PROSITE logo

PROSITE entry PS00878


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] ODR_DC_2_1
Accession [info] PS00878
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-NOV-1997 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
Pattern [info]
[FY]-[PA]-x-K-[SACV]-[NHCLFW]-x(4)-[LIVMF]-[LIVMTA]-x(2)-[LIVMA]-x(3)-
[GTE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 153 in 153 different sequences
Number of true positive hits 130 in 130 different sequences
Number of 'unknown' hits 0
Number of false positive hits 23 in 23 different sequences
Number of false negative sequences 61
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 84.97 %
Recall (true positives / (true positives + false negatives)) 68.06 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
130 sequences

ADC1A_TOBAC (A0A1S3YCW2), ADC1B_TOBAC (A0A1S3WYR7), ADC2_ORYSJ  (Q7XRA1), 
AZIN2_HUMAN (Q96A70), AZIN2_XENLA (Q9I8S4), DCDA1_ARATH (Q949X7), 
DCDA2_ARATH (Q94A94), DCDA_AQUAE  (O67262), DCDA_ARCFU  (O29458), 
DCDA_BACMT  (P41023), DCDA_BACSU  (P23630), DCDA_BACTN  (Q8A800), 
DCDA_COREF  (Q8RQM6), DCDA_CORGL  (P09890), DCDA_ECOLI  (P00861), 
DCDA_ECOLW  (E0IWI3), DCDA_FRATH  (Q2A5D5), DCDA_HAEIN  (P44316), 
DCDA_HELPJ  (Q9ZME5), DCDA_HELPX  (B4XMC6), DCDA_HELPY  (P56129), 
DCDA_METJA  (Q58497), DCDA_METTH  (O27390), DCDA_MYCBO  (P0A5M5), 
DCDA_MYCLE  (Q50140), DCDA_MYCS2  (Q9X5M1), DCDA_MYCTO  (P9WIU6), 
DCDA_MYCTU  (P9WIU7), DCDA_ORYSJ  (Q6ZG77), DCDA_PSEAE  (P19572), 
DCDA_PSEFL  (O05321), DCDA_STRCO  (Q9ZBH5), DCDA_SYNY3  (Q55484), 
DCDA_THEMA  (Q9X1K5), DCDA_VIBCH  (Q9KVL7), DCLO_SELRU  (O50657), 
DCOR1_DROME (P40807), DCOR1_XENLA (P27120), DCOR2_DROME (P40808), 
DCOR_BOVIN  (P27117), DCOR_CAEEL  (P41931), DCOR_CANAL  (P78599), 
DCOR_CAPAN  (Q8S3N2), DCOR_CHICK  (P27118), DCOR_CRIGR  (P14019), 
DCOR_DATST  (P50134), DCOR_DICDI  (Q54UF3), DCOR_HUMAN  (P11926), 
DCOR_LEIDO  (P27116), DCOR_MOUSE  (P00860), DCOR_MUSPA  (P27119), 
DCOR_NEUCR  (P27121), DCOR_PANRE  (P49725), DCOR_RAT(P09057), 
DCOR_SCHPO  (Q9UQW9), DCOR_SOLLC  (O22616), DCOR_TRYBB  (P07805), 
DCOR_YEAST  (P08432), ODC1A_TOBAC (A0A1S4AUX8), ODC1B_TOBAC (P93351), 
ODC_NICGL   (E0WN94), ODC_NICGU   (Q9FPK5), SPE1_ARATH  (Q9SI64), 
SPE1_AVESA  (P22220), SPE1_BRAJU  (O82475), SPE1_DIACA  (Q96412), 
SPE1_ORYSJ  (Q9SNN0), SPE1_PEA(Q43075), SPE1_SOLLC  (P49726), 
SPE1_SOYBN  (Q39827), SPE2_ARATH  (O23141), SPE2_THECC  (O81160), 
SPEA1_SYNY3 (P74576), SPEA2_SYNY3 (P72587), SPEA_ALKEH  (Q0ACK8), 
SPEA_BACFN  (Q5LIQ3), SPEA_BACFR  (Q64ZT8), SPEA_BACTN  (Q8A2B1), 
SPEA_CITBB  (B5EIW4), SPEA_DEIRA  (Q9RXR4), SPEA_ECO57  (Q8XCX9), 
SPEA_ECO5E  (B5YQD6), SPEA_ECOL6  (Q8FE34), SPEA_ECOLI  (P21170), 
SPEA_ECOSM  (B1LDE8), SPEA_GEODF  (B9M6H6), SPEA_GEOMG  (Q39X78), 
SPEA_GEOSL  (A0A4W3), SPEA_GEOSM  (C6E3V4), SPEA_GEOUR  (A5GB52), 
SPEA_GLOVI  (Q7NE10), SPEA_HAMD5  (C4K6F4), SPEA_KLEP3  (B5XUB1), 
SPEA_MARN8  (A1TY02), SPEA_NEIMA  (Q9JT25), SPEA_NEIMB  (Q9K0U3), 
SPEA_NOSS1  (Q8YRP3), SPEA_PARMW  (Q7U3S0), SPEA_PASMU  (Q9CL60), 
SPEA_PELPD  (A1AS90), SPEA_PHOLL  (Q7N121), SPEA_PHOV8  (A6L012), 
SPEA_PROM0  (A3PA96), SPEA_PROM2  (A8G243), SPEA_PROM3  (A2CDK1), 
SPEA_PROM5  (A2BU00), SPEA_PROM9  (Q31DD8), SPEA_PROMA  (Q7VEG4), 
SPEA_PROMH  (B4F1A4), SPEA_PROMM  (Q7TUJ9), SPEA_PROMP  (Q7V3M9), 
SPEA_PROMS  (A2BNH3), SPEA_PSEAE  (Q9HUX1), SPEA_RHOBA  (Q7UTS2), 
SPEA_SALA4  (B5F5L1), SPEA_SALCH  (Q57K30), SPEA_SALDC  (B5FUJ7), 
SPEA_SALHS  (B4THH1), SPEA_SALNS  (B4T5J3), SPEA_SALPB  (A9N4N1), 
SPEA_SALSV  (B4TV55), SPEA_SALTI  (P60658), SPEA_SALTY  (P60659), 
SPEA_SHIF8  (Q0T0V3), SPEA_SHIFL  (Q83Q93), SPEA_SYNR3  (A5GWM2), 
SPEA_THEVB  (Q8DHY6), SPEA_TRIL1  (B3EAF3), SPEA_YERPE  (Q8ZHG8), 
TABA_PSEAJ  (P31851)
» more

UniProtKB/Swiss-Prot
False negative sequences
61 sequences

AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), 
AZIN1_RAT   (Q63764), AZIN2_MOUSE (Q8BVM4), BTRK_NIACI  (Q2L4H3), 
CAPDC_SYNY3 (P73562), DCDA_ACTPA  (O69203), DCDA_BUCAI  (P57513), 
DCDA_BUCAP  (Q8K9C4), DCDA_BUCBP  (Q89AC6), DCDA_CAMJE  (Q9PII5), 
DCDA_DEIRA  (Q9RTK2), DCDA_HALH5  (Q9KCM5), DCDA_NEIMA  (Q9JWA6), 
DCDA_NEIMB  (Q9JXM2), DCDA_THEAC  (Q9HK20), DCDA_ZYMMO  (Q9Z661), 
DOKDC_SALTY (Q8ZNC4), NSPC_CAMJ8  (A8FNH9), NSPC_HERAR  (Q5QCP2), 
NSPC_VIBAL  (Q56575), NSPC_VIBCH  (Q9KRL4), NSPC_VIBCO  (C6YCI2), 
NSPC_VIBVU  (Q8D8D2), SBNH_STAA8  (Q2G1M6), SPEA_AERHH  (A0KIP8), 
SPEA_AERS4  (A4SPD6), SPEA_CHRVO  (Q7NU27), SPEA_PSEPK  (Q88QC7), 
SPEA_PSESM  (Q87VU3), SPEA_SHEAM  (A1S712), SPEA_SHEB2  (B8EAI2), 
SPEA_SHEB5  (A3D3G2), SPEA_SHEB8  (A6WM65), SPEA_SHEB9  (A9KY70), 
SPEA_SHEDO  (Q12LW6), SPEA_SHEFN  (Q083L6), SPEA_SHEHH  (B0TQX3), 
SPEA_SHELP  (A3QDD8), SPEA_SHEON  (Q8EFU5), SPEA_SHEPA  (A8H5G3), 
SPEA_SHEPC  (A4Y5Y9), SPEA_SHEPW  (B8CR70), SPEA_SHESA  (A0KVN8), 
SPEA_SHESH  (A8FWJ3), SPEA_SHESM  (Q0HJY2), SPEA_SHESR  (Q0HW78), 
SPEA_SHESW  (A1RKK8), SPEA_SHEWM  (B1KRD4), SPEA_TOLAT  (C4L9A9), 
SPEA_VIBCH  (Q9KLD1), SPEA_VIBPA  (Q87JS8), SPEA_VIBVU  (Q8DA54), 
SPEA_VIBVY  (Q7MK24), SPEA_XANAC  (Q8PFQ5), SPEA_XANCP  (Q8P448), 
SPEA_XYLF2  (B2I6M1), SPEA_XYLFA  (Q9PH02), SPEA_XYLFM  (B0U1H6), 
SPEA_XYLFT  (Q87F25)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

DCOR_PARBR  (Q92445)

		
UniProtKB/Swiss-Prot
False positive sequences
23 sequences

AR280_ARTOA (G1XU01), ASB2_BOVIN  (Q3SX45), ASB2_HUMAN  (Q96Q27), 
ASB2_MOUSE  (Q8K0L0), ASB2_RAT(Q5U2S6), CLAH1_ARATH (Q0WNJ6), 
CLAH2_ARATH (Q0WLB5), CMOA_SULDN  (Q30T90), KS6A4_HUMAN (O75676), 
KS6A4_MOUSE (Q9Z2B9), KS6A5_CHICK (Q5F3L1), KS6A5_HUMAN (O75582), 
KS6A5_MOUSE (Q8C050), KS6A5_PONAB (Q5R4K3), MGLA_VIBCH  (Q9KSD1), 
PHS1_SOLLC  (C1K5M3), POLN_CRPVC  (Q9IJX4), RPB1_FRG3G  (Q6GZW7), 
SCN8A_HUMAN (Q9UQD0), SCN8A_MOUSE (Q9WTU3), SCN8A_RAT   (O88420), 
SYY_STRMU   (Q8DS44), TBAL3_MOUSE (Q3UX10)
» more

PDB
[Detailed view]
32 PDB

1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2O0T; 2ON3; 2OO0; 2P3E; 2QGH; 2YXX; 3C5Q; 3N2B; 3NZQ; 4ZGY; 5BWA; 5GJM; 5GJN; 5GJO; 5GJP; 5X7M; 5X7N; 6N2A; 6N2F; 7ODC; 7S3F; 7S3G
» more