PROSITE entry PS00894

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General information about the entry

Entry name [info]	HTH_DEOR_1
Accession [info]	PS00894
Entry type [info]	PATTERN
Date [info]	01-OCT-1993 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00696

Name and characterization of the entry

Description [info]	DeoR-type HTH domain signature.
Pattern [info]	R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]- D-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	84 in 84 different sequences
Number of true positive hits	83 in 83 different sequences
Number of 'unknown' hits	0
Number of false positive hits	1
Number of false negative sequences	5
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	98.81 %
Recall (true positives / (true positives + false negatives))	94.32 %

Comments [info]

Taxonomic range [info]	Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	83 sequences ACCR_AGRFC (P32104), AGAR_ECO57 (P0ACK4), AGAR_ECOL6 (P0ACK3), AGAR_ECOLI (P0ACK2), CSQR_ECOLI (P32144), DEOR_ECO57 (P0ACK7), DEOR_ECOL6 (P0ACK6), DEOR_ECOLI (P0ACK5), FRUR_BACSU (O31713), FUCR_ECOLI (P0ACK8), FUCR_HAEIN (P44780), FUCR_SHIFL (P0ACK9), GATR_ECOLI (P36930), GLCR_BACSU (P94591), GLPR_ECOLI (P0ACL0), GLPR_HAEIN (P44784), GLPR_HALVD (D4GYE7), GLPR_PSEAE (Q51391), GLPR_SHIFL (P0ACL1), GOLR_LISIN (Q92ET8), IOLR_BACSU (P46337), LACR_LACLL (P18816), LACR_STAA8 (P0A0Q0), LACR_STAAC (Q5HE08), LACR_STAAM (P67743), LACR_STAAN (P67744), LACR_STAAR (Q6GEN3), LACR_STAAS (Q6G7B8), LACR_STAAW (P0A0P9), LACR_STAEQ (Q5HM34), LACR_STAES (Q8CRJ1), LACR_STRMU (P26422), SGCR_ECOLI (P39361), SP3D_BACSU (P15281), SRLR_ECOLI (P15082), ULAR_ECO24 (A7ZV62), ULAR_ECO27 (B7UQK0), ULAR_ECO45 (B7MLJ6), ULAR_ECO55 (B7LC45), ULAR_ECO57 (P0A9W2), ULAR_ECO5E (B5Z2J7), ULAR_ECO7I (B7NTP7), ULAR_ECO81 (B7MSL0), ULAR_ECO8A (B7M8V1), ULAR_ECOBW (C4ZR68), ULAR_ECODH (B1XDU2), ULAR_ECOHS (A8A7T7), ULAR_ECOK1 (A1AJ96), ULAR_ECOL5 (Q0T9K2), ULAR_ECOL6 (P0A9W1), ULAR_ECOLC (B1IT15), ULAR_ECOLI (P0A9W0), ULAR_ECOLU (B7NGC5), ULAR_ECOSE (B6I296), ULAR_ECOSM (B1LQL1), ULAR_ECOUT (Q1R369), ULAR_SALA4 (B5F3A7), ULAR_SALAR (A9MFM3), ULAR_SALCH (Q57GK1), ULAR_SALDC (B5FS93), ULAR_SALEP (B5R0Q8), ULAR_SALHS (B4TFC5), ULAR_SALNS (B4T3E2), ULAR_SALPA (Q5PJ50), ULAR_SALPB (A9N507), ULAR_SALPC (C0Q6E8), ULAR_SALPK (B5BKJ9), ULAR_SALSV (B4TSH1), ULAR_SALTI (Q8XG96), ULAR_SALTY (Q7CP93), ULAR_SHIB3 (B2TY64), ULAR_SHIBS (Q31TC2), ULAR_SHIDS (Q328K6), ULAR_SHIF8 (Q0SX94), ULAR_SHIFL (Q83P30), ULAR_SHISS (Q3YUF6), Y1009_HAEIN (P44978), Y1102_STAES (Q8CSL5), YCIT_ECOLI (P76034), YDJF_ECOLI (P77721), YFJR_ECOLI (P52133), YGBI_ECOLI (P52598), YULB_BACSU (O05261) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	5 sequences CCPN_BACSU (O34994), SIWR_MYCS2 (A0QS56), YCNK_BACSU (P94433), YOBV_BACSU (O34920), YTZE_BACSU (O32067) » more
UniProtKB/Swiss-Prot False positive sequences	1 sequence MVP1_YARLI (Q6CHY6)
PDB [Detailed view]	1 PDB 2L0K