![]() |
|
Entry: PS00894 |
Entry name [info] | HTH_DEOR_1 |
Accession [info] | PS00894 |
Entry type [info] | PATTERN |
Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00696 |
Description [info] | DeoR-type HTH domain signature. |
Pattern [info] |
R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]- D-[LIVMF]. |
Total number of hits | 84 in 84 different sequences |
Number of true positive hits | 83 in 83 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 4 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 98.81 % |
Recall (true positives / (true positives + false negatives)) | 95.40 % |
Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
UniProtKB/Swiss-Prot True positive sequences |
83 sequences
ACCR_AGRFC (P32104 ), AGAR_ECO57 (P0ACK4 ), AGAR_ECOL6 (P0ACK3 ), AGAR_ECOLI (P0ACK2 ), CSQR_ECOLI (P32144 ), DEOR_ECO57 (P0ACK7 ), DEOR_ECOL6 (P0ACK6 ), DEOR_ECOLI (P0ACK5 ), FRUR_BACSU (O31713 ), FUCR_ECOLI (P0ACK8 ), FUCR_HAEIN (P44780 ), FUCR_SHIFL (P0ACK9 ), GATR_ECOLI (P36930 ), GLCR_BACSU (P94591 ), GLPR_ECOLI (P0ACL0 ), GLPR_HAEIN (P44784 ), GLPR_HALVD (D4GYE7 ), GLPR_PSEAE (Q51391 ), GLPR_SHIFL (P0ACL1 ), GOLR_LISIN (Q92ET8 ), IOLR_BACSU (P46337 ), LACR_LACLL (P18816 ), LACR_STAA8 (P0A0Q0 ), LACR_STAAC (Q5HE08 ), LACR_STAAM (P67743 ), LACR_STAAN (P67744 ), LACR_STAAR (Q6GEN3 ), LACR_STAAS (Q6G7B8 ), LACR_STAAW (P0A0P9 ), LACR_STAEQ (Q5HM34 ), LACR_STAES (Q8CRJ1 ), LACR_STRMU (P26422 ), SGCR_ECOLI (P39361 ), SP3D_BACSU (P15281 ), SRLR_ECOLI (P15082 ), ULAR_ECO24 (A7ZV62 ), ULAR_ECO27 (B7UQK0 ), ULAR_ECO45 (B7MLJ6 ), ULAR_ECO55 (B7LC45 ), ULAR_ECO57 (P0A9W2 ), ULAR_ECO5E (B5Z2J7 ), ULAR_ECO7I (B7NTP7 ), ULAR_ECO81 (B7MSL0 ), ULAR_ECO8A (B7M8V1 ), ULAR_ECOBW (C4ZR68 ), ULAR_ECODH (B1XDU2 ), ULAR_ECOHS (A8A7T7 ), ULAR_ECOK1 (A1AJ96 ), ULAR_ECOL5 (Q0T9K2 ), ULAR_ECOL6 (P0A9W1 ), ULAR_ECOLC (B1IT15 ), ULAR_ECOLI (P0A9W0 ), ULAR_ECOLU (B7NGC5 ), ULAR_ECOSE (B6I296 ), ULAR_ECOSM (B1LQL1 ), ULAR_ECOUT (Q1R369 ), ULAR_SALA4 (B5F3A7 ), ULAR_SALAR (A9MFM3 ), ULAR_SALCH (Q57GK1 ), ULAR_SALDC (B5FS93 ), ULAR_SALEP (B5R0Q8 ), ULAR_SALHS (B4TFC5 ), ULAR_SALNS (B4T3E2 ), ULAR_SALPA (Q5PJ50 ), ULAR_SALPB (A9N507 ), ULAR_SALPC (C0Q6E8 ), ULAR_SALPK (B5BKJ9 ), ULAR_SALSV (B4TSH1 ), ULAR_SALTI (Q8XG96 ), ULAR_SALTY (Q7CP93 ), ULAR_SHIB3 (B2TY64 ), ULAR_SHIBS (Q31TC2 ), ULAR_SHIDS (Q328K6 ), ULAR_SHIF8 (Q0SX94 ), ULAR_SHIFL (Q83P30 ), ULAR_SHISS (Q3YUF6 ), Y1009_HAEIN (P44978 ), Y1102_STAES (Q8CSL5 ), YCIT_ECOLI (P76034 ), YDJF_ECOLI (P77721 ), YFJR_ECOLI (P52133 ), YGBI_ECOLI (P52598 ), YULB_BACSU (O05261 )» more
|
UniProtKB/Swiss-Prot False negative sequences |
4 sequences
CCPN_BACSU (O34994 ), YCNK_BACSU (P94433 ), YOBV_BACSU (O34920 ), YTZE_BACSU (O32067 )» more |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
MVP1_YARLI (Q6CHY6 ) |
PDB [Detailed view] |
1 PDB
2L0K |