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Entry: PS00894

General information about the entry

Entry name [info] HTH_DEOR_1
Accession [info] PS00894
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE;
12-AUG-2020 INFO UPDATE.
PROSITE Doc. [info] PDOC00696

Name and characterization of the entry

Description [info] DeoR-type HTH domain signature.
Pattern [info] 
R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]-
D-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2020_04 which contains 563'082 sequence entries.


Total number of hits 84 in 84 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.81 %
Recall (true positives / (true positives + false negatives)) 95.40 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 83 sequences 

ACCR_AGRFC  (P32104    ), AGAR_ECO57  (P0ACK4    ), AGAR_ECOL6  (P0ACK3    ), 

AGAR_ECOLI  (P0ACK2    ), CSQR_ECOLI  (P32144    ), DEOR_ECO57  (P0ACK7    ), 
DEOR_ECOL6  (P0ACK6    ), DEOR_ECOLI  (P0ACK5    ), FRUR_BACSU  (O31713    ), 
FUCR_ECOLI  (P0ACK8    ), FUCR_HAEIN  (P44780    ), FUCR_SHIFL  (P0ACK9    ), 
GATR_ECOLI  (P36930    ), GLCR_BACSU  (P94591    ), GLPR_ECOLI  (P0ACL0    ), 
GLPR_HAEIN  (P44784    ), GLPR_HALVD  (D4GYE7    ), GLPR_PSEAE  (Q51391    ), 
GLPR_SHIFL  (P0ACL1    ), GOLR_LISIN  (Q92ET8    ), IOLR_BACSU  (P46337    ), 
LACR_LACLL  (P18816    ), LACR_STAA8  (P0A0Q0    ), LACR_STAAC  (Q5HE08    ), 
LACR_STAAM  (P67743    ), LACR_STAAN  (P67744    ), LACR_STAAR  (Q6GEN3    ), 
LACR_STAAS  (Q6G7B8    ), LACR_STAAW  (P0A0P9    ), LACR_STAEQ  (Q5HM34    ), 
LACR_STAES  (Q8CRJ1    ), LACR_STRMU  (P26422    ), SGCR_ECOLI  (P39361    ), 
SP3D_BACSU  (P15281    ), SRLR_ECOLI  (P15082    ), ULAR_ECO24  (A7ZV62    ), 
ULAR_ECO27  (B7UQK0    ), ULAR_ECO45  (B7MLJ6    ), ULAR_ECO55  (B7LC45    ), 
ULAR_ECO57  (P0A9W2    ), ULAR_ECO5E  (B5Z2J7    ), ULAR_ECO7I  (B7NTP7    ), 
ULAR_ECO81  (B7MSL0    ), ULAR_ECO8A  (B7M8V1    ), ULAR_ECOBW  (C4ZR68    ), 
ULAR_ECODH  (B1XDU2    ), ULAR_ECOHS  (A8A7T7    ), ULAR_ECOK1  (A1AJ96    ), 
ULAR_ECOL5  (Q0T9K2    ), ULAR_ECOL6  (P0A9W1    ), ULAR_ECOLC  (B1IT15    ), 
ULAR_ECOLI  (P0A9W0    ), ULAR_ECOLU  (B7NGC5    ), ULAR_ECOSE  (B6I296    ), 
ULAR_ECOSM  (B1LQL1    ), ULAR_ECOUT  (Q1R369    ), ULAR_SALA4  (B5F3A7    ), 
ULAR_SALAR  (A9MFM3    ), ULAR_SALCH  (Q57GK1    ), ULAR_SALDC  (B5FS93    ), 
ULAR_SALEP  (B5R0Q8    ), ULAR_SALHS  (B4TFC5    ), ULAR_SALNS  (B4T3E2    ), 
ULAR_SALPA  (Q5PJ50    ), ULAR_SALPB  (A9N507    ), ULAR_SALPC  (C0Q6E8    ), 
ULAR_SALPK  (B5BKJ9    ), ULAR_SALSV  (B4TSH1    ), ULAR_SALTI  (Q8XG96    ), 
ULAR_SALTY  (Q7CP93    ), ULAR_SHIB3  (B2TY64    ), ULAR_SHIBS  (Q31TC2    ), 
ULAR_SHIDS  (Q328K6    ), ULAR_SHIF8  (Q0SX94    ), ULAR_SHIFL  (Q83P30    ), 
ULAR_SHISS  (Q3YUF6    ), Y1009_HAEIN (P44978    ), Y1102_STAES (Q8CSL5    ), 
YCIT_ECOLI  (P76034    ), YDJF_ECOLI  (P77721    ), YFJR_ECOLI  (P52133    ), 
YGBI_ECOLI  (P52598    ), YULB_BACSU  (O05261    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 4 sequences 

CCPN_BACSU  (O34994    ), YCNK_BACSU  (P94433    ), YOBV_BACSU  (O34920    ), 

YTZE_BACSU  (O32067    )
» more

UniProtKB/Swiss-Prot
False positive sequences		 1 sequence 

MVP1_YARLI  (Q6CHY6    )


				
	

	

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