				6W21; 6W22; 6W23; 6W24; 6W6E; 6W6G; 6W6H; 6W6I; 6W6J; 7ABR; 7L6N
			
			

			» more