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PROSITE entry PS00878


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General information about the entry

Entry name [info] ODR_DC_2_1
Accession [info] PS00878
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-NOV-1997 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
Pattern [info] 
[FY]-[PA]-x-K-[SACV]-[NHCLFW]-x(4)-[LIVMF]-[LIVMTA]-x(2)-[LIVMA]-x(3)-
[GTE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.


Total number of hits 153 in 153 different sequences
Number of true positive hits 130 in 130 different sequences
Number of 'unknown' hits 0
Number of false positive hits 23 in 23 different sequences
Number of false negative sequences 61
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 84.97 %
Recall (true positives / (true positives + false negatives)) 68.06 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 130 sequences 

ADC1A_TOBAC (A0A1S3YCW2), ADC1B_TOBAC (A0A1S3WYR7), ADC2_ORYSJ  (Q7XRA1), 

AZIN2_HUMAN (Q96A70), AZIN2_XENLA (Q9I8S4), DCDA1_ARATH (Q949X7), 
DCDA2_ARATH (Q94A94), DCDA_AQUAE  (O67262), DCDA_ARCFU  (O29458), 
DCDA_BACMT  (P41023), DCDA_BACSU  (P23630), DCDA_BACTN  (Q8A800), 
DCDA_COREF  (Q8RQM6), DCDA_CORGL  (P09890), DCDA_ECOLI  (P00861), 
DCDA_ECOLW  (E0IWI3), DCDA_FRATH  (Q2A5D5), DCDA_HAEIN  (P44316), 
DCDA_HELPJ  (Q9ZME5), DCDA_HELPX  (B4XMC6), DCDA_HELPY  (P56129), 
DCDA_METJA  (Q58497), DCDA_METTH  (O27390), DCDA_MYCBO  (P0A5M5), 
DCDA_MYCLE  (Q50140), DCDA_MYCS2  (Q9X5M1), DCDA_MYCTO  (P9WIU6), 
DCDA_MYCTU  (P9WIU7), DCDA_ORYSJ  (Q6ZG77), DCDA_PSEAE  (P19572), 
DCDA_PSEFL  (O05321), DCDA_STRCO  (Q9ZBH5), DCDA_SYNY3  (Q55484), 
DCDA_THEMA  (Q9X1K5), DCDA_VIBCH  (Q9KVL7), DCLO_SELRU  (O50657), 
DCOR1_DROME (P40807), DCOR1_XENLA (P27120), DCOR2_DROME (P40808), 
DCOR_BOVIN  (P27117), DCOR_CAEEL  (P41931), DCOR_CANAL  (P78599), 
DCOR_CAPAN  (Q8S3N2), DCOR_CHICK  (P27118), DCOR_CRIGR  (P14019), 
DCOR_DATST  (P50134), DCOR_DICDI  (Q54UF3), DCOR_HUMAN  (P11926), 
DCOR_LEIDO  (P27116), DCOR_MOUSE  (P00860), DCOR_MUSPA  (P27119), 
DCOR_NEUCR  (P27121), DCOR_PANRE  (P49725), DCOR_RAT(P09057), 
DCOR_SCHPO  (Q9UQW9), DCOR_SOLLC  (O22616), DCOR_TRYBB  (P07805), 
DCOR_YEAST  (P08432), ODC1A_TOBAC (A0A1S4AUX8), ODC1B_TOBAC (P93351), 
ODC_NICGL   (E0WN94), ODC_NICGU   (Q9FPK5), SPE1_ARATH  (Q9SI64), 
SPE1_AVESA  (P22220), SPE1_BRAJU  (O82475), SPE1_DIACA  (Q96412), 
SPE1_ORYSJ  (Q9SNN0), SPE1_PEA(Q43075), SPE1_SOLLC  (P49726), 
SPE1_SOYBN  (Q39827), SPE2_ARATH  (O23141), SPE2_THECC  (O81160), 
SPEA1_SYNY3 (P74576), SPEA2_SYNY3 (P72587), SPEA_ALKEH  (Q0ACK8), 
SPEA_BACFN  (Q5LIQ3), SPEA_BACFR  (Q64ZT8), SPEA_BACTN  (Q8A2B1), 
SPEA_CITBB  (B5EIW4), SPEA_DEIRA  (Q9RXR4), SPEA_ECO57  (Q8XCX9), 
SPEA_ECO5E  (B5YQD6), SPEA_ECOL6  (Q8FE34), SPEA_ECOLI  (P21170), 
SPEA_ECOSM  (B1LDE8), SPEA_GEODF  (B9M6H6), SPEA_GEOMG  (Q39X78), 
SPEA_GEOSL  (A0A4W3), SPEA_GEOSM  (C6E3V4), SPEA_GEOUR  (A5GB52), 
SPEA_GLOVI  (Q7NE10), SPEA_HAMD5  (C4K6F4), SPEA_KLEP3  (B5XUB1), 
SPEA_MARN8  (A1TY02), SPEA_NEIMA  (Q9JT25), SPEA_NEIMB  (Q9K0U3), 
SPEA_NOSS1  (Q8YRP3), SPEA_PARMW  (Q7U3S0), SPEA_PASMU  (Q9CL60), 
SPEA_PELPD  (A1AS90), SPEA_PHOLL  (Q7N121), SPEA_PHOV8  (A6L012), 
SPEA_PROM0  (A3PA96), SPEA_PROM2  (A8G243), SPEA_PROM3  (A2CDK1), 
SPEA_PROM5  (A2BU00), SPEA_PROM9  (Q31DD8), SPEA_PROMA  (Q7VEG4), 
SPEA_PROMH  (B4F1A4), SPEA_PROMM  (Q7TUJ9), SPEA_PROMP  (Q7V3M9), 
SPEA_PROMS  (A2BNH3), SPEA_PSEAE  (Q9HUX1), SPEA_RHOBA  (Q7UTS2), 
SPEA_SALA4  (B5F5L1), SPEA_SALCH  (Q57K30), SPEA_SALDC  (B5FUJ7), 
SPEA_SALHS  (B4THH1), SPEA_SALNS  (B4T5J3), SPEA_SALPB  (A9N4N1), 
SPEA_SALSV  (B4TV55), SPEA_SALTI  (P60658), SPEA_SALTY  (P60659), 
SPEA_SHIF8  (Q0T0V3), SPEA_SHIFL  (Q83Q93), SPEA_SYNR3  (A5GWM2), 
SPEA_THEVB  (Q8DHY6), SPEA_TRIL1  (B3EAF3), SPEA_YERPE  (Q8ZHG8), 
TABA_PSEAJ  (P31851)
» more

UniProtKB/Swiss-Prot
False negative sequences		 61 sequences 

AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), 

AZIN1_RAT   (Q63764), AZIN2_MOUSE (Q8BVM4), BTRK_NIACI  (Q2L4H3), 
CAPDC_SYNY3 (P73562), DCDA_ACTPA  (O69203), DCDA_BUCAI  (P57513), 
DCDA_BUCAP  (Q8K9C4), DCDA_BUCBP  (Q89AC6), DCDA_CAMJE  (Q9PII5), 
DCDA_DEIRA  (Q9RTK2), DCDA_HALH5  (Q9KCM5), DCDA_NEIMA  (Q9JWA6), 
DCDA_NEIMB  (Q9JXM2), DCDA_THEAC  (Q9HK20), DCDA_ZYMMO  (Q9Z661), 
DOKDC_SALTY (Q8ZNC4), NSPC_CAMJ8  (A8FNH9), NSPC_HERAR  (Q5QCP2), 
NSPC_VIBAL  (Q56575), NSPC_VIBCH  (Q9KRL4), NSPC_VIBCO  (C6YCI2), 
NSPC_VIBVU  (Q8D8D2), SBNH_STAA8  (Q2G1M6), SPEA_AERHH  (A0KIP8), 
SPEA_AERS4  (A4SPD6), SPEA_CHRVO  (Q7NU27), SPEA_PSEPK  (Q88QC7), 
SPEA_PSESM  (Q87VU3), SPEA_SHEAM  (A1S712), SPEA_SHEB2  (B8EAI2), 
SPEA_SHEB5  (A3D3G2), SPEA_SHEB8  (A6WM65), SPEA_SHEB9  (A9KY70), 
SPEA_SHEDO  (Q12LW6), SPEA_SHEFN  (Q083L6), SPEA_SHEHH  (B0TQX3), 
SPEA_SHELP  (A3QDD8), SPEA_SHEON  (Q8EFU5), SPEA_SHEPA  (A8H5G3), 
SPEA_SHEPC  (A4Y5Y9), SPEA_SHEPW  (B8CR70), SPEA_SHESA  (A0KVN8), 
SPEA_SHESH  (A8FWJ3), SPEA_SHESM  (Q0HJY2), SPEA_SHESR  (Q0HW78), 
SPEA_SHESW  (A1RKK8), SPEA_SHEWM  (B1KRD4), SPEA_TOLAT  (C4L9A9), 
SPEA_VIBCH  (Q9KLD1), SPEA_VIBPA  (Q87JS8), SPEA_VIBVU  (Q8DA54), 
SPEA_VIBVY  (Q7MK24), SPEA_XANAC  (Q8PFQ5), SPEA_XANCP  (Q8P448), 
SPEA_XYLF2  (B2I6M1), SPEA_XYLFA  (Q9PH02), SPEA_XYLFM  (B0U1H6), 
SPEA_XYLFT  (Q87F25)
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 1 sequence 

DCOR_PARBR  (Q92445)


				
	

	

		UniProtKB/Swiss-Prot
False positive sequences		
		
			23 sequences
			


			
AR280_ARTOA (G1XU01), ASB2_BOVIN  (Q3SX45), ASB2_HUMAN  (Q96Q27), 

			
ASB2_MOUSE  (Q8K0L0), ASB2_RAT(Q5U2S6), CLAH1_ARATH (Q0WNJ6), 
CLAH2_ARATH (Q0WLB5), CMOA_SULDN  (Q30T90), KS6A4_HUMAN (O75676), 
KS6A4_MOUSE (Q9Z2B9), KS6A5_CHICK (Q5F3L1), KS6A5_HUMAN (O75582), 
KS6A5_MOUSE (Q8C050), KS6A5_PONAB (Q5R4K3), MGLA_VIBCH  (Q9KSD1), 
PHS1_SOLLC  (C1K5M3), POLN_CRPVC  (Q9IJX4), RPB1_FRG3G  (Q6GZW7), 
SCN8A_HUMAN (Q9UQD0), SCN8A_MOUSE (Q9WTU3), SCN8A_RAT   (O88420), 
SYY_STRMU   (Q8DS44), TBAL3_MOUSE (Q3UX10)


			
			» more
			


				
	

	

		PDB
[Detailed view]		
		
			32 PDB
			


			1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2O0T; 2ON3; 
			
				2OO0; 2P3E; 2QGH; 2YXX; 3C5Q; 3N2B; 3NZQ; 4ZGY; 5BWA; 5GJM; 5GJN; 5GJO; 
				5GJP; 5X7M; 5X7N; 6N2A; 6N2F; 7ODC; 7S3F; 7S3G
			
			

			» more