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PROSITE entry PS00894


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General information about the entry

Entry name [info] HTH_DEOR_1
Accession [info] PS00894
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00696

Name and characterization of the entry

Description [info] DeoR-type HTH domain signature.
Pattern [info]
R-{G}-x(2)-[LIVM]-x(3)-[LIVM]-x(16,17)-[STA]-x(2)-T-[LIVMA]-[RH]-[KRNAQ]-
D-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 84 in 84 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 5
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.81 %
Recall (true positives / (true positives + false negatives)) 94.32 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

ACCR_AGRFC  (P32104), AGAR_ECO57  (P0ACK4), AGAR_ECOL6  (P0ACK3), 
AGAR_ECOLI  (P0ACK2), CSQR_ECOLI  (P32144), DEOR_ECO57  (P0ACK7), 
DEOR_ECOL6  (P0ACK6), DEOR_ECOLI  (P0ACK5), FRUR_BACSU  (O31713), 
FUCR_ECOLI  (P0ACK8), FUCR_HAEIN  (P44780), FUCR_SHIFL  (P0ACK9), 
GATR_ECOLI  (P36930), GLCR_BACSU  (P94591), GLPR_ECOLI  (P0ACL0), 
GLPR_HAEIN  (P44784), GLPR_HALVD  (D4GYE7), GLPR_PSEAE  (Q51391), 
GLPR_SHIFL  (P0ACL1), GOLR_LISIN  (Q92ET8), IOLR_BACSU  (P46337), 
LACR_LACLL  (P18816), LACR_STAA8  (P0A0Q0), LACR_STAAC  (Q5HE08), 
LACR_STAAM  (P67743), LACR_STAAN  (P67744), LACR_STAAR  (Q6GEN3), 
LACR_STAAS  (Q6G7B8), LACR_STAAW  (P0A0P9), LACR_STAEQ  (Q5HM34), 
LACR_STAES  (Q8CRJ1), LACR_STRMU  (P26422), SGCR_ECOLI  (P39361), 
SP3D_BACSU  (P15281), SRLR_ECOLI  (P15082), ULAR_ECO24  (A7ZV62), 
ULAR_ECO27  (B7UQK0), ULAR_ECO45  (B7MLJ6), ULAR_ECO55  (B7LC45), 
ULAR_ECO57  (P0A9W2), ULAR_ECO5E  (B5Z2J7), ULAR_ECO7I  (B7NTP7), 
ULAR_ECO81  (B7MSL0), ULAR_ECO8A  (B7M8V1), ULAR_ECOBW  (C4ZR68), 
ULAR_ECODH  (B1XDU2), ULAR_ECOHS  (A8A7T7), ULAR_ECOK1  (A1AJ96), 
ULAR_ECOL5  (Q0T9K2), ULAR_ECOL6  (P0A9W1), ULAR_ECOLC  (B1IT15), 
ULAR_ECOLI  (P0A9W0), ULAR_ECOLU  (B7NGC5), ULAR_ECOSE  (B6I296), 
ULAR_ECOSM  (B1LQL1), ULAR_ECOUT  (Q1R369), ULAR_SALA4  (B5F3A7), 
ULAR_SALAR  (A9MFM3), ULAR_SALCH  (Q57GK1), ULAR_SALDC  (B5FS93), 
ULAR_SALEP  (B5R0Q8), ULAR_SALHS  (B4TFC5), ULAR_SALNS  (B4T3E2), 
ULAR_SALPA  (Q5PJ50), ULAR_SALPB  (A9N507), ULAR_SALPC  (C0Q6E8), 
ULAR_SALPK  (B5BKJ9), ULAR_SALSV  (B4TSH1), ULAR_SALTI  (Q8XG96), 
ULAR_SALTY  (Q7CP93), ULAR_SHIB3  (B2TY64), ULAR_SHIBS  (Q31TC2), 
ULAR_SHIDS  (Q328K6), ULAR_SHIF8  (Q0SX94), ULAR_SHIFL  (Q83P30), 
ULAR_SHISS  (Q3YUF6), Y1009_HAEIN (P44978), Y1102_STAES (Q8CSL5), 
YCIT_ECOLI  (P76034), YDJF_ECOLI  (P77721), YFJR_ECOLI  (P52133), 
YGBI_ECOLI  (P52598), YULB_BACSU  (O05261)
» more

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

CCPN_BACSU  (O34994), SIWR_MYCS2  (A0QS56), YCNK_BACSU  (P94433), 
YOBV_BACSU  (O34920), YTZE_BACSU  (O32067)
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

MVP1_YARLI  (Q6CHY6)

		
PDB
[Detailed view]
1 PDB

2L0K