PROSITE entry PS00903
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General information about the entry
| Entry name [info] | CYT_DCMP_DEAMINASES_1 |
| Accession [info] | PS00903 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00702 |
Name and characterization of the entry
| Description [info] | Cytidine and deoxycytidylate deaminases zinc-binding region signature. |
| Pattern [info] |
[CH]-[AGV]-E-x(2)-[LIVMFGAT]-[LIVM]-x(17,33)-P-C-x(2,8)-C-x(3)-[LIVM]. |
Numerical results [info]
| Total number of hits | 256 in 248 different sequences |
| Number of true positive hits | 251 in 243 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 25 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 98.05 % |
| Recall (true positives / (true positives + false negatives)) | 90.94 % |
Comments [info]
| Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 2 |
| Site [info] | zinc at position 1 |
| Site [info] | zinc at position 9 |
| Site [info] | zinc at position 11 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
243 sequences
AB3CA_FELCA (Q4VDN5), ABC3A_HUMAN (P31941), ABC3B_HUMAN (Q9UH17), ABC3C_GORGO (Q694B5), ABC3C_HUMAN (Q9NRW3), ABC3D_HUMAN (Q96AK3), ABC3F_HUMAN (Q8IUX4), ABC3G_CHLAE (Q7YR25), ABC3G_ERYPA (Q694C5), ABC3G_GORGO (Q694C1), ABC3G_HUMAN (Q9HC16), ABC3G_LAGLA (Q694B8), ABC3G_MACFA (Q694C2), ABC3G_MACMU (Q7YR23), ABC3G_MACNG (Q694C4), ABC3G_PANPA (Q694B6), ABC3G_PANTR (Q7YR24), ABC3G_PAPAN (Q694B7), ABC3G_PONPY (Q694C0), ABC3G_SAGLB (Q694B9), ABC3H_FELCA (A9QA56), ABC3H_HUMAN (Q6NTF7), ABC3H_MACMU (Q19Q52), ABC3H_PONPY (Q1WBT4), ABEC1_HUMAN (P41238), ABEC1_MESAU (Q9EQP0), ABEC1_MONDO (Q9TUI7), ABEC1_MOUSE (P51908), ABEC1_PONPY (Q694B3), ABEC1_RABIT (P47855), ABEC1_RAT (P38483), ABEC3_CRILO (P60704), ABEC3_MOUSE (Q99J72), ABEC3_RAT (P60705), ADAT2_BOVIN (Q5E9J7), ADAT2_DANRE (Q5RIV4), ADAT2_HUMAN (Q7Z6V5), ADAT2_MOUSE (Q6P6J0), ADAT2_XENLA (Q4V7V8), ADAT2_XENTR (Q0P4H0), AICDA_BOVIN (Q2PT36), AICDA_CANLF (Q75W64), AICDA_HUMAN (Q9GZX7), AICDA_MOUSE (Q9WVE0), BSD_ASPTE (P0C2P0), BSD_ASPTN (P0C2P1), BSD_COCIM (P0CI02), BSR_BACCE (P33967), CDA1_ARATH (O65896), CDA2_ARATH (O65571), CDA3_ARATH (Q9S847), CDA5_ARATH (Q9S7L8), CDA8_ARATH (Q9XEX4), CDAC1_DANRE (Q5U3U4), CDAC1_HUMAN (Q9BWV3), CDAC1_MACFA (Q4R683), CDAC1_MOUSE (Q8BMD5), CDAC1_PONAB (Q5RAX4), CDD_ACTP2 (A3N1Z1), CDD_ACTP7 (B3GYC3), CDD_ACTPJ (B0BQT2), CDD_ACTSZ (A6VLF5), CDD_AERHH (A0KJH4), CDD_AERS4 (A4SNI2), CDD_ALIF1 (Q5E4R6), CDD_ALIFM (B5FEN2), CDD_BACSU (P19079), CDD_CITK8 (A8AE87), CDD_CROS8 (A7MLJ4), CDD_ECO24 (A7ZNW5), CDD_ECO27 (B7UFF9), CDD_ECO45 (B7MF55), CDD_ECO55 (B7LA09), CDD_ECO57 (Q8X648), CDD_ECO5E (B5YW75), CDD_ECO7I (B7NMA8), CDD_ECO81 (B7MXF5), CDD_ECO8A (B7M4Y8), CDD_ECOBW (C4ZSM3), CDD_ECODH (B1X7N2), CDD_ECOHS (A8A204), CDD_ECOK1 (A1AD04), CDD_ECOL5 (Q0TFU8), CDD_ECOL6 (Q8FFV3), CDD_ECOLC (B1IYC6), CDD_ECOLI (P0ABF6), CDD_ECOLU (B7NCH2), CDD_ECOSE (B6I8J3), CDD_ECOSM (B1LKP0), CDD_ECOUT (Q1R9T0), CDD_EDWI9 (C5BCM4), CDD_ENT38 (A4WCI1), CDD_ERWT9 (B2VIF3), CDD_ESCF3 (B7LVA3), CDD_HAEDU (Q7VMJ6), CDD_HAEI8 (Q4QK60), CDD_HAEIE (A5UBV9), CDD_HAEIG (A5UEI7), CDD_HAEIN (P44325), CDD_HALH5 (Q9KD53), CDD_HISS1 (Q0I4X6), CDD_HISS2 (B0USP2), CDD_HUMAN (P32320), CDD_KLEP3 (B5XP65), CDD_KLEP7 (A6TBN1), CDD_MANSM (Q65RG8), CDD_MOUSE (P56389), CDD_MYCGE (P47298), CDD_MYCPI (P47718), CDD_MYCPN (P75051), CDD_MYCTO (P9WPH2), CDD_MYCTU (P9WPH3), CDD_PASMU (Q9CP11), CDD_PECAS (Q6D3B4), CDD_PECCP (C6DDS7), CDD_PHOLL (Q7N6K3), CDD_PHOPR (Q6LRI0), CDD_PROMH (B4ESY3), CDD_PSET1 (Q3IBX5), CDD_SALA4 (B5EYN3), CDD_SALAR (A9MKS5), CDD_SALCH (Q57MF5), CDD_SALDC (B5FMZ9), CDD_SALEP (B5R153), CDD_SALG2 (B5RC22), CDD_SALHS (B4TAK5), CDD_SALNS (B4SY15), CDD_SALPA (Q5PE68), CDD_SALPB (A9N6L3), CDD_SALPC (C0Q0V4), CDD_SALPK (B5BE52), CDD_SALSV (B4TNP0), CDD_SALTI (Q8Z5A8), CDD_SALTY (Q8ZNM0), CDD_SCHPO (Q09190), CDD_SERP5 (A8GC32), CDD_SHEAM (A1S723), CDD_SHEB2 (B8EF35), CDD_SHEB5 (A3D392), CDD_SHEB8 (A6WLY5), CDD_SHEB9 (A9KXF0), CDD_SHEFN (Q083S7), CDD_SHEHH (B0TQV3), CDD_SHELP (A3QDC9), CDD_SHEON (Q8EDG1), CDD_SHEPA (A8H5H1), CDD_SHEPC (A4Y5R0), CDD_SHEPW (B8CR83), CDD_SHESA (A0KYD1), CDD_SHESH (A8FWK2), CDD_SHESM (Q0HHI5), CDD_SHESR (Q0HTT9), CDD_SHESW (A1RL10), CDD_SHEWM (B1KRC5), CDD_SHIB3 (B2TVV2), CDD_SHIBS (Q322V3), CDD_SHIDS (Q32EM3), CDD_SHIF8 (Q0T2Y0), CDD_SHIFL (P0ABF7), CDD_SHISS (Q3Z062), CDD_SODGM (Q2NUD2), CDD_VIBA3 (B7VPF1), CDD_VIBC1 (A7MVH6), CDD_VIBC3 (A5F1V7), CDD_VIBCH (Q9KSM5), CDD_VIBCM (C3LLS7), CDD_VIBPA (Q87Q52), CDD_VIBVU (Q8DA31), CDD_VIBVY (Q7MK48), CDD_YEAST (Q06549), CDD_YERP3 (A7FJK3), CDD_YERPA (Q1C9U7), CDD_YERPB (B2JZJ6), CDD_YERPE (Q8ZG08), CDD_YERPG (A9R1B9), CDD_YERPN (Q1CGT5), CDD_YERPP (A4TKN7), CDD_YERPS (Q66C79), CDD_YERPY (B1JPZ5), COMEB_BACSU (P32393), DCTD_BPMD2 (O22000), DCTD_BPT2 (P00814), DCTD_BPT4 (P16006), DCTD_CAEEL (P30648), DCTD_DROME (Q9VWA2), DCTD_HUMAN (P32321), DCTD_MOUSE (Q8K2D6), DCTD_PONAB (Q5RC69), DCTD_RAT(Q5M9G0), DCTD_SCHPO (O43012), DCTD_YEAST (P06773), FCA1_CANAL (P78594), FCY1_YEAST (Q12178), FCYS_SCHPO (O59834), GSDA_ARATH (Q94BU8), GUAD_BACSU (O34598), RIBD1_BUCAI (P57533), RIBD1_BUCAP (Q8K9A4), RIBD_ACTPL (P50853), RIBD_AQUAE (O66534), RIBD_ARATH (Q8GWP5), RIBD_BACAM (P70814), RIBD_BACSU (P17618), RIBD_BUCBP (Q89AB0), RIBD_CHLPN (Q9Z735), RIBD_CHLTR (O84735), RIBD_CORAM (O24750), RIBD_ECOLI (P25539), RIBD_HAEIN (P44326), RIBD_MAIZE (B6TRH4), RIBD_MYCTO (P9WPH0), RIBD_MYCTU (P9WPH1), RIBD_SYNY3 (Q55158), TAD2_ARATH (Q6IDB6), TAD2_SCHPO (O94642), TAD2_YEAST (P47058), TADA_AGRFC (A9CK16), TADA_AQUAE (O67050), TADA_BACSU (P21335), TADA_BUCAI (P57343), TADA_BUCAP (Q8K9R4), TADA_BUCBP (Q89AM8), TADA_ECO57 (Q8XA44), TADA_ECOL6 (Q8FF24), TADA_ECOLI (P68398), TADA_HAEIN (P44931), TADA_RICBR (Q1RGK7), TADA_RICCN (Q92G39), TADA_RICFE (Q4UJW9), TADA_RICPR (Q9ZCC6), TADA_RICTY (Q68Y02), TADA_SALTI (Q8XGY4), TADA_SALTY (Q7CQ08), TADA_SHIFL (P68397), TADA_STAAM (Q99W51), TADA_STRP1 (P68999), TADA_STRP3 (P0DA20), TADA_STRP6 (Q5XE14), TADA_STRP8 (Q8P2R7), TADA_STRPQ (P0DA21), TILS_THET2 (Q72IF6), TILS_THET8 (Q5SI38), YLXG_ALIFS (P33968)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
25 sequences
ABEC2_BOVIN (Q3SYR3), ABEC2_HUMAN (Q9Y235), ABEC2_MOUSE (Q9WV35), ABEC2_PONPY (Q694B4), ABEC4_HUMAN (Q8WW27), ABEC4_MACFA (Q8WP22), ABEC4_MOUSE (Q497M3), ABEC4_RAT (Q6AXX9), ADAT3_DANRE (Q8JFW4), ADAT3_HUMAN (Q96EY9), ADAT3_MOUSE (Q6PAT0), ADAT3_RAT (Q561R2), CDA4_ARATH (Q9S7S2), CDA6_ARATH (Q9SU86), CDA7_ARATH (Q9SU87), CDA9_ARATH (Q9S789), CDAT8_METKA (Q8TWU6), CDD_DICDI (Q54I82), CDD_SPOPS (Q9S3M0), RIB2_SCHPO (P87241), RIBD_CHLMU (Q9PLJ6), TAD3_ARATH (F4KH86), TAD3_SCHPO (Q9P7N4), TAD3_YEAST (Q9URQ3), TADA_ARATH (Q9S7I0)» more |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
SECA_COXBU (Q83F06), SECA_PSEMY (A4XQT3), SECA_SHELP (A3QIL3), SECA_STUS1 (A4VPA3), Y949_METJA (Q58359)» more |
| PDB [Detailed view] |
86 PDB
1AF2; 1ALN; 1CTT; 1CTU; 1JTK; 1MQ0; 1OX7; 1P6O; 1R5T; 1RB7; 1TIY; 1UAQ; 1UWZ; 1UX0; 1UX1; 1VQ2; 1WKQ; 1WN5; 1WN6; 1WWR; 1YSB; 1YSD; 1Z3A; 1ZAB; 2A8N; 2B3J; 2B3Z; 2D5N; 2FR5; 2FR6; 2G6V; 2NX8; 2O3K; 2O7P; 2OBC; 2W4L; 2Z3G; 2Z3H; 2Z3J; 3DH1; 3EX8; 3IJF; 3OJ6; 4EG2; 4G3M; 4WIF; 4WIG; 5CQH; 5CQI; 5JJ4; 5W0Z; 5ZVA; 5ZVB; 6B0B; 6BWY; 6K63; 6L08; 6VPC; 7BV5; 7CPH; 7DBF; 7DCA; 7DCB; 7DCW; 7DGC; 7DH1; 7DLC; 7DM5; 7DM6; 7DOW; 7DOX; 7DOY; 7DPK; 7DQN; 7NZ7; 7NZ8; 7NZ9; 8E2P; 8E2Q; 8E2R; 8E2S; 8H0I; 8I3N; 8I3O; 8I3P; 8J62 » more |