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PROSITE entry PS00879


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General information about the entry

Entry name [info] ODR_DC_2_2
Accession [info] PS00879
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE;
13-SEP-2023 INFO UPDATE.
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 signature 2.
Pattern [info] 
[GSA]-x(2,6)-[LIVMSCP]-x-{N}-[LIVMF]-[DNS]-[LIVMCA]-G-G-G-[LIVMFY]-
[GSTPCEQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2023_04 which contains 570'157 sequence entries.


Total number of hits 198 in 196 different sequences
Number of true positive hits 154 in 154 different sequences
Number of 'unknown' hits 0
Number of false positive hits 44 in 42 different sequences
Number of false negative sequences 41
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 77.78 %
Recall (true positives / (true positives + false negatives)) 78.97 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 154 sequences 

ADC1A_TOBAC (A0A1S3YCW2), ADC1B_TOBAC (A0A1S3WYR7), ADC2_ORYSJ  (Q7XRA1), 

AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), 
AZIN1_RAT   (Q63764), AZIN2_HUMAN (Q96A70), AZIN2_MOUSE (Q8BVM4), 
AZIN2_RAT   (D4A693), AZIN2_XENLA (Q9I8S4), BTRK_NIACI  (Q2L4H3), 
COMT1_SACOF (O82054), DCDA1_ARATH (Q949X7), DCDA2_ARATH (Q94A94), 
DCDA_AQUAE  (O67262), DCDA_ARCFU  (O29458), DCDA_BACMT  (P41023), 
DCDA_BACSU  (P23630), DCDA_BACTN  (Q8A800), DCDA_BUCAI  (P57513), 
DCDA_BUCAP  (Q8K9C4), DCDA_CAMJE  (Q9PII5), DCDA_COREF  (Q8RQM6), 
DCDA_CORGL  (P09890), DCDA_ECOLI  (P00861), DCDA_ECOLW  (E0IWI3), 
DCDA_HAEIN  (P44316), DCDA_HALH5  (Q9KCM5), DCDA_HELPJ  (Q9ZME5), 
DCDA_HELPY  (P56129), DCDA_METJA  (Q58497), DCDA_MYCBO  (P0A5M5), 
DCDA_MYCS2  (Q9X5M1), DCDA_MYCTO  (P9WIU6), DCDA_MYCTU  (P9WIU7), 
DCDA_NEIMA  (Q9JWA6), DCDA_NEIMB  (Q9JXM2), DCDA_ORYSJ  (Q6ZG77), 
DCDA_PSEAE  (P19572), DCDA_PSEFL  (O05321), DCDA_STAAC  (Q5HG20), 
DCDA_STRCO  (Q9ZBH5), DCDA_SYNY3  (Q55484), DCDA_VIBCH  (Q9KVL7), 
DCLO_SELRU  (O50657), DCOR1_DROME (P40807), DCOR1_XENLA (P27120), 
DCOR2_DROME (P40808), DCOR_BOVIN  (P27117), DCOR_CAEEL  (P41931), 
DCOR_CANAL  (P78599), DCOR_CAPAN  (Q8S3N2), DCOR_CHICK  (P27118), 
DCOR_CRIGR  (P14019), DCOR_DATST  (P50134), DCOR_DICDI  (Q54UF3), 
DCOR_HUMAN  (P11926), DCOR_LEIDO  (P27116), DCOR_MOUSE  (P00860), 
DCOR_MUSPA  (P27119), DCOR_NEUCR  (P27121), DCOR_PANRE  (P49725), 
DCOR_PARBR  (Q92445), DCOR_RAT(P09057), DCOR_SOLLC  (O22616), 
DCOR_TRYBB  (P07805), DCOR_YEAST  (P08432), FLVG_ASPFN  (B8NHE2), 
LOLD1_EPIUN (Q5MNI5), LOLD2_EPIUN (Q5MNH7), NSPC_HERAR  (Q5QCP2), 
ODC1A_TOBAC (A0A1S4AUX8), ODC1B_TOBAC (P93351), ODC_NICGL   (E0WN94), 
ODC_NICGU   (Q9FPK5), SBNH_STAA8  (Q2G1M6), SPE1_ARATH  (Q9SI64), 
SPE1_AVESA  (P22220), SPE1_BRAJU  (O82475), SPE1_DIACA  (Q96412), 
SPE1_ORYSJ  (Q9SNN0), SPE1_PEA(Q43075), SPE1_SOLLC  (P49726), 
SPE1_SOYBN  (Q39827), SPE2_ARATH  (O23141), SPEA1_SYNY3 (P74576), 
SPEA_AERHH  (A0KIP8), SPEA_AERS4  (A4SPD6), SPEA_ALKEH  (Q0ACK8), 
SPEA_BACFN  (Q5LIQ3), SPEA_BACFR  (Q64ZT8), SPEA_BACTN  (Q8A2B1), 
SPEA_CHRVO  (Q7NU27), SPEA_CITBB  (B5EIW4), SPEA_DEIRA  (Q9RXR4), 
SPEA_ECO57  (Q8XCX9), SPEA_ECO5E  (B5YQD6), SPEA_ECOL6  (Q8FE34), 
SPEA_ECOLI  (P21170), SPEA_ECOSM  (B1LDE8), SPEA_GEODF  (B9M6H6), 
SPEA_GEOMG  (Q39X78), SPEA_GEOSL  (A0A4W3), SPEA_GEOSM  (C6E3V4), 
SPEA_GEOUR  (A5GB52), SPEA_HAMD5  (C4K6F4), SPEA_KLEP3  (B5XUB1), 
SPEA_MARN8  (A1TY02), SPEA_NEIMA  (Q9JT25), SPEA_NEIMB  (Q9K0U3), 
SPEA_NOSS1  (Q8YRP3), SPEA_PARMW  (Q7U3S0), SPEA_PASMU  (Q9CL60), 
SPEA_PELPD  (A1AS90), SPEA_PHOLL  (Q7N121), SPEA_PHOV8  (A6L012), 
SPEA_PROM0  (A3PA96), SPEA_PROM2  (A8G243), SPEA_PROM3  (A2CDK1), 
SPEA_PROM5  (A2BU00), SPEA_PROM9  (Q31DD8), SPEA_PROMA  (Q7VEG4), 
SPEA_PROMH  (B4F1A4), SPEA_PROMM  (Q7TUJ9), SPEA_PROMP  (Q7V3M9), 
SPEA_PROMS  (A2BNH3), SPEA_PSEAE  (Q9HUX1), SPEA_PSEPK  (Q88QC7), 
SPEA_PSESM  (Q87VU3), SPEA_RHOBA  (Q7UTS2), SPEA_SALA4  (B5F5L1), 
SPEA_SALCH  (Q57K30), SPEA_SALDC  (B5FUJ7), SPEA_SALHS  (B4THH1), 
SPEA_SALNS  (B4T5J3), SPEA_SALPB  (A9N4N1), SPEA_SALSV  (B4TV55), 
SPEA_SALTI  (P60658), SPEA_SALTY  (P60659), SPEA_SHIF8  (Q0T0V3), 
SPEA_SHIFL  (Q83Q93), SPEA_SYNR3  (A5GWM2), SPEA_THEVB  (Q8DHY6), 
SPEA_TOLAT  (C4L9A9), SPEA_TRIL1  (B3EAF3), SPEA_XANAC  (Q8PFQ5), 
SPEA_XANCP  (Q8P448), SPEA_XYLF2  (B2I6M1), SPEA_XYLFA  (Q9PH02), 
SPEA_XYLFM  (B0U1H6), SPEA_XYLFT  (Q87F25), SPEA_YERPE  (Q8ZHG8), 
TABA_PSEAJ  (P31851)
» more

UniProtKB/Swiss-Prot
False negative sequences		 41 sequences 

DCDA_ACTPA  (O69203), DCDA_BUCBP  (Q89AC6), DCDA_DEIRA  (Q9RTK2), 

DCDA_FRATH  (Q2A5D5), DCDA_METTH  (O27390), DCDA_MYCLE  (Q50140), 
DCDA_THEAC  (Q9HK20), DCDA_THEMA  (Q9X1K5), DCDA_ZYMMO  (Q9Z661), 
DCOR_SCHPO  (Q9UQW9), DOKDC_SALTY (Q8ZNC4), NSPC_CAMJ8  (A8FNH9), 
NSPC_VIBAL  (Q56575), NSPC_VIBCH  (Q9KRL4), NSPC_VIBCO  (C6YCI2), 
NSPC_VIBVU  (Q8D8D2), SPEA2_SYNY3 (P72587), SPEA_GLOVI  (Q7NE10), 
SPEA_SHEAM  (A1S712), SPEA_SHEB2  (B8EAI2), SPEA_SHEB5  (A3D3G2), 
SPEA_SHEB8  (A6WM65), SPEA_SHEB9  (A9KY70), SPEA_SHEDO  (Q12LW6), 
SPEA_SHEFN  (Q083L6), SPEA_SHEHH  (B0TQX3), SPEA_SHELP  (A3QDD8), 
SPEA_SHEON  (Q8EFU5), SPEA_SHEPA  (A8H5G3), SPEA_SHEPC  (A4Y5Y9), 
SPEA_SHEPW  (B8CR70), SPEA_SHESA  (A0KVN8), SPEA_SHESH  (A8FWJ3), 
SPEA_SHESM  (Q0HJY2), SPEA_SHESR  (Q0HW78), SPEA_SHESW  (A1RKK8), 
SPEA_SHEWM  (B1KRD4), SPEA_VIBCH  (Q9KLD1), SPEA_VIBPA  (Q87JS8), 
SPEA_VIBVU  (Q8DA54), SPEA_VIBVY  (Q7MK24)
» more

UniProtKB/Swiss-Prot
False positive sequences		 42 sequences 

AATR2_DICDI (Q54K00), AB15B_ARATH (Q9LHD1), AFLO_ASPPU  (Q9UQY0), 

APF5_GIBF5  (S0DL59), COMT1_MAIZE (Q06509), CUDP_METAN  (P29138), 
DCDA_HELPX  (B4XMC6), DPFGI_GIBZE (I1RL18), DPMPI_MACPH (K2RGJ8), 
EF114_ARATH (Q9FH54), EPAD1_ORYSJ (Q75GY0), GRF1_MAIZE  (A0A060D764), 
GSFD_PENAE  (D7PI18), HMDH_CANAL  (A0A1D8PD39), HMDH_CYBJA  (O74164), 
HMDH_GANLU  (B2KX91), MCRC_METVA  (P07960), MRAY_GEOMG  (Q39YM2), 
MRAY_GEOSL  (Q748D3), NBN_DANRE   (Q5I2W8), OMT1_ORYSJ  (Q6ZD89), 
OMTB_ASPFN  (Q9P900), PBCC_EMENI  (C8VN86), PFDA_METLZ  (A2STI6), 
PPE34_MYCTU (Q79FI9), PPN_MOUSE   (Q9EPX2), PYRH_VESOH  (A5CXD7), 
RABE2_HUMAN (Q9H5N1), RABE2_PONAB (Q5RCR6), RU1C_USTMA  (Q4P2Q5), 
SBT13_ARATH (Q9FLI4), SBT17_ARATH (O65351), SBT3D_ARATH (Q8GUK4), 
SBT42_ARATH (O23357), SEPF_PROM3  (A2CBM2), SEPF_PROMM  (Q7V8W6), 
TM86B_PIG   (F1RMN2), TPC14_HUMAN (Q8WVR3), UXP_ADE05   (A8W995), 
Y4YA_SINFN  (P55709), YP251_YEAST (Q12058), ZRP4_MAIZE  (P47917)
» more

PDB
[Detailed view]		 36 PDB

1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2J66; 2O0T; 2ON3; 2OO0; 2P3E; 2TOD; 3BTN; 3N2B; 3NZQ; 4ZGY; 4ZGZ; 5BWA; 5GJM; 5GJN; 5GJO; 5GJP; 5X7M; 5X7N; 6N2A; 6N2F; 7ODC; 7RU7; 7S3F; 7S3G; 7U6P; 7U6U
» more