PROSITE entry PS00894
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General information about the entry
| Entry name [info] | HTH_DEOR_1 |
| Accession [info] | PS00894 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00696 |
Name and characterization of the entry
| Description [info] | DeoR-type HTH domain signature. |
| Pattern [info] |
R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]-
D-[LIVMF].
|
Numerical results [info]
| Total number of hits | 84 in 84 different sequences |
| Number of true positive hits | 83 in 83 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 4 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 98.81 % |
| Recall (true positives / (true positives + false negatives)) | 95.40 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
83 sequences
ACCR_AGRFC (P32104), AGAR_ECO57 (P0ACK4), AGAR_ECOL6 (P0ACK3), AGAR_ECOLI (P0ACK2), CSQR_ECOLI (P32144), DEOR_ECO57 (P0ACK7), DEOR_ECOL6 (P0ACK6), DEOR_ECOLI (P0ACK5), FRUR_BACSU (O31713), FUCR_ECOLI (P0ACK8), FUCR_HAEIN (P44780), FUCR_SHIFL (P0ACK9), GATR_ECOLI (P36930), GLCR_BACSU (P94591), GLPR_ECOLI (P0ACL0), GLPR_HAEIN (P44784), GLPR_HALVD (D4GYE7), GLPR_PSEAE (Q51391), GLPR_SHIFL (P0ACL1), GOLR_LISIN (Q92ET8), IOLR_BACSU (P46337), LACR_LACLL (P18816), LACR_STAA8 (P0A0Q0), LACR_STAAC (Q5HE08), LACR_STAAM (P67743), LACR_STAAN (P67744), LACR_STAAR (Q6GEN3), LACR_STAAS (Q6G7B8), LACR_STAAW (P0A0P9), LACR_STAEQ (Q5HM34), LACR_STAES (Q8CRJ1), LACR_STRMU (P26422), SGCR_ECOLI (P39361), SP3D_BACSU (P15281), SRLR_ECOLI (P15082), ULAR_ECO24 (A7ZV62), ULAR_ECO27 (B7UQK0), ULAR_ECO45 (B7MLJ6), ULAR_ECO55 (B7LC45), ULAR_ECO57 (P0A9W2), ULAR_ECO5E (B5Z2J7), ULAR_ECO7I (B7NTP7), ULAR_ECO81 (B7MSL0), ULAR_ECO8A (B7M8V1), ULAR_ECOBW (C4ZR68), ULAR_ECODH (B1XDU2), ULAR_ECOHS (A8A7T7), ULAR_ECOK1 (A1AJ96), ULAR_ECOL5 (Q0T9K2), ULAR_ECOL6 (P0A9W1), ULAR_ECOLC (B1IT15), ULAR_ECOLI (P0A9W0), ULAR_ECOLU (B7NGC5), ULAR_ECOSE (B6I296), ULAR_ECOSM (B1LQL1), ULAR_ECOUT (Q1R369), ULAR_SALA4 (B5F3A7), ULAR_SALAR (A9MFM3), ULAR_SALCH (Q57GK1), ULAR_SALDC (B5FS93), ULAR_SALEP (B5R0Q8), ULAR_SALHS (B4TFC5), ULAR_SALNS (B4T3E2), ULAR_SALPA (Q5PJ50), ULAR_SALPB (A9N507), ULAR_SALPC (C0Q6E8), ULAR_SALPK (B5BKJ9), ULAR_SALSV (B4TSH1), ULAR_SALTI (Q8XG96), ULAR_SALTY (Q7CP93), ULAR_SHIB3 (B2TY64), ULAR_SHIBS (Q31TC2), ULAR_SHIDS (Q328K6), ULAR_SHIF8 (Q0SX94), ULAR_SHIFL (Q83P30), ULAR_SHISS (Q3YUF6), Y1009_HAEIN (P44978), Y1102_STAES (Q8CSL5), YCIT_ECOLI (P76034), YDJF_ECOLI (P77721), YFJR_ECOLI (P52133), YGBI_ECOLI (P52598), YULB_BACSU (O05261)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
4 sequences
CCPN_BACSU (O34994), YCNK_BACSU (P94433), YOBV_BACSU (O34920), YTZE_BACSU (O32067)» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
MVP1_YARLI (Q6CHY6) |
| PDB [Detailed view] |
1 PDB
2L0K |